Experiment set2IT073 for Herbaspirillum seropedicae SmR1

Compare to:

LB with Sisomicin sulfate salt 0.125 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS22350 +2.4 2.4 urea carboxylase compare
HSERO_RS08725 +1.8 3.3 transcriptional regulator compare
HSERO_RS16275 +1.8 2.2 5-hydroxyisourate hydrolase compare
HSERO_RS15070 +1.8 2.8 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS18935 +1.7 6.4 LysR family transcriptional regulator compare
HSERO_RS13885 +1.7 7.8 histidine kinase compare
HSERO_RS02560 +1.5 2.7 hypothetical protein compare
HSERO_RS22420 +1.5 2.8 azoreductase compare
HSERO_RS10870 +1.5 7.2 methionine aminopeptidase compare
HSERO_RS20615 +1.5 2.2 phenylacetate-CoA oxygenase subunit PaaB compare
HSERO_RS01505 +1.5 3.5 transketolase compare
HSERO_RS09745 +1.5 1.8 chemotaxis protein CheY compare
HSERO_RS02065 +1.5 4.8 hypothetical protein compare
HSERO_RS10195 +1.4 6.4 flagellar hook protein FlgE compare
HSERO_RS09780 +1.4 1.5 phosphoglycerate mutase compare
HSERO_RS10185 +1.4 4.8 flagellar basal body rod protein FlgC compare
HSERO_RS03435 +1.4 2.0 bacterioferritin compare
HSERO_RS10650 +1.4 3.6 hypothetical protein compare
HSERO_RS10765 +1.3 1.9 hypothetical protein compare
HSERO_RS13890 +1.3 3.6 LuxR family transcriptional regulator compare
HSERO_RS04165 +1.2 1.5 hypothetical protein compare
HSERO_RS10665 +1.2 3.3 coproporphyrinogen III oxidase compare
HSERO_RS19455 +1.2 1.6 3-ketoacyl-ACP reductase compare
HSERO_RS02805 +1.2 4.4 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
HSERO_RS14985 +1.2 3.2 transcriptional regulator compare
HSERO_RS01825 +1.2 3.7 RNA pyrophosphohydrolase compare
HSERO_RS03680 +1.2 1.9 type VI secretion system protein ImpK compare
HSERO_RS19575 +1.2 2.1 50S ribosomal protein L25 compare
HSERO_RS12520 +1.2 1.0 hypothetical protein compare
HSERO_RS10190 +1.1 3.9 flagellar basal body rod modification protein FlgD compare
HSERO_RS10290 +1.1 2.4 flagellar biosynthesis protein FliJ compare
HSERO_RS06420 +1.1 1.5 hypothetical protein compare
HSERO_RS10200 +1.1 3.7 flagellar basal body rod protein FlgF compare
HSERO_RS12975 +1.1 1.5 phytoene synthase compare
HSERO_RS06355 +1.1 3.2 2,4-diketo-3-deoxy-L-fuconate hydrolase (EC 3.7.1.26) (from data) compare
HSERO_RS13590 +1.1 2.1 D-galactose-1-dehydrogenase compare
HSERO_RS22065 +1.1 2.7 EpiA compare
HSERO_RS22440 +1.1 1.5 hypothetical protein compare
HSERO_RS09160 +1.1 2.6 amidase compare
HSERO_RS17985 +1.1 3.6 tRNA pseudouridine synthase B compare
HSERO_RS11885 +1.1 1.4 hypothetical protein compare
HSERO_RS10030 +1.1 1.9 acyltransferase compare
HSERO_RS09085 +1.1 1.7 LysR family transcriptional regulator compare
HSERO_RS09740 +1.1 4.4 histidine kinase compare
HSERO_RS09245 +1.1 1.4 carboxylesterase compare
HSERO_RS13035 +1.0 3.5 hypothetical protein compare
HSERO_RS04475 +1.0 1.5 tail fiber assembly protein compare
HSERO_RS24030 +1.0 4.4 hypothetical protein compare
HSERO_RS13535 +1.0 1.9 hypothetical protein compare
HSERO_RS12740 +1.0 2.2 histone acetyltransferase HPA2, GnaT family, acetyltransferase compare
HSERO_RS06610 +1.0 2.6 oxidoreductase, molybdopterin-binding protein compare
HSERO_RS11490 +1.0 3.1 D-ribose ABC transporter, permease component RbsC (from data) compare
HSERO_RS02275 +1.0 0.9 hypothetical protein compare
HSERO_RS10265 +1.0 1.3 flagellar biosynthesis protein FliO compare
HSERO_RS10355 +1.0 2.0 flagellin compare
HSERO_RS07380 +1.0 1.0 hypothetical protein compare
HSERO_RS10080 +1.0 1.6 hypothetical protein compare
HSERO_RS06465 +1.0 1.5 cell envelope biogenesis protein OmpA compare
HSERO_RS07400 +0.9 1.9 LysR family transcriptional regulator compare
HSERO_RS03705 +0.9 3.5 EvpB family type VI secretion protein compare
HSERO_RS13655 +0.9 3.2 hypothetical protein compare
HSERO_RS03695 +0.9 4.2 hypothetical protein compare
HSERO_RS16070 +0.9 2.4 cytochrome biogenesis protein compare
HSERO_RS12300 +0.9 2.7 hypothetical protein compare
HSERO_RS10250 +0.9 2.0 flagellar biosynthesis protein FliR compare
HSERO_RS04045 +0.9 3.1 pilus assembly protein compare
HSERO_RS11625 +0.9 2.4 dioxygenase compare
HSERO_RS05855 +0.9 2.7 flagellar motor protein MotA compare
HSERO_RS14025 +0.9 2.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS01720 +0.9 1.5 membrane protein compare
HSERO_RS03685 +0.9 3.8 type VI secretion protein compare
HSERO_RS02760 +0.9 1.3 hypothetical protein compare
HSERO_RS02140 +0.9 0.7 thiamine-phosphate synthase compare
HSERO_RS07910 +0.9 1.8 alkylhydroperoxidase compare
HSERO_RS16370 +0.9 0.9 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS09240 +0.9 3.6 lipase compare
HSERO_RS18175 +0.9 1.8 nitrate reductase compare
HSERO_RS06745 +0.9 0.8 hypothetical protein compare
HSERO_RS02535 +0.9 1.8 short-chain dehydrogenase compare
HSERO_RS09055 +0.9 1.3 hypothetical protein compare
HSERO_RS16910 +0.9 1.8 hypothetical protein compare
HSERO_RS10180 +0.9 0.7 flagellar biosynthesis protein FlgB compare
HSERO_RS02135 +0.9 3.9 phosphomethylpyrimidine kinase compare
HSERO_RS03785 +0.9 4.2 type VI secretion protein VasK compare
HSERO_RS07700 +0.9 2.2 ABC transporter permease compare
HSERO_RS18965 +0.9 0.9 thiopurine S-methyltransferase compare
HSERO_RS11430 +0.9 1.9 GntR family transcriptional regulator compare
HSERO_RS20625 +0.9 0.8 phenylacetate-CoA oxygenase compare
HSERO_RS11010 +0.8 1.7 RnfH compare
HSERO_RS13340 +0.8 0.8 hypothetical protein compare
HSERO_RS01425 +0.8 2.0 DNA-binding protein compare
HSERO_RS07300 +0.8 2.2 glutamate--cysteine ligase compare
HSERO_RS10505 +0.8 3.4 phosphatidylinositol kinase compare
HSERO_RS00780 +0.8 3.5 sugar transferase compare
HSERO_RS03675 +0.8 4.1 type VI secretion protein compare
HSERO_RS10205 +0.8 2.8 flagellar basal body rod protein FlgG compare
HSERO_RS19080 +0.8 3.5 hypothetical protein compare
HSERO_RS17640 +0.8 4.2 Fe2+-dicitrate sensor membrane protein compare
HSERO_RS12850 +0.8 2.2 LuxR family transcriptional regulator compare
HSERO_RS11980 +0.8 0.6 hypothetical protein compare
HSERO_RS22205 +0.8 1.5 L-rhamnose mutarotase compare
HSERO_RS15245 +0.8 2.4 XRE family transcriptional regulator compare
HSERO_RS05620 +0.8 0.7 dehydratase compare
HSERO_RS12865 +0.8 1.0 spore coat protein compare
HSERO_RS02795 +0.8 1.8 alcohol dehydrogenase compare
HSERO_RS06800 +0.8 2.0 hypothetical protein compare
HSERO_RS03735 +0.8 4.4 type VI secretion protein compare
HSERO_RS14365 +0.8 1.2 nitrogen fixation protein NifZ compare
HSERO_RS13075 +0.8 3.0 transcriptional regulator compare
HSERO_RS08990 +0.8 1.8 heat shock protein 90 compare
HSERO_RS06705 +0.8 3.7 MFS transporter compare
HSERO_RS02910 +0.8 2.5 IclR family transcriptional regulator compare
HSERO_RS22115 +0.8 3.1 glycosyl transferase compare
HSERO_RS18630 +0.8 0.8 hemerythrin compare
HSERO_RS11665 +0.8 1.3 nitrate ABC transporter ATP-binding protein compare
HSERO_RS19085 +0.8 3.2 DNA-binding protein compare
HSERO_RS16860 +0.8 1.4 hypothetical protein compare
HSERO_RS04025 +0.8 1.6 hypothetical protein compare
HSERO_RS23270 +0.8 1.3 ABC transporter compare
HSERO_RS18770 +0.8 1.5 transcriptional regulator compare
HSERO_RS16195 +0.8 2.3 RNA polymerase sigma factor compare
HSERO_RS02025 +0.8 2.6 D-tyrosyl-tRNA(Tyr) deacylase compare
HSERO_RS09955 +0.8 2.1 chain-length determining protein compare
HSERO_RS06545 +0.8 1.7 catechol 1,2-dioxygenase compare
HSERO_RS08000 +0.8 2.6 metal-transporting P-type ATPase transmembrane protein compare
HSERO_RS01160 +0.8 1.6 LysR family transcriptional regulator compare
HSERO_RS03815 +0.8 4.4 type VI secretion protein compare
HSERO_RS09235 +0.8 0.7 MarR family transcriptional regulator compare
HSERO_RS10305 +0.8 1.8 flagellar motor switch protein FliG compare
HSERO_RS17220 +0.8 0.9 membrane protein compare
HSERO_RS01575 +0.8 3.0 transcriptional regulator compare
HSERO_RS13610 +0.8 3.0 S-formylglutathione hydrolase compare
HSERO_RS23245 +0.8 2.2 methylmalonate-semialdehyde dehydrogenase compare
HSERO_RS08145 +0.8 0.9 damage-inducible protein compare
HSERO_RS16565 +0.8 2.5 hypothetical protein compare
HSERO_RS22895 +0.8 2.9 membrane protein compare
HSERO_RS05495 +0.8 2.3 hypothetical protein compare
HSERO_RS12240 +0.8 3.5 cytochrome P450 compare
HSERO_RS23455 +0.8 0.7 methylcrotonoyl-CoA carboxylase compare
HSERO_RS14620 +0.8 1.4 chemotaxis protein compare
HSERO_RS17490 +0.8 1.6 AraC family transcriptional regulator compare
HSERO_RS13560 +0.8 2.5 transcriptional regulator compare
HSERO_RS17155 +0.8 0.8 RNA helicase compare
HSERO_RS18685 +0.8 0.7 hypothetical protein compare
HSERO_RS10660 +0.8 1.6 nucleoside-triphosphate diphosphatase compare
HSERO_RS21655 +0.7 2.0 elongation factor G compare
HSERO_RS23905 +0.7 2.9 cytochrome C550 compare
HSERO_RS03690 +0.7 3.9 membrane protein compare
HSERO_RS09875 +0.7 0.8 hypothetical protein compare
HSERO_RS10285 +0.7 1.6 flagellar hook-length control protein compare
HSERO_RS21275 +0.7 2.6 Asp/Glu racemase compare
HSERO_RS11870 +0.7 2.4 hypothetical protein compare
HSERO_RS03720 +0.7 4.1 type VI secretion protein compare
HSERO_RS06530 +0.7 0.7 muconolactone delta-isomerase compare
HSERO_RS06620 +0.7 2.0 (2Fe-2S)-binding protein compare
HSERO_RS16450 +0.7 2.0 colicin V production protein compare
HSERO_RS10255 +0.7 1.3 flagellar biosynthesis protein FliQ compare
HSERO_RS18250 +0.7 1.5 ABC transporter ATP-binding protein compare
HSERO_RS23760 +0.7 1.7 hypothetical protein compare
HSERO_RS10140 +0.7 2.8 flagellar biosynthesis protein FlhB compare
HSERO_RS08790 +0.7 0.8 hypothetical protein compare
HSERO_RS22935 +0.7 2.5 metallothio multi-domain protein compare
HSERO_RS22965 +0.7 1.5 activator of HSP90 ATPase compare
HSERO_RS00890 +0.7 1.5 L-proline ABC transporter, permease component 2 (from data) compare
HSERO_RS03700 +0.7 1.2 type VI secretion protein compare
HSERO_RS18320 +0.7 1.3 LysR family transcriptional regulator compare
HSERO_RS22530 +0.7 1.6 membrane protein compare
HSERO_RS04150 +0.7 0.8 hypothetical protein compare
HSERO_RS15495 +0.7 1.5 ABC transporter permease compare
HSERO_RS22285 +0.7 1.3 GntR family transcriptional regulator compare
HSERO_RS22490 +0.7 3.6 diguanylate cyclase compare
HSERO_RS10910 +0.7 2.2 peptidase compare
HSERO_RS07710 +0.7 0.8 hypothetical protein compare
HSERO_RS15405 +0.7 3.4 LysR family transcriptional regulator compare
HSERO_RS02580 +0.7 1.5 hypothetical protein compare
HSERO_RS03660 +0.7 2.5 diguanylate cyclase compare
HSERO_RS17780 +0.7 2.0 50S rRNA methyltransferase compare
HSERO_RS02205 +0.7 0.7 phosphatase compare
HSERO_RS02130 +0.7 2.2 thiazole synthase compare
HSERO_RS10975 +0.7 2.0 stomatin 2 compare
HSERO_RS02785 +0.7 1.0 hypothetical protein compare
HSERO_RS01365 +0.7 0.9 TetR family transcriptional regulator compare
HSERO_RS14220 +0.7 3.1 protein fixA compare
HSERO_RS08690 +0.7 2.1 alpha/beta hydrolase compare
HSERO_RS09365 +0.7 3.6 phosphate starvation-inducible protein PsiF compare
HSERO_RS03670 +0.7 2.1 hypothetical protein compare
HSERO_RS20435 +0.7 0.8 hypothetical protein compare
HSERO_RS22235 +0.7 1.8 rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) (from data) compare
HSERO_RS00410 +0.7 0.8 phosphoheptose isomerase compare
HSERO_RS16375 +0.7 2.7 cupin compare
HSERO_RS13970 +0.7 2.2 diguanylate cyclase compare
HSERO_RS14510 +0.7 2.1 AraC family transcriptional regulator compare
HSERO_RS09215 +0.7 1.3 D-aminopeptidase compare
HSERO_RS01305 +0.7 1.3 acetate kinase compare
HSERO_RS04970 +0.7 1.0 dioxygenase compare
HSERO_RS06570 +0.7 1.0 endoribonuclease L-PSP compare
HSERO_RS14475 +0.7 1.2 iron ABC transporter ATP-binding protein compare
HSERO_RS02780 +0.7 0.7 hypothetical protein compare
HSERO_RS21015 +0.7 1.8 imidazole glycerol phosphate synthase compare
HSERO_RS01935 +0.7 1.2 3-dehydroquinate dehydratase compare


Specific Phenotypes

For 6 genes in this experiment

For stress Sisomicin sulfate salt in Herbaspirillum seropedicae SmR1

For stress Sisomicin sulfate salt across organisms