Experiment set2IT072 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A pH7

200 most detrimental genes:

  gene name fitness t score description  
LRK54_RS17135 +1.8 3.0 hypothetical protein compare
LRK54_RS01295 +1.1 1.5 DUF6165 family protein compare
LRK54_RS15500 +1.0 3.8 hypothetical protein compare
LRK54_RS07460 +0.9 2.5 hypothetical protein compare
LRK54_RS16150 +0.9 2.3 cell wall hydrolase compare
LRK54_RS11585 +0.9 8.3 cAMP-activated global transcriptional regulator CRP compare
LRK54_RS16575 +0.9 8.4 GGDEF domain-containing phosphodiesterase compare
LRK54_RS04160 +0.9 4.5 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
LRK54_RS04965 +0.8 6.5 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LRK54_RS12875 +0.8 6.4 RNA polymerase factor sigma-54 compare
LRK54_RS07180 +0.7 1.5 dethiobiotin synthase compare
LRK54_RS16255 +0.7 2.1 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS14595 +0.7 4.0 alpha/beta hydrolase compare
LRK54_RS02900 +0.7 6.4 C40 family peptidase compare
LRK54_RS15765 +0.7 1.4 hypothetical protein compare
LRK54_RS14490 +0.7 2.0 ABC transporter ATP-binding protein compare
LRK54_RS15720 +0.7 1.2 ATP-binding cassette domain-containing protein compare
LRK54_RS14260 +0.7 2.4 Spx/MgsR family RNA polymerase-binding regulatory protein compare
LRK54_RS05485 +0.6 5.8 serine hydrolase compare
LRK54_RS06420 +0.6 1.5 hypothetical protein compare
LRK54_RS13430 +0.6 3.4 flagellar basal-body rod protein FlgG compare
LRK54_RS07985 +0.6 2.4 ATP-binding protein compare
LRK54_RS13505 +0.6 3.4 flagellar assembly protein FliH compare
LRK54_RS14495 +0.6 4.9 ABC transporter permease subunit compare
LRK54_RS10620 +0.6 1.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
LRK54_RS12115 +0.6 2.0 GIY-YIG nuclease family protein compare
LRK54_RS13435 +0.6 3.2 flagellar basal body L-ring protein FlgH compare
LRK54_RS11115 +0.6 5.6 TonB-dependent receptor compare
LRK54_RS17025 +0.6 1.1 cold-shock protein compare
LRK54_RS10660 +0.6 0.7 DUF4156 domain-containing protein compare
LRK54_RS15555 +0.6 1.8 YciI family protein compare
LRK54_RS08680 +0.5 4.3 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK54_RS11120 +0.5 4.9 tetratricopeptide repeat-containing sulfotransferase family protein compare
LRK54_RS13420 +0.5 4.3 flagellar hook protein FlgE compare
LRK54_RS04245 +0.5 1.5 BON domain-containing protein compare
LRK54_RS13555 +0.5 2.5 flagellar biosynthetic protein FliR compare
LRK54_RS13485 +0.5 4.4 sigma-54-dependent Fis family transcriptional regulator compare
LRK54_RS03320 +0.5 2.7 ribonuclease HII compare
LRK54_RS13970 +0.5 1.4 MoaD/ThiS family protein compare
LRK54_RS12165 +0.5 4.6 nucleoside permease compare
LRK54_RS13410 +0.5 2.9 flagellar basal body rod protein FlgC compare
LRK54_RS09215 +0.5 4.3 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS05020 +0.5 4.2 sigma-54 dependent transcriptional regulator compare
LRK54_RS04385 +0.5 4.1 ATP-binding protein compare
LRK54_RS13500 +0.5 3.3 flagellar motor switch protein FliG compare
LRK54_RS06490 +0.5 4.0 D-alanyl-D-alanine carboxypeptidase compare
LRK54_RS01610 +0.5 1.4 ATP phosphoribosyltransferase compare
LRK54_RS12045 +0.5 1.7 DUF1611 domain-containing protein compare
LRK54_RS02710 +0.5 0.4 pentapeptide MXKDX repeat protein compare
LRK54_RS13550 +0.5 3.2 flagellar biosynthesis protein FliQ compare
LRK54_RS14500 +0.5 4.1 GldG family protein compare
LRK54_RS13510 +0.4 3.1 flagellar protein export ATPase FliI compare
LRK54_RS01515 +0.4 2.1 NUDIX hydrolase compare
LRK54_RS15565 +0.4 1.9 glutathione S-transferase family protein compare
LRK54_RS00565 +0.4 1.0 RNA polymerase sigma factor compare
LRK54_RS13495 +0.4 3.4 flagellar M-ring protein FliF compare
LRK54_RS04990 +0.4 4.0 HAMP domain-containing histidine kinase compare
LRK54_RS03985 +0.4 2.9 TIGR00266 family protein compare
LRK54_RS17210 +0.4 1.7 hypothetical protein compare
LRK54_RS07260 +0.4 2.5 tetratricopeptide repeat protein compare
LRK54_RS04790 +0.4 2.3 adenine phosphoribosyltransferase compare
LRK54_RS17080 +0.4 1.1 hypothetical protein compare
LRK54_RS13615 +0.4 2.2 DUF2802 domain-containing protein compare
LRK54_RS05060 +0.4 1.3 carbohydrate kinase compare
LRK54_RS13540 +0.4 0.8 flagellar biosynthetic protein FliO compare
LRK54_RS17130 +0.4 1.9 IMPACT family protein compare
LRK54_RS04100 +0.4 0.8 ATP-binding cassette domain-containing protein compare
LRK54_RS10195 +0.4 1.1 hypothetical protein compare
LRK54_RS07230 +0.4 2.9 endonuclease/exonuclease/phosphatase family protein compare
LRK54_RS11875 +0.4 3.2 VWA domain-containing protein compare
LRK54_RS02695 +0.4 1.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
LRK54_RS13380 +0.4 2.7 flagellar protein FlgN compare
LRK54_RS15485 +0.4 0.5 hypothetical protein compare
LRK54_RS04315 +0.4 0.6 WGR domain-containing protein compare
LRK54_RS04285 +0.4 3.2 kinase compare
LRK54_RS09420 +0.4 1.3 RNA polymerase sigma factor compare
LRK54_RS06960 +0.4 1.3 hypothetical protein compare
LRK54_RS13925 +0.4 1.9 deoxyribose-phosphate aldolase compare
LRK54_RS13425 +0.4 1.1 flagellar basal-body rod protein FlgF compare
LRK54_RS11310 +0.4 1.9 hypothetical protein compare
LRK54_RS04255 +0.4 2.8 type IV pilus twitching motility protein PilT compare
LRK54_RS16285 +0.4 1.3 hypothetical protein compare
LRK54_RS04395 +0.4 3.2 sigma-54 dependent transcriptional regulator compare
LRK54_RS04190 +0.4 2.0 response regulator compare
LRK54_RS08380 +0.4 2.0 type II toxin-antitoxin system HipA family toxin YjjJ compare
LRK54_RS07065 +0.4 2.9 bile acid:sodium symporter compare
LRK54_RS14275 +0.4 1.6 twin-arginine translocase TatA/TatE family subunit compare
LRK54_RS08385 +0.4 1.7 GntR family transcriptional regulator compare
LRK54_RS10270 +0.4 1.0 ComF family protein compare
LRK54_RS06530 +0.4 3.5 carbohydrate kinase family protein compare
LRK54_RS10330 +0.4 1.2 3-isopropylmalate dehydratase small subunit compare
LRK54_RS16770 +0.4 2.7 methyltransferase domain-containing protein compare
LRK54_RS01705 +0.4 3.4 fimbrial protein FimV compare
LRK54_RS15215 +0.4 1.9 DUF2059 domain-containing protein compare
LRK54_RS07990 +0.4 1.2 conjugal transfer protein TraR compare
LRK54_RS15065 +0.4 3.3 aspartyl/asparaginyl beta-hydroxylase domain-containing protein compare
LRK54_RS16760 +0.4 2.8 transglycosylase SLT domain-containing protein compare
LRK54_RS13565 +0.4 3.0 flagellar biosynthesis protein FlhA compare
LRK54_RS01145 +0.4 2.2 PIG-L family deacetylase compare
LRK54_RS13580 +0.4 3.0 RNA polymerase sigma factor FliA compare
LRK54_RS02215 +0.4 2.5 GspH/FimT family pseudopilin compare
LRK54_RS16360 +0.4 0.7 NAD(+)--rifampin ADP-ribosyltransferase compare
LRK54_RS01910 +0.4 1.1 hypothetical protein compare
LRK54_RS14485 +0.4 3.2 polyketide cyclase compare
LRK54_RS14480 +0.4 2.2 response regulator transcription factor compare
LRK54_RS03860 +0.4 1.8 nitroreductase compare
LRK54_RS06370 +0.3 1.4 benenodin family lasso peptide compare
LRK54_RS05945 +0.3 1.2 hypothetical protein compare
LRK54_RS00835 +0.3 2.0 LysR substrate-binding domain-containing protein compare
LRK54_RS04185 +0.3 0.7 chemotaxis protein CheW compare
LRK54_RS10365 +0.3 1.8 homoserine dehydrogenase compare
LRK54_RS17770 +0.3 1.6 hypothetical protein compare
LRK54_RS13390 +0.3 2.5 flagellar basal body P-ring formation protein FlgA compare
LRK54_RS04960 +0.3 2.2 peptidoglycan editing factor PgeF compare
LRK54_RS05515 +0.3 3.2 adenylyl-sulfate kinase compare
LRK54_RS14000 +0.3 1.3 nitrate reductase molybdenum cofactor assembly chaperone compare
LRK54_RS09980 +0.3 1.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
LRK54_RS06240 +0.3 0.5 hypothetical protein compare
LRK54_RS13680 +0.3 1.9 STAS domain-containing protein compare
LRK54_RS01425 +0.3 1.9 VOC family protein compare
LRK54_RS03415 +0.3 2.3 mismatch-specific DNA-glycosylase compare
LRK54_RS07575 +0.3 1.8 K+/H+ antiporter subunit F compare
LRK54_RS14150 +0.3 1.4 ATP-binding protein compare
LRK54_RS07935 +0.3 1.9 dienelactone hydrolase family protein compare
LRK54_RS18105 +0.3 1.4 DNA oxidative demethylase AlkB compare
LRK54_RS13620 +0.3 0.9 hypothetical protein compare
LRK54_RS03920 +0.3 0.7 hypothetical protein compare
LRK54_RS01035 +0.3 2.9 tRNA pseudouridine(55) synthase TruB compare
LRK54_RS16295 +0.3 2.4 DNA-3-methyladenine glycosylase 2 compare
LRK54_RS13545 +0.3 1.7 flagellar type III secretion system pore protein FliP compare
LRK54_RS17660 +0.3 1.6 hypothetical protein compare
LRK54_RS07940 +0.3 2.4 histidine kinase compare
LRK54_RS08575 +0.3 1.7 diphosphomevalonate decarboxylase compare
LRK54_RS02190 +0.3 2.8 type IV pilin protein compare
LRK54_RS05520 +0.3 2.6 sulfate adenylyltransferase subunit CysD compare
LRK54_RS13560 +0.3 2.6 flagellar biosynthesis protein FlhB compare
LRK54_RS15080 +0.3 1.2 glycine cleavage system protein R compare
LRK54_RS10825 +0.3 2.3 GldG family protein compare
LRK54_RS02025 +0.3 1.7 VOC family protein compare
LRK54_RS15930 +0.3 2.4 class I SAM-dependent methyltransferase compare
LRK54_RS06845 +0.3 1.6 hypothetical protein compare
LRK54_RS12170 +0.3 1.6 uracil-DNA glycosylase family protein compare
LRK54_RS13405 +0.3 0.8 flagellar basal body rod protein FlgB compare
LRK54_RS16010 +0.3 1.4 ribonuclease D compare
LRK54_RS07195 +0.3 0.5 hypothetical protein compare
LRK54_RS17400 +0.3 0.6 hypothetical protein compare
LRK54_RS10500 +0.3 0.9 glycerophosphodiester phosphodiesterase compare
LRK54_RS14475 +0.3 2.5 sensor histidine kinase compare
LRK54_RS08335 +0.3 1.1 MbcA/ParS/Xre antitoxin family protein compare
LRK54_RS11235 +0.3 2.4 hypothetical protein compare
LRK54_RS12845 +0.3 2.2 phosphoenolpyruvate--protein phosphotransferase compare
LRK54_RS07155 +0.3 2.4 ankyrin repeat domain-containing protein compare
LRK54_RS11025 +0.3 1.6 hypothetical protein compare
LRK54_RS07040 +0.3 1.5 GatB/YqeY domain-containing protein compare
LRK54_RS11885 +0.3 2.5 BatD family protein compare
LRK54_RS07255 +0.3 2.4 sulfotransferase compare
LRK54_RS02200 +0.3 2.6 PilX N-terminal domain-containing pilus assembly protein compare
LRK54_RS09105 +0.3 1.3 energy transducer TonB compare
LRK54_RS04180 +0.3 2.2 methyl-accepting chemotaxis protein compare
LRK54_RS06660 +0.3 1.9 DUF2333 family protein compare
LRK54_RS17760 +0.3 0.6 cation transporter compare
LRK54_RS16245 +0.3 1.6 ABC transporter ATP-binding protein compare
LRK54_RS12500 +0.3 1.7 DUF58 domain-containing protein compare
LRK54_RS09745 +0.3 1.7 hypothetical protein compare
LRK54_RS06155 +0.3 0.5 cysteine dioxygenase compare
LRK54_RS16565 +0.3 2.6 cbb3-type cytochrome c oxidase subunit I compare
LRK54_RS07185 +0.3 1.7 hypothetical protein compare
LRK54_RS13605 +0.3 2.1 flagellar motor protein MotD compare
LRK54_RS11845 +0.3 2.5 type 4a pilus biogenesis protein PilO compare
LRK54_RS06205 +0.3 1.7 HAD family hydrolase compare
LRK54_RS13525 +0.3 1.7 flagellar basal body-associated FliL family protein compare
LRK54_RS01750 +0.3 2.5 transglycosylase SLT domain-containing protein compare
LRK54_RS16800 +0.3 1.1 hypothetical protein compare
LRK54_RS14195 +0.3 1.8 ATP-binding cassette domain-containing protein compare
LRK54_RS06360 +0.3 1.6 GntR family transcriptional regulator compare
LRK54_RS16270 +0.3 1.8 hypothetical protein compare
LRK54_RS12325 +0.3 1.8 histone deacetylase family protein compare
LRK54_RS00915 +0.3 1.9 LysR substrate-binding domain-containing protein compare
LRK54_RS07945 +0.3 2.0 LytTR family DNA-binding domain-containing protein compare
LRK54_RS11930 +0.3 1.7 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS03950 +0.3 2.2 type II secretion system F family protein compare
LRK54_RS15690 +0.3 1.4 DksA/TraR family C4-type zinc finger protein compare
LRK54_RS09180 +0.3 2.5 phosphomannomutase/phosphoglucomutase compare
LRK54_RS12180 +0.3 1.9 YraN family protein compare
LRK54_RS00980 +0.3 2.2 DnaJ domain-containing protein compare
LRK54_RS00985 +0.3 1.9 Hsp20/alpha crystallin family protein compare
LRK54_RS14805 +0.3 1.7 tRNA threonylcarbamoyladenosine dehydratase compare
LRK54_RS15680 +0.3 1.4 OsmC family protein compare
LRK54_RS07750 +0.3 1.0 DUF302 domain-containing protein compare
LRK54_RS06175 +0.3 1.9 hypothetical protein compare
LRK54_RS08250 +0.3 1.3 YbhB/YbcL family Raf kinase inhibitor-like protein compare
LRK54_RS15435 +0.3 1.5 LysR substrate-binding domain-containing protein compare
LRK54_RS07595 +0.3 2.3 monovalent cation/H+ antiporter subunit A compare
LRK54_RS07705 +0.3 1.7 glucokinase compare
LRK54_RS11870 +0.3 1.8 DUF4381 domain-containing protein compare
LRK54_RS07160 +0.3 0.9 monovalent cation:proton antiporter-2 (CPA2) family protein compare
LRK54_RS12280 +0.3 2.2 M23 family metallopeptidase compare
LRK54_RS04085 +0.3 2.0 HAMP domain-containing histidine kinase compare
LRK54_RS17355 +0.3 2.0 universal stress protein compare
LRK54_RS15625 +0.2 1.5 5-demethoxyubiquinol-8 5-hydroxylase UbiM compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in pH experiments