Experiment set2IT072 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Lysine carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
AO356_14245 -5.7 -5.6 AsnC family transcriptional regulator conserved
AO356_14230 -4.7 -14.8 lysine 2-monooxygenase (EC 1.13.12.2) (from data) conserved
AO356_10850 -4.5 -16.9 acyl-CoA dehydrogenase conserved
AO356_10845 -4.0 -16.8 succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) (from data) conserved
AO356_21640 -4.0 -6.0 acetyl-CoA C-acetyltransferase [EC: 2.3.1.9] (from data) conserved
AO356_14225 -3.5 -9.4 5-aminopentanamidase (EC 3.5.1.30) (from data) conserved
AO356_10855 -3.4 -14.5 LysR family transcriptional regulator conserved
AO356_10715 -2.8 -11.6 4-aminobutyrate aminotransferase compare
AO356_01105 -2.7 -9.4 putative hydrolase, required for lysine catabolism (from data) conserved
AO356_13905 -2.6 -11.5 N-methylproline demethylase compare
AO356_13915 -2.6 -8.1 electron transfer flavoprotein subunit alpha compare
AO356_22970 -2.5 -5.5 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) compare
AO356_05500 -2.5 -10.0 ABC transporter for L-Lysine, permease component 1 (from data) conserved
AO356_05495 -2.3 -8.4 ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) conserved
AO356_05505 -2.2 -10.6 ABC transporter for L-Lysine, permease component 2 (from data) conserved
AO356_05515 -2.1 -5.5 ABC transporter for L-Lysine, ATPase component (from data) compare
AO356_09905 -2.0 -10.6 ABC transporter for L-Lysine, permease component 1 (from data) conserved
AO356_13910 -1.9 -7.8 (Fe-S)-binding protein compare
AO356_09910 -1.8 -8.1 ABC transporter for L-Lysine, permease component 2 (from data) compare
AO356_09900 -1.8 -8.5 ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) compare
AO356_14235 -1.7 -6.7 addiction module toxin RelE compare
AO356_08510 -1.7 -8.6 aldehyde dehydrogenase conserved
AO356_08515 -1.6 -8.2 LysR family transcriptional regulator compare
AO356_04995 -1.4 -6.7 LysR family transcriptional regulator compare
AO356_04605 -1.4 -5.6 histidine kinase compare
AO356_08505 -1.4 -8.8 FAD-dependent oxidoreductase conserved
AO356_16680 -1.3 -6.2 phosphate acetyltransferase compare
AO356_14240 -1.2 -6.4 transcriptional regulator compare
AO356_14390 -1.2 -5.7 spermidine/putrescine ABC transporter substrate-binding protein compare
AO356_14385 -1.1 -5.2 spermidine/putrescine ABC transporter ATP-binding protein compare
AO356_01580 -1.0 -5.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
AO356_07250 +1.1 6.6 porin compare
AO356_09875 +1.1 7.3 hypothetical protein compare
AO356_11100 +1.1 7.8 L-asparaginase (EC 3.5.1.1) (from data) compare
AO356_07245 +1.2 6.8 peptide ABC transporter substrate-binding protein compare
AO356_13140 +1.6 5.1 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) compare
AO356_09890 +1.6 11.8 hypothetical protein compare
AO356_07840 +1.9 7.9 hypothetical protein compare
AO356_14375 +2.0 6.5 histidine kinase compare
AO356_07275 +2.0 14.3 peptide ABC transporter ATP-binding protein compare
AO356_07260 +2.0 14.7 peptide ABC transporter permease compare
AO356_07270 +2.1 10.4 peptide ABC transporter ATP-binding protein compare
AO356_07240 +2.2 18.1 peptide ABC transporter substrate-binding protein compare
AO356_07265 +2.3 13.9 peptide transporter compare
AO356_12045 +2.3 7.4 homocysteine methyltransferase compare
AO356_01565 +3.0 10.9 MerR family transcriptional regulator compare
AO356_18715 +4.3 15.2 L-Arginine ABC transporter, ATPase component (from data) conserved
AO356_18710 +4.4 38.4 L-Arginine ABC transporter, permease component 1 (from data) conserved
AO356_18705 +4.4 31.3 L-Arginine ABC transporter, permease component 2 (from data) conserved
AO356_18700 +5.3 24.9 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) compare


Specific phenotypes for carbon source L-Lysine across organisms