Experiment set2IT072 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Histidine carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -7.0 -4.8 5,10-methylenetetrahydrofolate reductase compare
RR42_RS18305 -6.7 -4.6 anthranilate phosphoribosyltransferase compare
RR42_RS14390 -6.1 -4.2 3-isopropylmalate dehydratase compare
RR42_RS14365 -5.8 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS19005 -5.8 -5.6 3-dehydroquinate synthase compare
RR42_RS06485 -5.7 -6.8 chorismate synthase compare
RR42_RS14400 -5.5 -5.3 isopropylmalate isomerase compare
RR42_RS17390 -5.3 -8.0 ATP-dependent DNA helicase RecG compare
RR42_RS18295 -5.0 -12.1 anthranilate synthase component I compare
RR42_RS14320 -5.0 -5.9 O-succinylhomoserine sulfhydrylase compare
RR42_RS30655 -5.0 -5.9 LysR family transcriptional regulator compare
RR42_RS14385 -4.9 -6.6 3-isopropylmalate dehydrogenase compare
RR42_RS04475 -4.6 -8.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS01160 -4.4 -9.8 homoserine O-acetyltransferase compare
RR42_RS05860 -4.2 -5.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS16250 -4.2 -8.8 sulfate adenylyltransferase compare
RR42_RS03080 -4.0 -4.3 recombinase RecA compare
RR42_RS16255 -3.9 -9.0 sulfate adenylyltransferase compare
RR42_RS16280 -3.8 -9.9 transcriptional regulator compare
RR42_RS16265 -3.6 -6.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS18300 -3.6 -7.1 anthranilate synthase subunit II compare
RR42_RS02705 -3.5 -3.0 Holliday junction DNA helicase RuvA compare
RR42_RS17645 -3.5 -9.9 shikimate dehydrogenase compare
RR42_RS01845 -3.3 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS16270 -3.3 -11.7 sulfite reductase compare
RR42_RS30660 -3.2 -8.6 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS18310 -3.2 -2.7 indole-3-glycerol-phosphate synthase compare
RR42_RS19010 -3.1 -7.0 shikimate kinase compare
RR42_RS16905 -3.1 -6.2 Imidazolonepropionase (EC 3.5.2.7) (from data) conserved
RR42_RS04460 -3.1 -5.2 chorismate mutase compare
RR42_RS04470 -2.9 -6.2 prephenate dehydrogenase compare
RR42_RS01290 -2.9 -6.4 thiamine biosynthesis protein ThiC compare
RR42_RS14360 -2.9 -1.6 tryptophan synthase subunit alpha compare
RR42_RS07325 -2.8 -7.6 exodeoxyribonuclease III compare
RR42_RS05990 -2.7 -7.7 aromatic amino acid aminotransferase compare
RR42_RS06630 -2.7 -2.5 integration host factor subunit alpha compare
RR42_RS21220 -2.7 -3.1 iron transporter FeoB compare
RR42_RS04735 -2.6 -1.9 hypothetical protein compare
RR42_RS13800 -2.6 -5.7 formyltetrahydrofolate deformylase compare
RR42_RS16245 -2.6 -5.5 uroporphyrin-III methyltransferase compare
RR42_RS16275 -2.5 -4.6 membrane protein compare
RR42_RS15050 -2.5 -8.7 DNA polymerase I compare
RR42_RS01795 -2.5 -15.0 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS12590 -2.4 -1.4 50S ribosomal protein L9 compare
RR42_RS02085 -2.4 -6.6 RNA polymerase subunit sigma-54 compare
RR42_RS16895 -2.4 -10.1 N-formylglutamate deformylase (EC 3.5.1.68) (from data) conserved
RR42_RS33355 -2.3 -3.9 membrane protein compare
RR42_RS04535 -2.2 -5.7 cysteine synthase compare
RR42_RS26900 -2.2 -2.3 enoyl-CoA hydratase compare
RR42_RS02500 -2.2 -2.6 TetR family transcriptional regulator compare
RR42_RS33260 -2.1 -7.1 multidrug MFS transporter compare
RR42_RS01705 -2.0 -3.4 Fis family transcriptional regulator compare
RR42_RS17720 -1.9 -2.9 sugar kinase compare
RR42_RS14030 -1.9 -5.7 DNA recombination protein RecO conserved
RR42_RS08575 -1.9 -1.5 tail protein compare
RR42_RS04700 -1.8 -1.7 ribonuclease G compare
RR42_RS02380 -1.8 -7.0 FAD-linked oxidase compare
RR42_RS33250 -1.8 -5.9 tyrosine protein kinase compare
RR42_RS22230 -1.7 -2.2 hypothetical protein compare
RR42_RS11655 -1.7 -1.8 heat-shock protein Hsp20 compare
RR42_RS16240 -1.7 -1.7 cobalamin biosynthesis protein CbiX compare
RR42_RS11770 -1.7 -1.7 cyclase compare
RR42_RS07365 -1.6 -3.0 pyruvate dehydrogenase compare
RR42_RS12050 -1.6 -5.2 DNA polymerase compare
RR42_RS08945 -1.6 -1.7 hypothetical protein compare
RR42_RS07605 -1.6 -5.4 poly-beta-hydroxybutyrate polymerase compare
RR42_RS16260 -1.6 -1.7 phosphoadenosine phosphosulfate reductase compare
RR42_RS14055 -1.6 -1.9 elongation factor 4 compare
RR42_RS13620 -1.6 -1.2 ferredoxin compare
RR42_RS16920 -1.6 -3.5 histidine ammonia-lyase compare
RR42_RS33245 -1.6 -7.7 mannose-1-phosphate guanyltransferase compare
RR42_RS26580 -1.5 -1.8 hypothetical protein compare
RR42_RS07870 -1.5 -4.9 alkyl hydroperoxide reductase compare
RR42_RS18020 -1.5 -3.3 ornithine acetyltransferase compare
RR42_RS11790 -1.5 -6.4 phosphoenolpyruvate synthase compare
RR42_RS14355 -1.5 -5.3 DNA methylase N-4 compare
RR42_RS21435 -1.5 -3.1 hypothetical protein compare
RR42_RS20205 -1.5 -2.8 chromosome partitioning protein compare
RR42_RS18850 -1.4 -2.6 preprotein translocase subunit TatC compare
RR42_RS24820 -1.4 -3.1 hypothetical protein compare
RR42_RS05665 -1.3 -1.3 urease accessory protein UreJ compare
RR42_RS21690 -1.3 -1.0 acetyltransferase compare
RR42_RS01780 -1.3 -5.1 glutathione synthetase compare
RR42_RS33255 -1.3 -1.8 protein-tyrosine phosphatase compare
RR42_RS33575 -1.3 -2.5 hypothetical protein compare
RR42_RS31530 -1.3 -2.9 histidine kinase compare
RR42_RS26200 -1.3 -1.9 hypothetical protein compare
RR42_RS06240 -1.3 -1.6 tryptophan--tRNA ligase compare
RR42_RS29335 -1.3 -1.6 integrase compare
RR42_RS02785 -1.3 -1.9 dimethyladenosine transferase compare
RR42_RS29280 -1.3 -1.2 hypothetical protein compare
RR42_RS31910 -1.2 -1.7 acyl-CoA dehydrogenase compare
RR42_RS05085 -1.2 -2.5 2-aminomuconate deaminase compare
RR42_RS13270 -1.2 -5.8 recombination protein RecR compare
RR42_RS03095 -1.2 -1.5 succinyl-CoA synthetase subunit beta compare
RR42_RS13180 -1.2 -6.1 3'-5' exonuclease compare
RR42_RS15090 -1.2 -3.1 DNA helicase compare
RR42_RS25200 -1.2 -3.5 TetR family transcriptional regulator compare
RR42_RS18140 -1.2 -1.3 MarR family transcriptional regulator compare
RR42_RS01695 -1.2 -5.7 C4-dicarboxylate transporter compare
RR42_RS13935 -1.2 -1.6 hemin transporter compare
RR42_RS04895 -1.2 -7.6 serine/threonine protein phosphatase compare
RR42_RS33240 -1.2 -7.2 GDP-L-fucose synthase compare
RR42_RS15200 -1.1 -2.3 phenazine biosynthesis protein PhzC/PhzF compare
RR42_RS16915 -1.1 -4.8 urocanate hydratase compare
RR42_RS07630 -1.1 -2.0 methyltransferase type 12 compare
RR42_RS19635 -1.1 -1.5 hypothetical protein compare
RR42_RS12305 -1.1 -1.1 hypothetical protein compare
RR42_RS03345 -1.1 -3.3 recombinase XerD compare
RR42_RS13880 -1.1 -7.6 AMP-dependent synthetase compare
RR42_RS10465 -1.1 -1.4 hypothetical protein compare
RR42_RS35450 -1.1 -2.0 hypothetical protein compare
RR42_RS00715 -1.1 -2.4 ferritin compare
RR42_RS14395 -1.1 -1.3 entericidin compare
RR42_RS08175 -1.1 -1.0 hypothetical protein compare
RR42_RS20570 -1.1 -2.0 biopolymer transporter ExbD compare
RR42_RS18855 -1.1 -3.2 preprotein translocase compare
RR42_RS17060 -1.1 -8.3 histidine kinase compare
RR42_RS05075 -1.1 -2.2 aminocarboxymuconate-semialdehyde decarboxylase compare
RR42_RS24750 -1.1 -2.2 LysR family transcriptional regulator compare
RR42_RS32460 -1.1 -2.6 LysR family transcriptional regulator compare
RR42_RS27710 -1.1 -2.3 LysR family transcriptional regulator compare
RR42_RS01860 -1.1 -3.0 amidophosphoribosyltransferase compare
RR42_RS00600 -1.0 -1.7 DeoR family transcriptional regulator compare
RR42_RS08170 -1.0 -3.2 hypothetical protein compare
RR42_RS05165 -1.0 -1.6 GntR family transcriptional regulator compare
RR42_RS24535 -1.0 -1.1 tRNA-Asn compare
RR42_RS00615 -1.0 -5.0 recombinase XerC compare
RR42_RS24605 -1.0 -6.3 TetR family transcriptional regulator compare
RR42_RS15015 -1.0 -1.0 exodeoxyribonuclease VII small subunit compare
RR42_RS33235 -1.0 -5.0 GDP-mannose 4,6-dehydratase compare
RR42_RS05485 -1.0 -2.0 polynucleotide phosphorylase/polyadenylase compare
RR42_RS02730 -1.0 -3.7 tRNA-dihydrouridine synthase B compare
RR42_RS01785 -1.0 -2.2 PTS fructose transporter subunit IIA compare
RR42_RS15055 -1.0 -3.4 hypothetical protein compare
RR42_RS21830 -1.0 -3.7 transcriptional regulator compare
RR42_RS12240 -1.0 -1.1 hypothetical protein compare
RR42_RS28620 -1.0 -2.0 ABC transporter compare
RR42_RS21595 -1.0 -2.5 IclR family transcriptional regulator compare
RR42_RS28885 -1.0 -4.0 membrane protein compare
RR42_RS08000 -1.0 -1.1 hypothetical protein compare
RR42_RS07555 -1.0 -1.5 potassium transporter Kup compare
RR42_RS19085 -1.0 -1.4 cytochrome C biogenesis protein ResB compare
RR42_RS05985 -1.0 -6.2 esterase compare
RR42_RS23635 -1.0 -2.3 flagellar assembly protein FliT compare
RR42_RS01775 -1.0 -4.1 glutamate--cysteine ligase compare
RR42_RS33210 -1.0 -2.4 teichoic acid biosynthesis protein compare
RR42_RS06875 -1.0 -1.9 hypothetical protein compare
RR42_RS17555 -1.0 -1.3 hypothetical protein compare
RR42_RS33455 -1.0 -3.0 endoribonuclease L-PSP compare
RR42_RS08995 -0.9 -3.1 hypothetical protein compare
RR42_RS28850 -0.9 -2.5 transcriptional regulator compare
RR42_RS20195 -0.9 -1.0 ATPase F0F1 compare
RR42_RS20485 -0.9 -2.9 thiol-disulfide isomerase compare
RR42_RS26905 -0.9 -3.7 methylcrotonoyl-CoA carboxylase compare
RR42_RS25645 -0.9 -1.9 hypothetical protein compare
RR42_RS00410 -0.9 -3.2 transcriptional regulator compare
RR42_RS04850 -0.9 -1.1 hypothetical protein compare
RR42_RS02045 -0.9 -6.6 GTPase compare
RR42_RS00790 -0.9 -6.2 chemotaxis protein CheY compare
RR42_RS10310 -0.9 -1.4 NADPH:quinone reductase compare
RR42_RS12185 -0.9 -1.1 LysR family transcriptional regulator compare
RR42_RS12550 -0.9 -2.1 hypothetical protein compare
RR42_RS01905 -0.9 -2.1 cytochrome C oxidase subunit II compare
RR42_RS15895 -0.9 -3.6 uroporphyrinogen III methyltransferase compare
RR42_RS19825 -0.9 -3.0 LysR family transcriptional regulator compare
RR42_RS37455 -0.9 -1.5 hypothetical protein compare
RR42_RS25785 -0.9 -2.3 TetR family transcriptional regulator compare
RR42_RS18385 -0.9 -1.8 hypothetical protein compare
RR42_RS13065 -0.9 -5.2 ribonuclease R compare
RR42_RS01380 -0.9 -1.0 membrane protein compare
RR42_RS30545 -0.9 -2.2 cobalt-precorrin-6Y C(5)-methyltransferase compare
RR42_RS24790 -0.9 -1.1 LysR family transcriptional regulator compare
RR42_RS34650 -0.8 -3.6 LacI family transcriptional regulator compare
RR42_RS17885 -0.8 -2.4 ABC transporter permease compare
RR42_RS01820 -0.8 -3.7 peptidase S41 compare
RR42_RS29785 -0.8 -1.6 hypothetical protein compare
RR42_RS17635 -0.8 -1.9 magnesium transporter CorA compare
RR42_RS27550 -0.8 -0.8 hypothetical protein compare
RR42_RS17310 -0.8 -2.6 D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) (from data) compare
RR42_RS33195 -0.8 -5.0 UDP-sugar lipid carrier transferase compare
RR42_RS35110 -0.8 -1.4 hypothetical protein compare
RR42_RS00860 -0.8 -2.3 MerR family transcriptional regulator compare
RR42_RS14965 -0.8 -2.8 hypothetical protein compare
RR42_RS34395 -0.8 -1.3 hypothetical protein compare
RR42_RS00250 -0.8 -3.5 GntR family transcriptional regulator compare
RR42_RS20350 -0.8 -1.6 hypothetical protein compare
RR42_RS18420 -0.8 -3.5 hypothetical protein compare
RR42_RS16935 -0.8 -3.0 ABC transporter permease compare
RR42_RS06095 -0.8 -2.1 hypothetical protein compare
RR42_RS20305 -0.8 -4.9 metal ABC transporter ATPase compare
RR42_RS18485 -0.8 -0.9 glutaredoxin compare
RR42_RS06750 -0.8 -3.1 hypothetical protein compare
RR42_RS31820 -0.8 -1.9 short-chain dehydrogenase compare
RR42_RS34155 -0.8 -2.8 hypothetical protein compare
RR42_RS21825 -0.8 -1.7 hypothetical protein compare
RR42_RS06890 -0.7 -0.8 hypothetical protein compare
RR42_RS25755 -0.7 -1.8 IclR family transcriptional regulator compare
RR42_RS19410 -0.7 -3.9 GntR family transcriptional regulator compare
RR42_RS18815 -0.7 -4.1 cytochrome C compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Histidine in Cupriavidus basilensis FW507-4G11

For carbon source L-Histidine across organisms