Experiment set2IT072 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Histidine carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS11460 +3.6 14.5 pyrroloquinoline quinone biosynthesis protein PqqB conserved
RR42_RS11465 +3.5 12.9 pyrroloquinoline quinone biosynthesis protein PqqC compare
RR42_RS14635 +3.4 19.1 proline-specific permease conserved
RR42_RS21820 +2.8 10.2 GntR family transcriptional regulator compare
RR42_RS14640 +2.5 7.6 histidine ammonia-lyase conserved
RR42_RS21470 +1.8 2.2 hypothetical protein compare
RR42_RS12390 +1.7 3.9 transporter compare
RR42_RS06250 +1.7 4.7 dihydrodipicolinate synthase compare
RR42_RS11440 +1.6 3.6 cytochrome Cbb3 compare
RR42_RS14645 +1.5 4.2 urocanate hydratase compare
RR42_RS07330 +1.5 7.0 histidine utilization repressor compare
RR42_RS34275 +1.4 1.6 virulence protein compare
RR42_RS28005 +1.4 2.2 phosphonate/organophosphate ester transporter subunit compare
RR42_RS20370 +1.4 2.4 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS08185 +1.4 1.9 hypothetical protein compare
RR42_RS29610 +1.3 1.9 cytochrome C2 compare
RR42_RS16360 +1.3 2.9 transposase compare
RR42_RS26080 +1.2 1.5 hypothetical protein compare
RR42_RS23140 +1.2 1.4 peptidylprolyl isomerase compare
RR42_RS33495 +1.2 10.5 L-phenylalanine:H+ symporter AroP (from data) compare
RR42_RS07450 +1.2 5.7 ABC transporter permease compare
RR42_RS02810 +1.2 3.4 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS15380 +1.2 4.0 kynurenine formamidase compare
RR42_RS33505 +1.2 5.5 AsnC family transcriptional regulator compare
RR42_RS07455 +1.2 7.1 ABC transporter substrate-binding protein compare
RR42_RS23125 +1.1 2.2 hypothetical protein compare
RR42_RS33500 +1.1 7.5 4-hydroxyphenylpyruvate dioxygenase compare
RR42_RS26085 +1.0 2.4 acetoacetyl-CoA reductase compare
RR42_RS04810 +1.0 1.9 glycine/betaine ABC transporter permease compare
RR42_RS20365 +1.0 7.1 phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
RR42_RS19885 +1.0 1.9 aminoglycoside transporter compare
RR42_RS12880 +1.0 2.6 membrane protein compare
RR42_RS08260 +1.0 1.6 hypothetical protein compare
RR42_RS05750 +1.0 1.7 fructose 2,6-bisphosphatase compare
RR42_RS09300 +1.0 2.1 aromatic ring-opening dioxygenase LigB compare
RR42_RS29315 +0.9 6.3 AcrR family transcriptional regulator compare
RR42_RS33940 +0.9 3.4 naphthalene 1,2-dioxygenase compare
RR42_RS12925 +0.9 2.6 ATPase compare
RR42_RS23355 +0.9 2.2 flagellar biosynthetic protein FliQ compare
RR42_RS03910 +0.9 2.0 (2Fe-2S)-binding protein compare
RR42_RS03020 +0.9 1.4 MarR family transcriptional regulator compare
RR42_RS17805 +0.9 1.1 hypothetical protein compare
RR42_RS07200 +0.9 1.6 hypothetical protein compare
RR42_RS07140 +0.9 1.7 hypothetical protein compare
RR42_RS08220 +0.9 1.0 hypothetical protein compare
RR42_RS04420 +0.9 4.4 required for efflux of an amino acid polymer (from data) compare
RR42_RS06245 +0.9 1.1 SAM-dependent methyltransferase compare
RR42_RS09835 +0.9 2.3 chemotaxis protein compare
RR42_RS16460 +0.9 1.6 cupin compare
RR42_RS36795 +0.8 2.7 fumarate hydratase compare
RR42_RS03370 +0.8 2.9 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS29040 +0.8 2.2 histidyl-tRNA synthetase compare
RR42_RS27570 +0.8 1.9 murein hydrolase effector protein compare
RR42_RS08470 +0.8 1.3 hypothetical protein compare
RR42_RS26540 +0.8 1.2 3-phosphoglycerate dehydrogenase compare
RR42_RS00725 +0.8 3.4 hypothetical protein compare
RR42_RS03525 +0.8 1.1 type VI secretion system effector compare
RR42_RS16565 +0.8 2.5 hypothetical protein compare
RR42_RS05920 +0.8 3.1 HrcA family transcriptional regulator compare
RR42_RS08025 +0.8 1.1 phage Gp37Gp68 compare
RR42_RS26875 +0.8 1.6 LysR family transcriptional regulator compare
RR42_RS09590 +0.8 1.7 hypothetical protein compare
RR42_RS30735 +0.8 1.6 tRNA-Met compare
RR42_RS01330 +0.8 2.8 Fis family transcriptional regulator compare
RR42_RS16925 +0.7 2.0 histidine utilization repressor compare
RR42_RS35220 +0.7 1.2 peptide ABC transporter ATP-binding protein compare
RR42_RS17355 +0.7 0.7 hypothetical protein compare
RR42_RS05755 +0.7 1.5 enoyl-CoA hydratase compare
RR42_RS17495 +0.7 3.1 hypothetical protein compare
RR42_RS26485 +0.7 2.3 2,5-dihydroxypyridine 5,6-dioxygenase compare
RR42_RS18990 +0.7 6.3 glutamate synthase compare
RR42_RS12430 +0.7 1.3 LysR family transcriptional regulator compare
RR42_RS37045 +0.7 1.4 thiamine biosynthesis protein ApbE compare
RR42_RS10490 +0.7 2.2 DNA-binding protein compare
RR42_RS22680 +0.7 1.6 enoyl-CoA hydratase compare
RR42_RS01360 +0.7 3.5 phenylacetic acid degradation protein compare
RR42_RS07150 +0.7 0.9 hypothetical protein compare
RR42_RS31750 +0.7 1.8 IclR family transcriptional regulator compare
RR42_RS21850 +0.7 1.5 3-oxoadipate enol-lactonase compare
RR42_RS20055 +0.7 5.5 ATP-dependent DNA helicase Rep compare
RR42_RS23305 +0.7 0.8 hypothetical protein compare
RR42_RS14425 +0.7 4.2 leucine ABC transporter substrate-binding protein compare
RR42_RS26935 +0.6 2.6 farnesyl-diphosphate farnesyltransferase compare
RR42_RS08770 +0.6 0.7 2-nitropropane dioxygenase compare
RR42_RS04055 +0.6 1.9 hypothetical protein compare
RR42_RS23230 +0.6 1.1 glycerate kinase compare
RR42_RS19760 +0.6 2.6 hypothetical protein compare
RR42_RS09495 +0.6 1.6 LacI family transcriptional regulator compare
RR42_RS21175 +0.6 2.2 transporter compare
RR42_RS02385 +0.6 1.6 hydrolase compare
RR42_RS03745 +0.6 3.3 LysR family transcriptional regulator compare
RR42_RS34520 +0.6 0.8 transposase compare
RR42_RS14415 +0.6 4.1 leucine/isoleucine/valine transporter permease subunit compare
RR42_RS23955 +0.6 1.6 hypothetical protein compare
RR42_RS00655 +0.6 1.1 membrane protein compare
RR42_RS01980 +0.6 5.1 peptidase M16 compare
RR42_RS03695 +0.6 1.7 hypothetical protein compare
RR42_RS31080 +0.6 1.7 hypothetical protein compare
RR42_RS35740 +0.6 1.6 flagellar biosynthesis protein FlgN compare
RR42_RS23080 +0.6 2.2 LysR family transcriptional regulator compare
RR42_RS23595 +0.6 1.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS31690 +0.6 2.8 4-oxalocrotonate tautomerase compare
RR42_RS09820 +0.6 1.7 hypothetical protein compare
RR42_RS01610 +0.6 2.8 3-hydroxybutyryl-CoA dehydrogenase compare
RR42_RS17375 +0.6 1.0 hypothetical protein compare
RR42_RS04380 +0.6 2.4 LysR family transcriptional regulator compare
RR42_RS06740 +0.6 1.9 hypothetical protein compare
RR42_RS30965 +0.6 1.4 hypothetical protein compare
RR42_RS06910 +0.6 3.1 hypothetical protein compare
RR42_RS26735 +0.6 2.7 hypothetical protein compare
RR42_RS32945 +0.6 3.1 hypothetical protein compare
RR42_RS30250 +0.6 2.1 peptide ABC transporter compare
RR42_RS14405 +0.6 1.2 leucine/isoleucine/valine transporter ATP-binding subunit compare
RR42_RS30410 +0.6 1.4 hypothetical protein compare
RR42_RS31390 +0.6 3.5 2-dehydropantoate 2-reductase compare
RR42_RS01985 +0.6 4.1 zinc protease compare
RR42_RS09015 +0.6 1.8 trigger factor compare
RR42_RS04410 +0.6 3.8 cyanophycin synthetase compare
RR42_RS21075 +0.6 0.8 phosphoribosyltransferase compare
RR42_RS08715 +0.6 1.9 LysR family transcriptional regulator compare
RR42_RS27120 +0.6 0.8 amino acid ABC transporter permease compare
RR42_RS04890 +0.6 1.3 ribonuclease PH compare
RR42_RS23915 +0.6 1.6 hypothetical protein compare
RR42_RS03680 +0.6 1.8 hypothetical protein compare
RR42_RS34570 +0.5 1.0 hypothetical protein compare
RR42_RS08030 +0.5 0.8 hypothetical protein compare
RR42_RS03625 +0.5 1.9 hypothetical protein compare
RR42_RS11435 +0.5 1.9 ABC transporter permease compare
RR42_RS01435 +0.5 1.5 short-chain dehydrogenase compare
RR42_RS11680 +0.5 1.6 hypothetical protein compare
RR42_RS09290 +0.5 0.9 hypothetical protein compare
RR42_RS12520 +0.5 1.7 molybdenum cofactor biosynthesis protein MoaE compare
RR42_RS21380 +0.5 1.0 cupin compare
RR42_RS33485 +0.5 1.5 Fe-S oxidoreductase compare
RR42_RS11580 +0.5 1.3 hypothetical protein compare
RR42_RS28400 +0.5 0.6 CoA-transferase compare
RR42_RS23515 +0.5 2.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS19830 +0.5 1.0 LysR family transcriptional regulator compare
RR42_RS24945 +0.5 2.4 hypothetical protein compare
RR42_RS14235 +0.5 0.8 hypothetical protein compare
RR42_RS01510 +0.5 2.3 N-acetylglutamate synthase compare
RR42_RS28395 +0.5 2.0 DNA-binding protein compare
RR42_RS10835 +0.5 2.3 hypothetical protein compare
RR42_RS27160 +0.5 1.3 acetyl-CoA acetyltransferase compare
RR42_RS08245 +0.5 1.3 hypothetical protein compare
RR42_RS16175 +0.5 0.9 enoyl-CoA hydratase compare
RR42_RS13705 +0.5 2.6 alpha/beta hydrolase compare
RR42_RS08180 +0.5 0.8 hypothetical protein compare
RR42_RS03725 +0.5 2.0 magnesium transporter CorA compare
RR42_RS25100 +0.5 2.0 dehydratase compare
RR42_RS02065 +0.5 0.7 phosphate starvation-inducible protein PsiF compare
RR42_RS06785 +0.5 1.5 hypothetical protein compare
RR42_RS35900 +0.5 2.8 hypothetical protein compare
RR42_RS01600 +0.5 2.7 methylmalonyl-CoA mutase compare
RR42_RS17425 +0.5 3.1 chemotaxis protein CheY compare
RR42_RS32300 +0.5 1.8 nickel transporter compare
RR42_RS13685 +0.5 1.2 cupin compare
RR42_RS04405 +0.5 2.9 cyanophycin synthetase compare
RR42_RS03715 +0.5 1.6 inositol monophosphatase compare
RR42_RS15120 +0.5 0.9 4-oxalocrotonate tautomerase compare
RR42_RS01565 +0.5 2.0 hypothetical protein compare
RR42_RS07930 +0.5 2.2 peptide ABC transporter ATP-binding protein compare
RR42_RS01730 +0.5 2.5 membrane protein compare
RR42_RS10290 +0.5 1.6 hypothetical protein compare
RR42_RS07800 +0.5 1.5 IclR family transcriptional regulator compare
RR42_RS18435 +0.5 3.7 DNA-binding protein compare
RR42_RS03385 +0.5 2.2 sugar kinase compare
RR42_RS15730 +0.5 3.1 sugar transferase compare
RR42_RS36600 +0.5 2.4 CoA-transferase compare
RR42_RS31790 +0.5 0.7 nitrite reductase compare
RR42_RS02545 +0.5 1.2 nitrate ABC transporter ATP-binding protein compare
RR42_RS05905 +0.5 1.2 hypothetical protein compare
RR42_RS13625 +0.5 1.4 4-hydroxybenzoyl-CoA reductase compare
RR42_RS25120 +0.5 1.5 IclR family transcriptional regulator compare
RR42_RS15745 +0.5 2.6 group1 glycosyl transferase compare
RR42_RS32815 +0.5 1.6 hypothetical protein compare
RR42_RS06445 +0.5 1.1 NAD(P)H-quinone oxidoreductase compare
RR42_RS13755 +0.5 1.7 hypothetical protein compare
RR42_RS17595 +0.5 1.3 hypothetical protein compare
RR42_RS28085 +0.5 1.0 alkylphosphonate utilization protein PhnG compare
RR42_RS21695 +0.5 1.4 DNA-binding protein compare
RR42_RS18640 +0.5 1.9 ester cyclase compare
RR42_RS21505 +0.5 0.7 hypothetical protein compare
RR42_RS33690 +0.5 0.6 phosphate acetyltransferase compare
RR42_RS26400 +0.5 1.7 structural protein MipA compare
RR42_RS10240 +0.5 1.5 hypothetical protein compare
RR42_RS05210 +0.5 3.3 malic enzyme compare
RR42_RS03320 +0.5 1.1 transcriptional regulator compare
RR42_RS03750 +0.5 2.8 formate dehydrogenase compare
RR42_RS11520 +0.5 1.2 ABC transporter ATP-binding protein compare
RR42_RS26320 +0.5 1.7 LysR family transcriptional regulator compare
RR42_RS15705 +0.5 2.3 glycosyl transferase family 1 compare
RR42_RS25730 +0.5 2.4 hypothetical protein compare
RR42_RS07480 +0.5 2.5 ADP-ribose pyrophosphatase compare
RR42_RS17610 +0.5 3.5 malate dehydrogenase compare
RR42_RS03765 +0.5 1.6 formate dehydrogenase compare
RR42_RS28315 +0.5 1.3 GntR family transcriptional regulator compare
RR42_RS08240 +0.5 1.4 DNA-binding protein compare
RR42_RS25895 +0.5 1.4 IclR family transcriptional regulator compare
RR42_RS05225 +0.5 2.3 MFS transporter compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Histidine in Cupriavidus basilensis FW507-4G11

For carbon source L-Histidine across organisms