Experiment set2IT073 for Burkholderia phytofirmans PsJN

Compare to:

Xylitol carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS02610 -7.7 -5.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17395 -6.7 -2.2 anthranilate synthase subunit II compare
BPHYT_RS04370 -6.2 -2.0 glycosyl transferase compare
BPHYT_RS06555 -6.2 -9.3 ketol-acid reductoisomerase compare
BPHYT_RS33865 -5.9 -9.1 tryptophan synthase alpha chain compare
BPHYT_RS01590 -5.7 -6.8 methionine biosynthesis protein MetW compare
BPHYT_RS09500 -5.7 -8.1 glucose-6-phosphate isomerase compare
BPHYT_RS14845 -5.7 -3.9 cysteine synthase compare
BPHYT_RS08955 -5.7 -6.7 homoserine dehydrogenase compare
BPHYT_RS06545 -5.6 -13.6 acetolactate synthase compare
BPHYT_RS06175 -5.6 -5.3 LPS biosynthesis compare
BPHYT_RS14855 -5.6 -3.1 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS08245 -5.6 -7.7 anti-sigma factor compare
BPHYT_RS14915 -5.4 -6.7 phosphoserine aminotransferase compare
BPHYT_RS33835 -5.4 -11.6 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS05225 -5.3 -10.7 phosphoenolpyruvate carboxylase compare
BPHYT_RS16835 -5.3 -6.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17890 -5.2 -2.9 shikimate kinase compare
BPHYT_RS08850 -5.2 -3.4 transcriptional regulator compare
BPHYT_RS09515 -5.1 -4.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS06900 -5.1 -9.1 aspartate aminotransferase compare
BPHYT_RS33915 -5.0 -11.1 isopropylmalate isomerase compare
BPHYT_RS15920 -5.0 -14.8 argininosuccinate synthase compare
BPHYT_RS17685 -4.9 -12.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS13705 -4.9 -5.9 chorismate synthase compare
BPHYT_RS18320 -4.9 -15.0 orotate phosphoribosyltransferase compare
BPHYT_RS33880 -4.9 -12.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS04385 -4.8 -4.6 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS33900 -4.8 -13.2 3-isopropylmalate dehydrogenase compare
BPHYT_RS17675 -4.7 -3.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16270 -4.7 -5.4 phosphoglycerate kinase compare
BPHYT_RS17405 -4.7 -1.5 indole-3-glycerol phosphate synthase compare
BPHYT_RS15915 -4.7 -13.7 ornithine carbamoyltransferase compare
BPHYT_RS02590 -4.7 -11.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS16245 -4.7 -7.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06190 -4.6 -5.7 heptosyltransferase compare
BPHYT_RS14910 -4.6 -11.3 chorismate mutase compare
BPHYT_RS17390 -4.5 -13.1 anthranilate synthase subunit I compare
BPHYT_RS19785 -4.5 -2.1 chemotaxis protein CheY compare
BPHYT_RS03150 -4.5 -12.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS03640 -4.4 -5.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17400 -4.4 -8.2 anthranilate phosphoribosyltransferase compare
BPHYT_RS16905 -4.4 -9.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17670 -4.4 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17690 -4.4 -15.2 imidazole glycerol phosphate synthase compare
BPHYT_RS12985 -4.3 -3.5 amino acid acetyltransferase compare
BPHYT_RS04285 -4.3 -2.4 rhamnosyltransferase compare
BPHYT_RS17855 -4.3 -18.2 glutamate synthase compare
BPHYT_RS12845 -4.2 -18.6 ATPase compare
BPHYT_RS01595 -4.2 -12.6 homoserine O-acetyltransferase compare
BPHYT_RS08565 -4.2 -1.9 dihydroorotate dehydrogenase compare
BPHYT_RS33875 -4.2 -8.4 tryptophan synthase subunit alpha compare
BPHYT_RS14895 -4.0 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS14190 -4.0 -8.5 carbamoyl phosphate synthase large subunit compare
BPHYT_RS35885 -3.9 -5.6 hypothetical protein compare
BPHYT_RS17700 -3.9 -7.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS06685 -3.9 -3.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS16345 -3.8 -6.5 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS04955 -3.8 -3.0 methionyl-tRNA synthetase compare
BPHYT_RS16255 -3.8 -4.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS17715 -3.8 -8.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS12530 -3.7 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33840 -3.6 -8.0 amidophosphoribosyltransferase compare
BPHYT_RS17885 -3.6 -6.2 3-dehydroquinate synthase compare
BPHYT_RS17380 -3.6 -11.4 ribulose-phosphate 3-epimerase compare
BPHYT_RS06045 -3.6 -7.8 transaldolase compare
BPHYT_RS06405 -3.5 -5.8 phosphoribosylamine--glycine ligase compare
BPHYT_RS12815 -3.5 -7.8 IclR family transcriptional regulator compare
BPHYT_RS03725 -3.4 -2.6 serine hydroxymethyltransferase compare
BPHYT_RS16675 -3.4 -3.1 dihydroorotase compare
BPHYT_RS17680 -3.4 -3.9 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS16840 -3.4 -3.2 transketolase compare
BPHYT_RS33645 -3.3 -6.6 homoserine kinase compare
BPHYT_RS23840 -3.3 -4.6 methyltransferase compare
BPHYT_RS04290 -3.2 -2.9 glycosyl transferase family 2 compare
BPHYT_RS16060 -3.2 -6.7 ribonucleotide-diphosphate reductase subunit alpha compare
BPHYT_RS16735 -3.1 -7.3 phosphogluconate dehydratase compare
BPHYT_RS14900 -3.1 -3.1 prephenate dehydrogenase compare
BPHYT_RS03570 -3.1 -10.8 heat-inducible transcription repressor HrcA compare
BPHYT_RS15710 -3.0 -3.1 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS16340 -2.8 -7.5 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS06195 -2.8 -3.1 membrane protein compare
BPHYT_RS14865 -2.8 -3.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS09160 -2.8 -4.9 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS16050 -2.8 -7.8 xylitol 2-dehydrogenase (EC 1.1.1.9) (from data) conserved
BPHYT_RS03535 -2.7 -6.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS08960 -2.7 -2.1 threonine synthase compare
BPHYT_RS06610 -2.7 -2.4 triosephosphate isomerase compare
BPHYT_RS32260 -2.6 -2.3 hypothetical protein compare
BPHYT_RS34245 -2.6 -4.9 ABC transporter for L-rhamnose/L-fucose/xylitol, ATPase component (from data) compare
BPHYT_RS14195 -2.5 -2.9 carbamoyl phosphate synthase small subunit compare
BPHYT_RS27100 -2.5 -9.2 RNase II stability modulator compare
BPHYT_RS31815 -2.5 -6.4 hypothetical protein compare
BPHYT_RS10100 -2.4 -6.6 dihydroxy-acid dehydratase compare
BPHYT_RS15670 -2.4 -7.5 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS04720 -2.4 -5.8 transcriptional regulator compare
BPHYT_RS34250 -2.3 -7.3 ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) compare
BPHYT_RS34240 -2.3 -4.9 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS16080 -2.3 -6.5 xylulokinase compare
BPHYT_RS16975 -2.3 -6.8 shikimate 5-dehydrogenase compare
BPHYT_RS16470 -2.2 -3.9 DeoR faimly transcriptional regulator compare
BPHYT_RS12150 -2.1 -12.5 PII uridylyl-transferase compare
BPHYT_RS04965 -2.1 -8.8 ATP-binding protein compare
BPHYT_RS34780 -1.9 -4.1 phytoene synthase compare
BPHYT_RS09145 -1.9 -8.3 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS12990 -1.8 -3.2 iron transporter compare
BPHYT_RS33580 -1.8 -5.0 geranyltranstransferase compare
BPHYT_RS12285 -1.8 -7.5 isocitrate lyase compare
BPHYT_RS06350 -1.8 -3.2 chemotaxis protein CheY compare
BPHYT_RS33920 -1.8 -7.7 type II citrate synthase compare
BPHYT_RS16070 -1.8 -3.8 AraC family transcriptional regulator compare
BPHYT_RS04725 -1.8 -7.1 sulfite reductase compare
BPHYT_RS12840 -1.8 -3.6 pyruvate dehydrogenase compare
BPHYT_RS13645 -1.8 -12.5 threonine--tRNA ligase compare
BPHYT_RS15075 -1.7 -2.7 dihydrokaempferol 4-reductase compare
BPHYT_RS05610 -1.7 -10.0 DNA-cytosine methyltransferase compare
BPHYT_RS03625 -1.7 -6.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS25780 -1.7 -1.5 DeoR faimly transcriptional regulator compare
BPHYT_RS13200 -1.7 -2.1 molybdopterin binding oxidoreductase compare
BPHYT_RS04920 -1.6 -3.0 aspartate 1-decarboxylase compare
BPHYT_RS23210 -1.6 -1.8 MFS transporter compare
BPHYT_RS23570 -1.6 -5.5 chemotaxis protein CheY compare
BPHYT_RS15645 -1.6 -8.2 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS09315 -1.6 -1.2 chemotaxis protein CheY compare
BPHYT_RS12465 -1.5 -3.3 inositol monophosphatase compare
BPHYT_RS02135 -1.5 -2.3 glyoxylate reductase compare
BPHYT_RS11685 -1.5 -1.4 phasin family protein compare
BPHYT_RS15650 -1.5 -8.7 quinolinate synthetase compare
BPHYT_RS02865 -1.5 -3.2 hypothetical protein compare
BPHYT_RS22360 -1.5 -2.7 response regulator receiver compare
BPHYT_RS06530 -1.5 -1.3 membrane protein compare
BPHYT_RS02005 -1.5 -2.3 diguanylate phosphodiesterase compare
BPHYT_RS22910 -1.5 -1.3 hypothetical protein compare
BPHYT_RS31150 -1.5 -4.5 transcriptional regulator compare
BPHYT_RS17725 -1.5 -6.1 BolA family transcriptional regulator compare
BPHYT_RS28705 -1.5 -1.6 IclR family transcriptional regulator compare
BPHYT_RS29920 -1.4 -1.2 hypothetical protein compare
BPHYT_RS19000 -1.4 -5.7 chemotaxis protein CheA compare
BPHYT_RS17920 -1.4 -1.5 protein CyaY compare
BPHYT_RS06375 -1.4 -5.3 ribonuclease compare
BPHYT_RS06325 -1.4 -3.4 ATPase compare
BPHYT_RS02955 -1.4 -7.9 formyltetrahydrofolate deformylase compare
BPHYT_RS00770 -1.3 -1.2 conjugal transfer protein TraC compare
BPHYT_RS02860 -1.3 -1.1 membrane protein compare
BPHYT_RS28240 -1.3 -2.9 L-rhamnonate dehydratase compare
BPHYT_RS04730 -1.3 -3.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS33950 -1.3 -8.8 GntR family transcriptional regulator compare
BPHYT_RS18340 -1.3 -1.6 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS33610 -1.3 -1.3 DNA polymerase I compare
BPHYT_RS14920 -1.3 -1.6 hypothetical protein compare
BPHYT_RS08950 -1.3 -4.3 aminotransferase compare
BPHYT_RS10540 -1.3 -1.5 secretion protein compare
BPHYT_RS33905 -1.3 -0.6 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS17520 -1.3 -3.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS16135 -1.3 -4.1 ABC transporter ATP-binding protein compare
BPHYT_RS27060 -1.3 -1.7 photosystem reaction center subunit H compare
BPHYT_RS11125 -1.2 -1.5 alkylhydroperoxidase compare
BPHYT_RS06345 -1.2 -5.7 sensor histidine kinase compare
BPHYT_RS06550 -1.2 -2.3 acetolactate synthase compare
BPHYT_RS29915 -1.2 -3.5 GntR family transcriptional regulator compare
BPHYT_RS06075 -1.2 -4.7 hypothetical protein compare
BPHYT_RS23770 -1.2 -1.9 GntR family transcriptional regulator compare
BPHYT_RS21460 -1.2 -2.3 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS22695 -1.2 -6.5 TetR family transcriptional regulator compare
BPHYT_RS26925 -1.2 -1.8 NIPSNAP family containing protein compare
BPHYT_RS28870 -1.2 -2.4 MarR family transcriptional regulator compare
BPHYT_RS11285 -1.2 -2.6 LacI family transcription regulator compare
BPHYT_RS12615 -1.2 -1.4 dihydrodipicolinate synthase compare
BPHYT_RS08020 -1.2 -3.5 hypothetical protein compare
BPHYT_RS18760 -1.2 -2.0 flagellar biosynthesis protein FliT compare
BPHYT_RS18995 -1.2 -4.2 purine-binding chemotaxis protein compare
BPHYT_RS19905 -1.2 -1.9 membrane protein compare
BPHYT_RS33155 -1.1 -2.0 hypothetical protein compare
BPHYT_RS03400 -1.1 -1.1 ATP-dependent DNA helicase RecG compare
BPHYT_RS03110 -1.1 -2.2 MarR family transcriptional regulator compare
BPHYT_RS32155 -1.1 -3.0 type IV secretion system protein VirB11 compare
BPHYT_RS17095 -1.1 -1.7 proline--tRNA ligase compare
BPHYT_RS15640 -1.1 -8.1 L-aspartate oxidase compare
BPHYT_RS06535 -1.1 -2.7 membrane protein compare
BPHYT_RS02330 -1.1 -2.3 IclR family transcriptional regulator compare
BPHYT_RS08355 -1.1 -1.6 hypothetical protein compare
BPHYT_RS34490 -1.1 -1.0 hypothetical protein compare
BPHYT_RS32200 -1.1 -0.9 lytic transglycosylase compare
BPHYT_RS06600 -1.0 -1.5 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS03645 -1.0 -1.6 tRNA dimethylallyltransferase compare
BPHYT_RS09545 -1.0 -1.8 peptide methionine sulfoxide reductase compare
BPHYT_RS10470 -1.0 -1.8 hypothetical protein compare
BPHYT_RS13390 -1.0 -1.0 IclR family transcriptional regulator compare
BPHYT_RS01660 -1.0 -2.1 hypothetical protein compare
BPHYT_RS12055 -1.0 -7.9 phosphoenolpyruvate synthase compare
BPHYT_RS02885 -1.0 -5.4 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS14945 -1.0 -3.6 phosphoglycolate phosphatase compare
BPHYT_RS23650 -1.0 -0.8 hypothetical protein compare
BPHYT_RS29750 -1.0 -3.9 phosphoenolpyruvate phosphomutase compare
BPHYT_RS13605 -1.0 -0.8 tRNA-Pro compare
BPHYT_RS26355 -1.0 -1.5 hypothetical protein compare
BPHYT_RS36480 -1.0 -2.0 hypothetical protein compare
BPHYT_RS05960 -1.0 -4.9 endoribonuclease L-PSP compare
BPHYT_RS14105 -1.0 -6.2 exopolyphosphatase compare
BPHYT_RS02245 -1.0 -2.7 MerR family transcriptional regulator compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Xylitol in Burkholderia phytofirmans PsJN

For carbon source Xylitol across organisms