Experiment set2IT072 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Lysine carbon source

200 most important genes:

  gene name fitness t score description  
AO356_14245 -5.7 -5.6 AsnC family transcriptional regulator conserved
AO356_14435 -4.9 -5.8 anthranilate phosphoribosyltransferase compare
AO356_21440 -4.7 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_14230 -4.7 -14.8 lysine 2-monooxygenase (EC 1.13.12.2) (from data) conserved
AO356_22080 -4.6 -11.4 isocitrate lyase compare
AO356_10850 -4.5 -16.9 acyl-CoA dehydrogenase conserved
AO356_21405 -4.4 -5.2 3-isopropylmalate dehydratase compare
AO356_12020 -4.3 -12.5 pyruvate carboxylase subunit A compare
AO356_09815 -4.2 -7.1 imidazoleglycerol-phosphate dehydratase compare
AO356_06965 -4.2 -8.5 histidinol dehydrogenase compare
AO356_14420 -4.2 -13.5 anthranilate synthase compare
AO356_15165 -4.2 -2.9 protein cII compare
AO356_10915 -4.1 -10.7 tryptophan synthase subunit beta compare
AO356_13405 -4.1 -10.4 methionine biosynthesis protein MetW compare
AO356_10300 -4.1 -7.4 3-phosphoglycerate dehydrogenase compare
AO356_13250 -4.1 -9.0 dihydroxy-acid dehydratase compare
AO356_12025 -4.0 -15.4 pyruvate carboxylase subunit B compare
AO356_09520 -4.0 -5.5 phosphoribosyl-AMP cyclohydrolase compare
AO356_10845 -4.0 -16.8 succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) (from data) conserved
AO356_06550 -4.0 -12.3 2-isopropylmalate synthase compare
AO356_18020 -4.0 -2.8 ATP-dependent DNA helicase RuvA compare
AO356_13410 -4.0 -12.0 homoserine O-acetyltransferase compare
AO356_21640 -4.0 -6.0 acetyl-CoA C-acetyltransferase [EC: 2.3.1.9] (from data) conserved
AO356_21400 -4.0 -7.5 isopropylmalate isomerase compare
AO356_14100 -3.9 -10.8 malate synthase G compare
AO356_09540 -3.9 -2.7 twin-arginine protein translocation system subunit TatC compare
AO356_21465 -3.9 -4.6 amidophosphoribosyltransferase compare
AO356_01555 -3.9 -9.3 acyl-CoA dehydrogenase compare
AO356_10170 -3.9 -3.7 chemotaxis protein CheY compare
AO356_12780 -3.8 -7.8 argininosuccinate lyase compare
AO356_02265 -3.8 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_18325 -3.8 -13.3 argininosuccinate synthase compare
AO356_10910 -3.8 -9.5 tryptophan synthase subunit alpha compare
AO356_21415 -3.8 -10.6 3-isopropylmalate dehydrogenase compare
AO356_08635 -3.7 -9.9 ATP phosphoribosyltransferase regulatory subunit compare
AO356_16170 -3.7 -10.7 acetolactate synthase 3 catalytic subunit compare
AO356_09525 -3.7 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_16180 -3.7 -14.2 ketol-acid reductoisomerase compare
AO356_14440 -3.7 -4.2 indole-3-glycerol-phosphate synthase compare
AO356_09810 -3.6 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
AO356_16175 -3.6 -9.0 acetolactate synthase 3 regulatory subunit compare
AO356_06970 -3.6 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_21470 -3.5 -8.6 O-succinylhomoserine sulfhydrylase compare
AO356_01745 -3.5 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_08880 -3.5 -7.8 glycosyl transferase compare
AO356_14225 -3.5 -9.4 5-aminopentanamidase (EC 3.5.1.30) (from data) conserved
AO356_19060 -3.5 -16.5 (p)ppGpp synthetase compare
AO356_13605 -3.4 -8.8 5,10-methylenetetrahydrofolate reductase compare
AO356_10855 -3.4 -14.5 LysR family transcriptional regulator conserved
AO356_16075 -3.4 -4.7 Fis family transcriptional regulator compare
AO356_01750 -3.4 -3.3 ATP-dependent Clp protease proteolytic subunit compare
AO356_18275 -3.4 -12.9 ornithine carbamoyltransferase compare
AO356_09800 -3.4 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_12895 -3.4 -21.1 polyphosphate kinase compare
AO356_24845 -3.4 -3.3 ATPase compare
AO356_01245 -3.3 -10.5 glycogen branching protein compare
AO356_28595 -3.3 -4.2 transcriptional regulator compare
AO356_08735 -3.3 -12.4 phosphoserine phosphatase compare
AO356_10185 -3.2 -8.1 glutamate--cysteine ligase compare
AO356_09795 -3.2 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
AO356_17020 -3.2 -4.9 cytochrome D ubiquinol oxidase subunit III compare
AO356_17075 -3.2 -2.2 cytochrome C compare
AO356_03375 -3.1 -3.0 ExsB family protein compare
AO356_07915 -3.0 -2.9 exodeoxyribonuclease V subunit beta compare
AO356_06575 -3.0 -3.5 outer membrane protein assembly factor BamB compare
AO356_08870 -2.9 -10.5 polymerase compare
AO356_17520 -2.9 -2.0 phosphoribosylformylglycinamidine synthase compare
AO356_19090 -2.9 -3.9 phosphoribosylaminoimidazole synthetase compare
AO356_12525 -2.9 -10.1 acetylglutamate kinase compare
AO356_14505 -2.9 -3.4 peptidase M23 compare
AO356_16095 -2.9 -8.7 molecular chaperone DnaK compare
AO356_03810 -2.9 -5.1 anti-anti-sigma factor compare
AO356_13685 -2.9 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_06990 -2.9 -4.7 toluene tolerance protein compare
AO356_10715 -2.8 -11.6 4-aminobutyrate aminotransferase compare
AO356_13085 -2.8 -9.1 N-acetylglutamate synthase compare
AO356_00560 -2.8 -2.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_11420 -2.8 -9.9 histidine kinase compare
AO356_04285 -2.8 -13.4 isocitrate dehydrogenase compare
AO356_08640 -2.8 -5.0 membrane protease HflC compare
AO356_04570 -2.8 -6.5 RNA polymerase subunit sigma compare
AO356_12520 -2.8 -3.2 orotate phosphoribosyltransferase compare
AO356_01105 -2.7 -9.4 putative hydrolase, required for lysine catabolism (from data) conserved
AO356_16185 -2.7 -5.5 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_13920 -2.7 -4.5 electron transfer flavoprotein subunit beta compare
AO356_07005 -2.7 -2.7 ABC transporter ATP-binding protein compare
AO356_19420 -2.7 -2.6 septum formation inhibitor compare
AO356_13175 -2.6 -6.3 spermidine/putrescine ABC transporter permease compare
AO356_07195 -2.6 -7.5 GntR family transcriptional regulator compare
AO356_13905 -2.6 -11.5 N-methylproline demethylase compare
AO356_11315 -2.6 -1.8 shikimate dehydrogenase compare
AO356_19520 -2.6 -3.6 isochorismatase compare
AO356_13915 -2.6 -8.1 electron transfer flavoprotein subunit alpha compare
AO356_12380 -2.6 -8.1 ATP-dependent DNA helicase RecG compare
AO356_14400 -2.6 -5.2 polyamine ABC transporter permease compare
AO356_30345 -2.6 -6.1 IclR family transcriptional regulator compare
AO356_17070 -2.6 -2.5 cytochrome B compare
AO356_19050 -2.6 -3.5 cysteine synthase compare
AO356_04330 -2.6 -7.0 allophanate hydrolase compare
AO356_06385 -2.5 -4.5 recombinase XerD compare
AO356_20175 -2.5 -2.4 3-oxoacyl-ACP synthase compare
AO356_16050 -2.5 -3.4 glucose-6-phosphate isomerase compare
AO356_22970 -2.5 -5.5 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) compare
AO356_05500 -2.5 -10.0 ABC transporter for L-Lysine, permease component 1 (from data) conserved
AO356_14135 -2.5 -13.4 biotin synthase compare
AO356_03355 -2.5 -5.2 hypothetical protein compare
AO356_14430 -2.5 -8.1 anthranilate synthase compare
AO356_00870 -2.5 -2.4 tRNA-Pro compare
AO356_11450 -2.4 -2.8 cytochrome C compare
AO356_18025 -2.4 -3.5 ATP-dependent DNA helicase RuvB compare
AO356_00555 -2.4 -8.3 sulfite reductase compare
AO356_12515 -2.4 -3.2 exodeoxyribonuclease III compare
AO356_08905 -2.4 -3.9 glycosyl transferase compare
AO356_03500 -2.3 -4.6 3-oxoacyl-ACP reductase compare
AO356_22150 -2.3 -9.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO356_08875 -2.3 -3.4 toluene tolerance protein compare
AO356_10350 -2.3 -11.6 phosphoenolpyruvate-protein phosphotransferase compare
AO356_01740 -2.3 -3.7 DNA-binding protein compare
AO356_05495 -2.3 -8.4 ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) conserved
AO356_22200 -2.2 -8.2 sirohydrochlorin ferrochelatase compare
AO356_12725 -2.2 -4.7 recombinase XerC compare
AO356_23155 -2.2 -9.4 RpiR family transcriptional regulator compare
AO356_10345 -2.2 -6.3 RNA pyrophosphohydrolase compare
AO356_07910 -2.2 -2.6 exodeoxyribonuclease V subunit alpha compare
AO356_08930 -2.2 -3.1 heptose kinase compare
AO356_03345 -2.2 -10.4 hypothetical protein compare
AO356_10340 -2.2 -10.7 phosphoserine phosphatase compare
AO356_08235 -2.2 -8.4 histidine kinase compare
AO356_11055 -2.2 -4.3 long-chain acyl-CoA thioester hydrolase compare
AO356_18970 -2.2 -8.7 histidine kinase compare
AO356_05505 -2.2 -10.6 ABC transporter for L-Lysine, permease component 2 (from data) conserved
AO356_08890 -2.2 -8.4 glycosyltransferase compare
AO356_01255 -2.1 -9.4 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO356_14155 -2.1 -8.5 dethiobiotin synthetase compare
AO356_03360 -2.1 -3.4 hypothetical protein compare
AO356_05515 -2.1 -5.5 ABC transporter for L-Lysine, ATPase component (from data) compare
AO356_07390 -2.1 -2.4 polyribonucleotide nucleotidyltransferase compare
AO356_10000 -2.1 -5.5 hypothetical protein compare
AO356_25150 -2.1 -3.1 molybdenum cofactor biosynthesis protein B compare
AO356_13170 -2.1 -11.7 spermidine/putrescine ABC transporter permease compare
AO356_19085 -2.1 -6.8 phosphoribosylglycinamide formyltransferase compare
AO356_19795 -2.1 -3.6 glycerol-3-phosphate dehydrogenase compare
AO356_09765 -2.1 -2.4 sulfurtransferase compare
AO356_14395 -2.1 -11.3 polyamine ABC transporter substrate-binding protein compare
AO356_13165 -2.1 -10.4 transporter compare
AO356_09905 -2.0 -10.6 ABC transporter for L-Lysine, permease component 1 (from data) conserved
AO356_06005 -2.0 -4.3 zinc metallopeptidase RseP compare
AO356_20830 -2.0 -4.2 phosphoadenosine phosphosulfate reductase compare
AO356_14140 -2.0 -9.7 8-amino-7-oxononanoate synthase compare
AO356_02190 -2.0 -6.7 hypothetical protein compare
AO356_15305 -2.0 -3.4 50S rRNA methyltransferase compare
AO356_03420 -2.0 -7.1 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_06325 -2.0 -1.8 plasmid stabilization protein ParE compare
AO356_06995 -2.0 -5.8 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_04555 -2.0 -7.1 peptidase M48 compare
AO356_17065 -1.9 -2.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_02955 -1.9 -1.8 hypothetical protein compare
AO356_09425 -1.9 -7.4 malate dehydrogenase compare
AO356_13475 -1.9 -5.8 glutathione synthetase compare
AO356_11025 -1.9 -5.6 transcriptional regulator PhoU compare
AO356_10720 -1.9 -7.5 succinate-semialdehyde dehydrogenase compare
AO356_13910 -1.9 -7.8 (Fe-S)-binding protein compare
AO356_28695 -1.9 -1.9 IclR family transcriptional regulator compare
AO356_28025 -1.9 -4.8 aldehyde dehydrogenase compare
AO356_08985 -1.8 -1.1 hypothetical protein compare
AO356_12375 -1.8 -9.2 histidine kinase compare
AO356_09910 -1.8 -8.1 ABC transporter for L-Lysine, permease component 2 (from data) compare
AO356_02250 -1.8 -7.5 pyridine nucleotide-disulfide oxidoreductase compare
AO356_07000 -1.8 -2.9 ABC transporter permease compare
AO356_04560 -1.8 -3.0 serine peptidase compare
AO356_09900 -1.8 -8.5 ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) compare
AO356_22795 -1.7 -3.6 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_01630 -1.7 -5.7 anti-sigma factor compare
AO356_19115 -1.7 -5.6 peptidase P60 compare
AO356_14235 -1.7 -6.7 addiction module toxin RelE compare
AO356_17970 -1.7 -12.0 porin compare
AO356_08510 -1.7 -8.6 aldehyde dehydrogenase conserved
AO356_21835 -1.7 -1.4 glyoxalase compare
AO356_13570 -1.7 -7.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO356_08645 -1.7 -4.6 hypothetical protein compare
AO356_07480 -1.7 -2.9 carbamoyl phosphate synthase large subunit compare
AO356_03350 -1.7 -6.2 glycosyl transferase compare
AO356_17025 -1.7 -4.3 alpha/beta hydrolase compare
AO356_12990 -1.7 -6.4 5-formyltetrahydrofolate cyclo-ligase compare
AO356_05670 -1.7 -2.9 recombinase RecA compare
AO356_02465 -1.6 -2.1 carbonate dehydratase compare
AO356_04335 -1.6 -6.9 hypothetical protein compare
AO356_11340 -1.6 -1.4 NADH-flavin reductase compare
AO356_13155 -1.6 -7.6 spermidine/putrescine ABC transporter substrate-binding protein compare
AO356_24485 -1.6 -2.8 SAM-dependent methyltransferase compare
AO356_08515 -1.6 -8.2 LysR family transcriptional regulator compare
AO356_11585 -1.6 -3.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_17395 -1.6 -4.6 glutamine ABC transporter ATP-binding protein compare
AO356_16745 -1.6 -7.3 dihydrofolate reductase compare
AO356_02335 -1.6 -4.3 hypothetical protein compare
AO356_07050 -1.6 -5.5 glmZ(sRNA)-inactivating NTPase compare
AO356_12140 -1.6 -2.3 type VI secretion protein compare
AO356_15325 -1.6 -2.7 hypothetical protein compare
AO356_28110 -1.5 -6.6 ATPase compare
AO356_22675 -1.5 -1.6 sulfate transporter compare


Specific Phenotypes

For 50 genes in this experiment

For carbon source L-Lysine in Pseudomonas fluorescens FW300-N2C3

For carbon source L-Lysine across organisms