Experiment set2IT072 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS04485 -6.4 -7.6 riboflavin synthase compare
MMJJ_RS00235 -5.9 -21.0 hypothetical protein compare
MMJJ_RS00645 -5.8 -5.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS05535 -5.6 -9.4 hypothetical protein compare
MMJJ_RS03170 -5.5 -9.1 DUF5612 domain-containing protein compare
MMJJ_RS03055 -5.5 -2.3 hypothetical protein compare
MMJJ_RS08870 -5.3 -1.0 2-isopropylmalate synthase compare
MMJJ_RS03920 -5.2 -17.2 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS03800 -5.2 -12.5 aldolase compare
MMJJ_RS03895 -5.2 -2.5 hydrogenase expression/formation protein HypE compare
MMJJ_RS06260 -5.1 -7.0 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS08080 -5.1 -7.0 TIGR00300 family protein compare
MMJJ_RS00580 -5.1 -1.6 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS03620 -5.0 -3.4 DUF2097 domain-containing protein compare
MMJJ_RS07425 -5.0 -11.1 MBL fold metallo-hydrolase compare
MMJJ_RS07360 -5.0 -1.6 TIGR00269 family protein compare
MMJJ_RS06270 -5.0 -3.4 dethiobiotin synthase compare
MMJJ_RS06600 -4.9 -2.0 DUF555 domain-containing protein compare
MMJJ_RS01810 -4.8 -1.6 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS04800 -4.8 -4.7 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS08035 -4.8 -7.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS04200 -4.8 -4.7 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS02045 -4.8 -2.2 molybdenum cofactor guanylyltransferase compare
MMJJ_RS02985 -4.7 -19.4 MBL fold metallo-hydrolase compare
MMJJ_RS03630 -4.7 -13.7 AMP phosphorylase compare
MMJJ_RS03230 -4.7 -2.8 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS07380 -4.7 -5.6 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS02200 -4.7 -6.5 chorismate pyruvate-lyase family protein compare
MMJJ_RS06375 -4.7 -2.6 UbiX family flavin prenyltransferase compare
MMJJ_RS07980 -4.7 -14.6 biotin synthase BioB compare
MMJJ_RS06265 -4.7 -14.8 8-amino-7-oxononanoate synthase compare
MMJJ_RS07720 -4.7 -1.7 UPF0058 family protein compare
MMJJ_RS00570 -4.6 -1.5 ribonuclease P compare
MMJJ_RS05770 -4.6 -1.9 flagellar protein D compare
MMJJ_RS03065 -4.6 -15.5 CBS domain-containing protein compare
MMJJ_RS04475 -4.6 -4.4 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS06860 -4.6 -3.2 hypothetical protein compare
MMJJ_RS09375 -4.5 -1.4 hypothetical protein compare
MMJJ_RS00560 -4.5 -2.5 homoisocitrate dehydrogenase compare
MMJJ_RS09190 -4.5 -1.5 tryptophan synthase subunit beta compare
MMJJ_RS06030 -4.5 -5.1 4Fe-4S binding protein compare
MMJJ_RS08625 -4.5 -3.1 magnesium/cobalt transporter CorA compare
MMJJ_RS08655 -4.5 -13.0 phospholipase D-like domain-containing protein compare
MMJJ_RS06155 -4.5 -3.1 phosphatidylglycerophosphatase A compare
MMJJ_RS01350 -4.5 -4.3 sodium:proton antiporter compare
MMJJ_RS07950 -4.4 -2.2 4Fe-4S binding protein compare
MMJJ_RS05575 -4.4 -2.6 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS08155 -4.4 -2.6 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS05065 -4.4 -3.6 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS00935 -4.4 -14.7 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS07455 -4.3 -5.1 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS04685 -4.3 -6.6 carbamoyltransferase HypF compare
MMJJ_RS04155 -4.3 -3.0 hypothetical protein compare
MMJJ_RS09095 -4.3 -10.3 MMPL family transporter compare
MMJJ_RS06725 -4.3 -11.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS00600 -4.3 -1.9 hydroxymethylbilane synthase compare
MMJJ_RS07160 -4.2 -19.1 M20 family metallo-hydrolase compare
MMJJ_RS00425 -4.2 -3.1 hypothetical protein compare
MMJJ_RS04595 -4.2 -4.1 hypothetical protein compare
MMJJ_RS06750 -4.2 -1.7 homoaconitase large subunit compare
MMJJ_RS07975 -4.2 -8.3 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS06855 -4.2 -1.3 DUF2104 domain-containing protein compare
MMJJ_RS04050 -4.2 -1.3 dihydroneopterin aldolase family protein compare
MMJJ_RS01750 -4.1 -1.9 ferrous iron transport protein A compare
MMJJ_RS00205 -4.1 -4.9 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS06510 -4.1 -1.9 LL-diaminopimelate aminotransferase compare
MMJJ_RS04995 -4.1 -4.0 Tfx family DNA-binding protein compare
MMJJ_RS00450 -4.1 -1.5 DUF126 domain-containing protein compare
MMJJ_RS06695 -4.1 -2.0 amidohydrolase compare
MMJJ_RS00995 -4.1 -6.6 TetR/AcrR family transcriptional regulator compare
MMJJ_RS07675 -4.0 -16.4 ADP-specific phosphofructokinase compare
MMJJ_RS02920 -4.0 -1.5 30S ribosomal protein S27ae compare
MMJJ_RS08020 -4.0 -11.5 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06805 -4.0 -1.8 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS01935 -4.0 -3.2 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS04730 -3.9 -1.9 tyrosine decarboxylase MfnA compare
MMJJ_RS06220 -3.9 -2.7 polyamine aminopropyltransferase compare
MMJJ_RS06040 -3.9 -2.2 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS07410 -3.9 -2.3 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS03095 -3.8 -1.7 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS05590 -3.8 -1.4 homoserine dehydrogenase compare
MMJJ_RS00270 -3.8 -2.0 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS03200 -3.8 -1.6 uroporphyrinogen-III synthase compare
MMJJ_RS04680 -3.8 -11.5 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS03155 -3.8 -12.8 hypothetical protein compare
MMJJ_RS03310 -3.8 -2.2 hypothetical protein compare
MMJJ_RS03110 -3.8 -3.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS08535 -3.8 -2.8 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS06625 -3.8 -1.4 pyruvate synthase subunit PorB compare
MMJJ_RS01600 -3.8 -1.8 radical SAM protein compare
MMJJ_RS08660 -3.7 -2.1 acetylornithine transaminase compare
MMJJ_RS07350 -3.7 -2.7 4Fe-4S binding protein compare
MMJJ_RS03615 -3.7 -1.8 cobalt-precorrin-8 methylmutase compare
MMJJ_RS04650 -3.7 -4.4 nitrogenase iron protein compare
MMJJ_RS01880 -3.7 -2.5 RlmE family RNA methyltransferase compare
MMJJ_RS07470 -3.7 -1.4 50S ribosome-binding GTPase compare
MMJJ_RS06010 -3.7 -5.4 hypothetical protein compare
MMJJ_RS03115 -3.7 -6.3 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS08850 -3.7 -1.7 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS08405 -3.7 -12.6 nickel-dependent hydrogenase large subunit compare
MMJJ_RS01870 -3.7 -1.5 methanogenesis marker 15 protein compare
MMJJ_RS03225 -3.6 -1.6 4Fe-4S binding protein compare
MMJJ_RS05650 -3.6 -1.9 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS07245 -3.6 -4.9 amidohydrolase family protein compare
MMJJ_RS06015 -3.6 -9.9 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS05070 -3.6 -1.5 DNA primase catalytic subunit PriS compare
MMJJ_RS07415 -3.6 -1.6 polyprenyl diphosphate synthase compare
MMJJ_RS07190 -3.6 -2.4 RtcB family protein compare
MMJJ_RS06255 -3.5 -5.9 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS01755 -3.5 -1.7 ferrous iron transport protein B compare
MMJJ_RS04145 -3.5 -9.2 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS03580 -3.5 -1.8 TIGR00303 family protein compare
MMJJ_RS03150 -3.5 -6.6 2-phospho-L-lactate transferase compare
MMJJ_RS06180 -3.5 -1.8 tryptophan--tRNA ligase compare
MMJJ_RS07430 -3.5 -3.3 ribonuclease VapC compare
MMJJ_RS03760 -3.4 -2.7 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS03125 -3.4 -3.4 GMC oxidoreductase compare
MMJJ_RS07000 -3.4 -1.3 TrkH family potassium uptake protein compare
MMJJ_RS08865 -3.4 -10.2 class IV adenylate cyclase compare
MMJJ_RS05950 -3.4 -1.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03785 -3.4 -1.7 hypothetical protein compare
MMJJ_RS06175 -3.4 -1.4 DUF1743 domain-containing protein compare
MMJJ_RS00125 -3.4 -1.7 KEOPS complex subunit Cgi121 compare
MMJJ_RS03005 -3.4 -2.7 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS03840 -3.4 -2.3 DHH family phosphoesterase compare
MMJJ_RS05995 -3.4 -1.4 ATP-binding cassette domain-containing protein compare
MMJJ_RS04975 -3.4 -1.4 glycosyltransferase family 4 protein compare
MMJJ_RS07375 -3.4 -7.5 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS06395 -3.4 -11.1 sugar phosphate isomerase/epimerase compare
MMJJ_RS05380 -3.4 -0.9 hypothetical protein compare
MMJJ_RS06225 -3.3 -1.4 adenosylmethionine decarboxylase compare
MMJJ_RS04700 -3.3 -6.3 deoxyhypusine synthase compare
MMJJ_RS03540 -3.3 -6.0 TIGR00289 family protein compare
MMJJ_RS05810 -3.3 -3.9 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS08095 -3.3 -3.0 cobyric acid synthase CobQ compare
MMJJ_RS00215 -3.3 -1.5 CCA tRNA nucleotidyltransferase compare
MMJJ_RS04790 -3.3 -1.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS05360 -3.3 -5.6 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS03865 -3.3 -1.0 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS05415 -3.3 -1.4 hypothetical protein compare
MMJJ_RS02855 -3.3 -9.2 DEAD/DEAH box helicase compare
MMJJ_RS02935 -3.3 -2.8 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS08010 -3.3 -8.2 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS08795 -3.2 -1.6 phosphoglucosamine mutase compare
MMJJ_RS05620 -3.2 -2.2 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS03670 -3.2 -3.6 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS04520 -3.2 -5.3 coenzyme F430 synthase compare
MMJJ_RS06715 -3.2 -8.6 lactaldehyde dehydrogenase compare
MMJJ_RS05610 -3.2 -3.1 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS04980 -3.2 -4.4 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS04675 -3.2 -6.0 thiamine pyrophosphate-binding protein compare
MMJJ_RS06630 -3.2 -12.6 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS03190 -3.2 -2.3 phosphopyruvate hydratase compare
MMJJ_RS06215 -3.2 -3.7 agmatinase compare
MMJJ_RS00210 -3.2 -1.3 DUF530 family protein compare
MMJJ_RS06930 -3.2 -1.9 type II methionyl aminopeptidase compare
MMJJ_RS02035 -3.2 -6.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS00370 -3.1 -1.6 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS08330 -3.1 -2.3 SufD family Fe-S cluster assembly protein compare
MMJJ_RS00275 -3.1 -1.8 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06760 -3.1 -3.0 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS05655 -3.1 -7.7 HisA/HisF family protein compare
MMJJ_RS03650 -3.1 -7.0 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS08855 -3.1 -4.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS07725 -3.1 -6.4 DNA primase DnaG compare
MMJJ_RS04970 -3.1 -1.5 DUF655 domain-containing protein compare
MMJJ_RS06025 -3.1 -15.3 4Fe-4S binding protein compare
MMJJ_RS08250 -3.1 -5.4 hydrogenase maturation peptidase HycI compare
MMJJ_RS08320 -3.1 -1.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS07705 -3.0 -1.7 GTP-binding protein EngB compare
MMJJ_RS05720 -3.0 -2.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS06240 -3.0 -1.9 dihydropteroate synthase-like protein compare
MMJJ_RS08925 -3.0 -12.7 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS08840 -3.0 -3.7 calcium/sodium antiporter compare
MMJJ_RS01360 -3.0 -1.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS09055 -3.0 -8.6 NFACT family protein compare
MMJJ_RS04150 -3.0 -2.4 DUF5379 domain-containing protein compare
MMJJ_RS08000 -3.0 -10.7 HesA/MoeB/ThiF family protein compare
MMJJ_RS05445 -2.9 -1.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS06840 -2.9 -2.7 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06940 -2.9 -8.7 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS07485 -2.9 -7.8 DedA family protein compare
MMJJ_RS09175 -2.9 -0.8 anthranilate synthase component I compare
MMJJ_RS01200 -2.9 -2.2 PRC-barrel domain-containing protein compare
MMJJ_RS05490 -2.9 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS03820 -2.9 -1.9 hydrogenase formation protein HypD compare
MMJJ_RS04010 -2.9 -5.9 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS06250 -2.9 -1.4 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS05450 -2.9 -14.4 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS06035 -2.9 -6.7 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS01345 -2.9 -5.4 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS06020 -2.9 -4.9 hypothetical protein compare
MMJJ_RS09135 -2.9 -8.6 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS06490 -2.8 -1.9 methanogenesis marker 2 protein compare
MMJJ_RS06700 -2.8 -4.7 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS07155 -2.8 -9.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS03965 -2.8 -1.7 DNA-directed RNA polymerase subunit L compare
MMJJ_RS02090 -2.8 -4.7 tyramine--L-glutamate ligase compare
MMJJ_RS06005 -2.7 -7.6 energy conserving hydrogenase EhbF compare
MMJJ_RS07945 -2.7 -2.4 4Fe-4S binding protein compare


Specific Phenotypes

For 3 genes in this experiment

For nutrient t2 Sodium acetate in Methanococcus maripaludis JJ

For nutrient t2 Sodium acetate across organisms