Experiment set2IT072 for Burkholderia phytofirmans PsJN

Compare to:

Trisodium citrate dihydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS19975 +4.2 29.2 IclR family transcriptional regulator compare
BPHYT_RS35385 +1.6 10.4 GntR family transcriptional regulator compare
BPHYT_RS20100 +1.4 5.1 sensor histidine kinase conserved
BPHYT_RS01625 +1.3 5.6 chemotaxis protein CheY compare
BPHYT_RS02575 +1.3 9.3 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS07425 +1.1 2.5 hypothetical protein compare
BPHYT_RS02660 +1.0 1.6 membrane protein compare
BPHYT_RS23395 +1.0 2.4 glycosyl transferase compare
BPHYT_RS13320 +1.0 1.4 allantoate amidohydrolase compare
BPHYT_RS21805 +1.0 2.3 transcriptional regulator compare
BPHYT_RS18945 +0.9 5.1 flagellar biosynthesis protein FlhB compare
BPHYT_RS16180 +0.9 1.2 TetR family transcriptional regulator compare
BPHYT_RS18970 +0.9 5.0 chemotaxis protein compare
BPHYT_RS18835 +0.9 1.6 flagellar biosynthesis protein FliR compare
BPHYT_RS27455 +0.9 1.6 rod shape-determining protein MreB compare
BPHYT_RS18830 +0.9 4.6 flagellar biosynthesis protein FliQ compare
BPHYT_RS15035 +0.9 3.7 hypothetical protein compare
BPHYT_RS21235 +0.9 2.8 hypothetical protein compare
BPHYT_RS20430 +0.8 1.9 3-dehydroquinate dehydratase compare
BPHYT_RS21585 +0.8 2.2 short-chain dehydrogenase compare
BPHYT_RS18860 +0.8 3.9 flagellar P-ring protein FlgI compare
BPHYT_RS22835 +0.8 1.1 flagellar motor protein MotA compare
BPHYT_RS00380 +0.8 2.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS18420 +0.8 2.4 hypothetical protein compare
BPHYT_RS01985 +0.8 2.6 hypothetical protein compare
BPHYT_RS01790 +0.8 5.9 LuxR family transcriptional regulator compare
BPHYT_RS18785 +0.8 1.8 flagellar assembly protein FliH compare
BPHYT_RS10040 +0.8 1.1 hypothetical protein compare
BPHYT_RS22400 +0.8 1.5 hypothetical protein compare
BPHYT_RS30265 +0.8 1.2 hypothetical protein compare
BPHYT_RS06335 +0.8 1.2 CopG family transcriptional regulator compare
BPHYT_RS25980 +0.8 1.0 urea carboxylase compare
BPHYT_RS18900 +0.8 6.3 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS18810 +0.8 4.8 flagellar motor switch protein FliM compare
BPHYT_RS30865 +0.8 2.3 sugar ABC transporter ATP-binding protein compare
BPHYT_RS18890 +0.8 4.5 flagellar basal body rod protein FlgC compare
BPHYT_RS28075 +0.8 1.1 cytochrome B561 compare
BPHYT_RS18935 +0.7 5.1 flagellar biosynthesis regulator FlhF compare
BPHYT_RS18940 +0.7 4.9 flagellar biosynthesis protein FlhA compare
BPHYT_RS33965 +0.7 2.2 methylcitrate synthase compare
BPHYT_RS23035 +0.7 1.2 hypothetical protein compare
BPHYT_RS18780 +0.7 4.7 flagellar motor switch protein FliG compare
BPHYT_RS16090 +0.7 1.4 hypothetical protein compare
BPHYT_RS25210 +0.7 1.0 drug:proton antiporter compare
BPHYT_RS32110 +0.7 2.4 transcriptional regulator compare
BPHYT_RS23830 +0.7 2.0 acetyl-CoA hydrolase compare
BPHYT_RS11400 +0.7 1.9 hypothetical protein compare
BPHYT_RS00955 +0.7 2.5 DNA polymerase compare
BPHYT_RS09980 +0.7 1.3 TetR family transcriptional regulator compare
BPHYT_RS29550 +0.7 1.6 RND transporter compare
BPHYT_RS11825 +0.7 1.0 cytosine deaminase compare
BPHYT_RS08945 +0.7 4.9 hypothetical protein compare
BPHYT_RS18825 +0.7 3.5 flagellar biosynthesis protein FliP compare
BPHYT_RS05610 +0.7 4.8 DNA-cytosine methyltransferase compare
BPHYT_RS04875 +0.7 1.4 alpha-ribazole phosphatase compare
BPHYT_RS18875 +0.7 3.0 flagellar basal body rod protein FlgF compare
BPHYT_RS13555 +0.7 1.0 acyl-CoA dehydrogenase compare
BPHYT_RS18795 +0.7 4.0 flagellar export protein FliJ compare
BPHYT_RS28690 +0.7 1.2 diguanylate phosphodiesterase compare
BPHYT_RS01795 +0.7 4.1 histidine kinase compare
BPHYT_RS22715 +0.7 1.5 L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) (from data) compare
BPHYT_RS34620 +0.7 1.5 hypothetical protein compare
BPHYT_RS18790 +0.7 4.4 ATP synthase compare
BPHYT_RS18775 +0.7 4.8 flagellar M-ring protein FliF compare
BPHYT_RS27440 +0.7 3.3 type II citrate synthase compare
BPHYT_RS05330 +0.6 1.6 phosphohydrolase compare
BPHYT_RS31675 +0.6 1.4 hypothetical protein compare
BPHYT_RS28370 +0.6 1.1 peroxidase compare
BPHYT_RS20630 +0.6 1.1 patatin compare
BPHYT_RS17050 +0.6 1.8 hypothetical protein compare
BPHYT_RS27445 +0.6 2.4 hypothetical protein compare
BPHYT_RS05190 +0.6 3.0 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS27410 +0.6 1.5 amidohydrolase compare
BPHYT_RS29065 +0.6 2.5 hypothetical protein compare
BPHYT_RS11970 +0.6 1.1 cupin compare
BPHYT_RS18885 +0.6 2.6 flagellar basal body rod modification protein FlgD compare
BPHYT_RS02770 +0.6 2.5 membrane protein compare
BPHYT_RS36130 +0.6 1.3 hypothetical protein compare
BPHYT_RS12920 +0.6 2.0 hypothetical protein compare
BPHYT_RS36400 +0.6 1.1 hypothetical protein compare
BPHYT_RS10240 +0.6 0.8 translation initiation inhibitor compare
BPHYT_RS26960 +0.6 2.2 LysR family transcriptional regulator compare
BPHYT_RS31205 +0.6 1.6 peptide ABC transporter ATP-binding protein compare
BPHYT_RS09365 +0.6 0.9 cytochrome C2 compare
BPHYT_RS18895 +0.6 2.5 flagellar basal body rod protein FlgB compare
BPHYT_RS11275 +0.6 3.3 hypothetical protein compare
BPHYT_RS29060 +0.6 2.3 hypothetical protein compare
BPHYT_RS06105 +0.6 0.7 hypothetical protein compare
BPHYT_RS09330 +0.6 5.1 phytoene synthase compare
BPHYT_RS22470 +0.6 1.0 hydrolase compare
BPHYT_RS30890 +0.6 1.1 hypothetical protein compare
BPHYT_RS21075 +0.6 1.1 (2Fe-2S)-binding protein compare
BPHYT_RS25075 +0.6 1.0 AraC family transcriptional regulator compare
BPHYT_RS21470 +0.6 1.8 6-hydroxynicotinate reductase compare
BPHYT_RS29400 +0.6 2.1 MFS transporter compare
BPHYT_RS24040 +0.6 1.8 amino acid ABC transporter compare
BPHYT_RS06725 +0.6 2.0 MaoC family dehydratase compare
BPHYT_RS11555 +0.6 1.7 allantoinase compare
BPHYT_RS08715 +0.6 2.1 adenylyl-sulfate kinase compare
BPHYT_RS35395 +0.6 1.6 membrane protein compare
BPHYT_RS01620 +0.6 4.2 sensor histidine kinase compare
BPHYT_RS17410 +0.6 3.3 adenylate cyclase compare
BPHYT_RS18880 +0.6 4.2 flagellar hook protein FlgE compare
BPHYT_RS01040 +0.6 2.3 Fis family transcriptional regulator compare
BPHYT_RS23460 +0.6 0.8 AraC family transcriptional regulator compare
BPHYT_RS18865 +0.6 2.2 flagellar L-ring protein FlgH compare
BPHYT_RS24285 +0.6 1.0 TetR family transcriptional regulator compare
BPHYT_RS21355 +0.6 3.9 major facilitator transporter compare
BPHYT_RS23440 +0.6 2.7 alcohol dehydrogenase compare
BPHYT_RS17185 +0.6 3.3 N-acetylglutamate synthase compare
BPHYT_RS08405 +0.6 1.1 hypothetical protein compare
BPHYT_RS25445 +0.6 1.6 alkyl hydroperoxide reductase compare
BPHYT_RS18870 +0.6 3.3 flagellar basal body rod protein FlgG compare
BPHYT_RS11230 +0.6 3.1 hypothetical protein compare
BPHYT_RS16335 +0.6 0.8 membrane protein compare
BPHYT_RS33460 +0.6 0.7 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS21850 +0.6 2.6 pyrimidine reductase compare
BPHYT_RS08190 +0.6 0.9 type II secretion system protein compare
BPHYT_RS03015 +0.6 0.7 aldolase compare
BPHYT_RS07920 +0.6 1.4 hypothetical protein compare
BPHYT_RS25590 +0.5 1.5 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS36320 +0.5 1.1 type IV secretion system family protein compare
BPHYT_RS26465 +0.5 0.9 metallophosphoesterase compare
BPHYT_RS36090 +0.5 1.4 hypothetical protein compare
BPHYT_RS05085 +0.5 1.8 LysR family transcriptional regulator compare
BPHYT_RS04140 +0.5 2.3 polysaccharide biosynthesis protein compare
BPHYT_RS07190 +0.5 2.2 acetyltransferase compare
BPHYT_RS33185 +0.5 2.6 methyltransferase type 11 compare
BPHYT_RS20835 +0.5 1.8 pyridoxal 4-dehydrogenase compare
BPHYT_RS25450 +0.5 0.8 membrane protein compare
BPHYT_RS07835 +0.5 1.5 muconolactone delta-isomerase compare
BPHYT_RS30610 +0.5 1.5 major facilitator transporter compare
BPHYT_RS08455 +0.5 3.7 ribonuclease R compare
BPHYT_RS16020 +0.5 1.3 AsnC family transcriptional regulator compare
BPHYT_RS10695 +0.5 1.0 aromatic-ring-hydroxylating dioxygenase subunit beta compare
BPHYT_RS03975 +0.5 2.5 AraC family transcriptional regulator compare
BPHYT_RS22320 +0.5 1.5 hypothetical protein compare
BPHYT_RS23930 +0.5 1.8 triphosphoribosyl-dephospho-CoA synthase compare
BPHYT_RS20110 +0.5 2.1 sensor histidine kinase compare
BPHYT_RS20520 +0.5 0.9 transcriptional regulator compare
BPHYT_RS03720 +0.5 2.4 malonic semialdehyde reductase compare
BPHYT_RS27435 +0.5 3.1 amylo-alpha-1,6-glucosidase compare
BPHYT_RS28900 +0.5 1.2 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BPHYT_RS11170 +0.5 0.8 hypothetical protein compare
BPHYT_RS23475 +0.5 1.2 luciferase compare
BPHYT_RS25585 +0.5 1.3 membrane protein compare
BPHYT_RS18965 +0.5 1.2 chemotaxis protein CheY compare
BPHYT_RS23535 +0.5 1.0 ABC transporter substrate-binding protein compare
BPHYT_RS30300 +0.5 2.6 FMN reductase compare
BPHYT_RS14255 +0.5 4.3 ABC transporter compare
BPHYT_RS31015 +0.5 1.7 3-deoxy-manno-octulosonate cytidylyltransferase 2 compare
BPHYT_RS28285 +0.5 0.9 MFS transporter compare
BPHYT_RS31020 +0.5 1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS34505 +0.5 1.4 hypothetical protein compare
BPHYT_RS24390 +0.5 2.8 hypothetical protein compare
BPHYT_RS16855 +0.5 2.9 16S rRNA methyltransferase compare
BPHYT_RS10720 +0.5 0.8 hypothetical protein compare
BPHYT_RS27925 +0.5 1.2 tricarballylate dehydrogenase compare
BPHYT_RS13235 +0.5 2.6 lactate permease compare
BPHYT_RS20130 +0.5 1.6 diguanylate phosphodiesterase compare
BPHYT_RS23870 +0.5 1.9 LacI family transcription regulator compare
BPHYT_RS23225 +0.5 0.9 hypothetical protein compare
BPHYT_RS34430 +0.5 0.6 2-keto-4-pentenoate hydratase compare
BPHYT_RS11795 +0.5 0.8 membrane protein compare
BPHYT_RS08235 +0.5 0.7 nucleoprotein, Hfg, host factor I compare
BPHYT_RS25335 +0.5 0.6 hypothetical protein compare
BPHYT_RS32915 +0.5 2.9 LysR family transcriptional regulator compare
BPHYT_RS11215 +0.5 3.1 ribose ABC transporter ATPase compare
BPHYT_RS28780 +0.5 1.6 NADH:flavin oxidoreductase compare
BPHYT_RS08825 +0.5 0.7 tartronate semialdehyde reductase compare
BPHYT_RS03405 +0.5 2.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BPHYT_RS22500 +0.5 0.8 transcriptional regulator compare
BPHYT_RS23960 +0.5 2.2 sugar ABC transporter compare
BPHYT_RS21215 +0.5 2.0 Crp/Fnr family transcriptional regulator compare
BPHYT_RS30425 +0.5 0.9 LysR family transcriptional regulator compare
BPHYT_RS25500 +0.5 1.0 hypothetical protein compare
BPHYT_RS30085 +0.5 1.1 hypothetical protein compare
BPHYT_RS20115 +0.5 1.2 transcriptional regulator compare
BPHYT_RS10115 +0.5 0.5 hypothetical protein compare
BPHYT_RS07385 +0.5 1.8 glycosyl transferase family 1 compare
BPHYT_RS15040 +0.5 2.0 hypothetical protein compare
BPHYT_RS26290 +0.5 1.5 photosystem reaction center subunit H compare
BPHYT_RS22390 +0.5 3.6 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS11500 +0.5 0.9 ABC transporter permease compare
BPHYT_RS19545 +0.5 2.5 nuclear protein SET compare
BPHYT_RS31030 +0.5 2.0 tyrosine protein kinase compare
BPHYT_RS30880 +0.5 1.2 peptidase S13 compare
BPHYT_RS21765 +0.5 1.1 IclR family transcriptional regulator compare
BPHYT_RS31465 +0.5 1.2 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS28765 +0.5 1.2 fumarylacetoacetate hydrolase compare
BPHYT_RS31400 +0.5 0.6 methyl-accepting chemotaxis protein compare
BPHYT_RS01730 +0.5 1.0 serine/threonine protein kinase compare
BPHYT_RS19125 +0.5 1.8 short-chain dehydrogenase compare
BPHYT_RS23480 +0.5 1.7 hypothetical protein compare
BPHYT_RS23350 +0.5 1.1 NAD-dependent epimerase/dehydratase compare
BPHYT_RS30465 +0.5 0.7 short-chain dehydrogenase compare
BPHYT_RS23410 +0.5 1.6 hypothetical protein compare
BPHYT_RS11040 +0.5 0.8 GntR family transcriptional regulator compare
BPHYT_RS17370 +0.5 3.2 membrane protein compare
BPHYT_RS20880 +0.5 0.6 polyketide cyclase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Trisodium citrate dihydrate in Burkholderia phytofirmans PsJN

For carbon source Trisodium citrate dihydrate across organisms