Experiment set2IT072 for Burkholderia phytofirmans PsJN

Compare to:

Trisodium citrate dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17675 -7.2 -2.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16270 -6.9 -6.0 phosphoglycerate kinase compare
BPHYT_RS02610 -6.9 -6.7 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS06555 -6.7 -10.3 ketol-acid reductoisomerase compare
BPHYT_RS16835 -6.3 -7.5 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17680 -6.2 -4.7 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17670 -6.0 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33915 -5.9 -9.6 isopropylmalate isomerase compare
BPHYT_RS33835 -5.7 -11.5 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS15920 -5.7 -14.2 argininosuccinate synthase compare
BPHYT_RS04955 -5.6 -2.9 methionyl-tRNA synthetase compare
BPHYT_RS12815 -5.6 -10.1 IclR family transcriptional regulator compare
BPHYT_RS12985 -5.5 -3.8 amino acid acetyltransferase compare
BPHYT_RS33900 -5.5 -14.7 3-isopropylmalate dehydrogenase compare
BPHYT_RS17395 -5.5 -2.8 anthranilate synthase subunit II compare
BPHYT_RS13705 -5.5 -5.1 chorismate synthase compare
BPHYT_RS17855 -5.3 -19.4 glutamate synthase compare
BPHYT_RS08850 -5.3 -3.6 transcriptional regulator compare
BPHYT_RS17890 -5.3 -3.3 shikimate kinase compare
BPHYT_RS18320 -5.2 -13.1 orotate phosphoribosyltransferase compare
BPHYT_RS14915 -5.2 -8.0 phosphoserine aminotransferase compare
BPHYT_RS33880 -5.1 -8.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS33865 -5.0 -10.5 tryptophan synthase alpha chain compare
BPHYT_RS14190 -5.0 -11.5 carbamoyl phosphate synthase large subunit compare
BPHYT_RS14895 -4.9 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33875 -4.9 -7.6 tryptophan synthase subunit alpha compare
BPHYT_RS14910 -4.9 -13.6 chorismate mutase compare
BPHYT_RS17685 -4.9 -10.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS06545 -4.9 -15.3 acetolactate synthase compare
BPHYT_RS03640 -4.9 -4.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS03150 -4.8 -11.4 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS20095 -4.8 -1.7 transcriptional regulator compare
BPHYT_RS12530 -4.8 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS08960 -4.8 -2.9 threonine synthase compare
BPHYT_RS09515 -4.8 -5.6 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16675 -4.7 -3.2 dihydroorotase compare
BPHYT_RS17400 -4.6 -7.3 anthranilate phosphoribosyltransferase compare
BPHYT_RS17690 -4.5 -14.7 imidazole glycerol phosphate synthase compare
BPHYT_RS06900 -4.4 -7.9 aspartate aminotransferase compare
BPHYT_RS15915 -4.4 -15.9 ornithine carbamoyltransferase compare
BPHYT_RS14865 -4.4 -6.0 UDP-glucose 6-dehydrogenase compare
BPHYT_RS02590 -4.4 -8.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS08955 -4.4 -7.0 homoserine dehydrogenase compare
BPHYT_RS16245 -4.3 -7.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06405 -4.3 -8.1 phosphoribosylamine--glycine ligase compare
BPHYT_RS08565 -4.3 -2.1 dihydroorotate dehydrogenase compare
BPHYT_RS09500 -4.3 -7.7 glucose-6-phosphate isomerase compare
BPHYT_RS17715 -4.2 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS12845 -4.2 -18.7 ATPase compare
BPHYT_RS17390 -4.2 -13.6 anthranilate synthase subunit I compare
BPHYT_RS14845 -4.1 -4.5 cysteine synthase compare
BPHYT_RS12285 -4.1 -11.0 isocitrate lyase compare
BPHYT_RS33645 -4.0 -8.0 homoserine kinase compare
BPHYT_RS15710 -4.0 -3.4 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS01595 -3.9 -9.3 homoserine O-acetyltransferase compare
BPHYT_RS33840 -3.9 -7.6 amidophosphoribosyltransferase compare
BPHYT_RS16255 -3.8 -5.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16905 -3.8 -5.8 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS14195 -3.7 -3.9 carbamoyl phosphate synthase small subunit compare
BPHYT_RS03725 -3.5 -2.9 serine hydroxymethyltransferase compare
BPHYT_RS20090 -3.5 -4.9 nitrate ABC transporter substrate-binding protein compare
BPHYT_RS17885 -3.5 -6.4 3-dehydroquinate synthase compare
BPHYT_RS17380 -3.3 -13.0 ribulose-phosphate 3-epimerase compare
BPHYT_RS17700 -3.3 -4.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS08245 -3.2 -7.6 anti-sigma factor compare
BPHYT_RS03570 -3.1 -11.5 heat-inducible transcription repressor HrcA compare
BPHYT_RS06610 -3.0 -1.9 triosephosphate isomerase compare
BPHYT_RS02860 -2.9 -1.8 membrane protein compare
BPHYT_RS17405 -2.8 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS09160 -2.8 -5.5 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS35885 -2.7 -5.4 hypothetical protein compare
BPHYT_RS01590 -2.7 -8.7 methionine biosynthesis protein MetW compare
BPHYT_RS06685 -2.6 -3.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS16840 -2.6 -4.2 transketolase compare
BPHYT_RS06530 -2.5 -2.8 membrane protein compare
BPHYT_RS06175 -2.5 -8.9 LPS biosynthesis compare
BPHYT_RS12465 -2.4 -4.0 inositol monophosphatase compare
BPHYT_RS20085 -2.3 -2.0 mannosyltransferase compare
BPHYT_RS23840 -2.3 -3.9 methyltransferase compare
BPHYT_RS28705 -2.3 -2.3 IclR family transcriptional regulator compare
BPHYT_RS06190 -2.3 -4.4 heptosyltransferase compare
BPHYT_RS03535 -2.3 -7.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS15620 -2.2 -3.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS04385 -2.2 -5.4 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS14900 -2.2 -3.3 prephenate dehydrogenase compare
BPHYT_RS18340 -2.1 -2.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS04290 -2.1 -2.7 glycosyl transferase family 2 compare
BPHYT_RS33870 -2.1 -8.0 DNA methylase N-4 compare
BPHYT_RS02865 -2.0 -4.0 hypothetical protein compare
BPHYT_RS19570 -2.0 -12.2 sodium/hydrogen exchanger compare
BPHYT_RS15670 -2.0 -5.0 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS19565 -2.0 -7.4 gamma-glutamyl:cysteine ligase compare
BPHYT_RS11325 -2.0 -8.0 voltage-gated chloride channel protein ClcB compare
BPHYT_RS13220 -1.9 -8.8 phosphomethylpyrimidine synthase compare
BPHYT_RS31815 -1.9 -4.9 hypothetical protein compare
BPHYT_RS10100 -1.9 -4.2 dihydroxy-acid dehydratase compare
BPHYT_RS18705 -1.9 -1.7 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS16340 -1.8 -8.4 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS16470 -1.8 -6.0 DeoR faimly transcriptional regulator compare
BPHYT_RS33905 -1.8 -0.9 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS29520 -1.7 -1.3 hypothetical protein compare
BPHYT_RS06045 -1.7 -7.6 transaldolase compare
BPHYT_RS02965 -1.7 -3.2 membrane protein compare
BPHYT_RS03645 -1.7 -2.0 tRNA dimethylallyltransferase compare
BPHYT_RS16975 -1.6 -4.9 shikimate 5-dehydrogenase compare
BPHYT_RS34490 -1.6 -1.5 hypothetical protein compare
BPHYT_RS00310 -1.6 -8.3 hypothetical protein compare
BPHYT_RS33610 -1.5 -2.2 DNA polymerase I compare
BPHYT_RS10740 -1.5 -2.0 LuxR family transcriptional regulator compare
BPHYT_RS26355 -1.5 -2.2 hypothetical protein compare
BPHYT_RS16345 -1.5 -5.1 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS15645 -1.5 -7.2 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS22360 -1.4 -3.4 response regulator receiver compare
BPHYT_RS04095 -1.4 -1.6 SAM-dependent methyltransferase PhcB compare
BPHYT_RS01455 -1.4 -1.1 peptide deformylase compare
BPHYT_RS19610 -1.4 -2.2 general secretion pathway protein GspC compare
BPHYT_RS06350 -1.4 -2.5 chemotaxis protein CheY compare
BPHYT_RS06550 -1.4 -3.6 acetolactate synthase compare
BPHYT_RS04335 -1.4 -2.0 membrane protein compare
BPHYT_RS06505 -1.3 -9.2 TetR family transcriptional regulator compare
BPHYT_RS12055 -1.3 -11.3 phosphoenolpyruvate synthase compare
BPHYT_RS20305 -1.3 -5.1 hypothetical protein compare
BPHYT_RS06535 -1.3 -2.1 membrane protein compare
BPHYT_RS31910 -1.3 -1.4 hypothetical protein compare
BPHYT_RS33920 -1.3 -7.0 type II citrate synthase compare
BPHYT_RS16085 -1.3 -4.0 DeoR faimly transcriptional regulator compare
BPHYT_RS15650 -1.3 -7.5 quinolinate synthetase compare
BPHYT_RS04720 -1.3 -3.7 transcriptional regulator compare
BPHYT_RS08125 -1.3 -7.5 ATPase compare
BPHYT_RS04370 -1.3 -2.0 glycosyl transferase compare
BPHYT_RS03730 -1.3 -2.6 transcriptional repressor NrdR compare
BPHYT_RS27430 -1.3 -2.0 LysR family transcriptional regulator compare
BPHYT_RS32260 -1.3 -1.5 hypothetical protein compare
BPHYT_RS07565 -1.3 -5.7 urocanate hydratase compare
BPHYT_RS08060 -1.3 -5.0 ribosome maturation factor RimP compare
BPHYT_RS00340 -1.3 -2.3 hypothetical protein compare
BPHYT_RS23570 -1.3 -6.4 chemotaxis protein CheY compare
BPHYT_RS27175 -1.2 -1.1 DNA-binding protein compare
BPHYT_RS12990 -1.2 -2.7 iron transporter compare
BPHYT_RS12840 -1.2 -3.7 pyruvate dehydrogenase compare
BPHYT_RS21625 -1.2 -1.2 LysR family transcriptional regulator compare
BPHYT_RS33580 -1.2 -3.6 geranyltranstransferase compare
BPHYT_RS06375 -1.2 -5.7 ribonuclease compare
BPHYT_RS35770 -1.2 -1.2 glyoxalase compare
BPHYT_RS16080 -1.2 -3.8 xylulokinase compare
BPHYT_RS29320 -1.1 -2.4 histidine kinase compare
BPHYT_RS06345 -1.1 -5.1 sensor histidine kinase compare
BPHYT_RS01530 -1.1 -1.8 penicillin-binding protein 2 compare
BPHYT_RS34810 -1.1 -4.9 RND transporter compare
BPHYT_RS02885 -1.1 -6.8 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS06325 -1.1 -3.7 ATPase compare
BPHYT_RS02570 -1.1 -4.1 phosphocarrier protein HPr compare
BPHYT_RS21990 -1.1 -2.4 FAD-dependent oxidoreductase compare
BPHYT_RS15640 -1.1 -8.8 L-aspartate oxidase compare
BPHYT_RS12615 -1.1 -1.5 dihydrodipicolinate synthase compare
BPHYT_RS03220 -1.1 -6.4 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
BPHYT_RS13890 -1.1 -2.8 RpiR family transcriptional regulator compare
BPHYT_RS18760 -1.1 -1.7 flagellar biosynthesis protein FliT compare
BPHYT_RS23940 -1.1 -1.6 GntR family transcriptional regulator compare
BPHYT_RS33990 -1.1 -0.9 ATPase compare
BPHYT_RS14245 -1.1 -1.3 membrane protein compare
BPHYT_RS11125 -1.0 -1.5 alkylhydroperoxidase compare
BPHYT_RS05320 -1.0 -1.5 beta-lactamase compare
BPHYT_RS30340 -1.0 -1.8 AraC family transcriptional regulator compare
BPHYT_RS20790 -1.0 -1.6 TetR family transcriptional regulator compare
BPHYT_RS23650 -1.0 -0.9 hypothetical protein compare
BPHYT_RS33150 -1.0 -0.9 beta-lactamase compare
BPHYT_RS09260 -1.0 -3.6 histidine kinase compare
BPHYT_RS20155 -1.0 -1.7 hypothetical protein compare
BPHYT_RS30140 -1.0 -1.2 3-methylitaconate isomerase compare
BPHYT_RS20165 -1.0 -2.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS11285 -1.0 -2.7 LacI family transcription regulator compare
BPHYT_RS33655 -1.0 -3.7 MarR family transcriptional regulator compare
BPHYT_RS33615 -0.9 -2.3 decarboxylase compare
BPHYT_RS15075 -0.9 -1.9 dihydrokaempferol 4-reductase compare
BPHYT_RS17905 -0.9 -2.3 fimbrial assembly family protein compare
BPHYT_RS09650 -0.9 -2.0 hypothetical protein compare
BPHYT_RS02285 -0.9 -3.8 cell division protein compare
BPHYT_RS23090 -0.9 -1.7 histidine kinase compare
BPHYT_RS05775 -0.9 -3.0 hypothetical protein compare
BPHYT_RS04725 -0.9 -4.8 sulfite reductase compare
BPHYT_RS01485 -0.9 -0.8 histidine kinase compare
BPHYT_RS10475 -0.9 -1.2 mammalian cell entry protein compare
BPHYT_RS13605 -0.9 -0.8 tRNA-Pro compare
BPHYT_RS17525 -0.9 -2.3 glutaredoxin compare
BPHYT_RS06410 -0.9 -1.5 transcriptional regulator compare
BPHYT_RS18710 -0.9 -1.1 membrane protein compare
BPHYT_RS10540 -0.9 -1.1 secretion protein compare
BPHYT_RS11745 -0.9 -1.2 (2Fe-2S)-binding protein compare
BPHYT_RS02690 -0.9 -4.7 protoheme IX farnesyltransferase compare
BPHYT_RS17920 -0.9 -1.2 protein CyaY compare
BPHYT_RS03625 -0.9 -4.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS25770 -0.8 -1.0 hypothetical protein compare
BPHYT_RS04455 -0.8 -1.1 glycosyl transferase compare
BPHYT_RS04965 -0.8 -4.2 ATP-binding protein compare
BPHYT_RS14920 -0.8 -1.6 hypothetical protein compare
BPHYT_RS21030 -0.8 -1.5 ABC transporter ATP-binding protein compare
BPHYT_RS25780 -0.8 -1.0 DeoR faimly transcriptional regulator compare
BPHYT_RS32200 -0.8 -2.1 lytic transglycosylase compare
BPHYT_RS19630 -0.8 -2.1 general secretion pathway protein J compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Trisodium citrate dihydrate in Burkholderia phytofirmans PsJN

For carbon source Trisodium citrate dihydrate across organisms