Experiment set2IT071 for Herbaspirillum seropedicae SmR1

Compare to:

LB with Sodium nitrite 20 mM

200 most important genes:

  gene name fitness t score description  
HSERO_RS17810 -6.5 -2.0 glycosyl transferase compare
HSERO_RS16885 -6.0 -1.8 magnesium-transporting ATPase compare
HSERO_RS10805 -5.4 -2.7 succinyldiaminopimelate aminotransferase compare
HSERO_RS15630 -4.9 -1.5 exodeoxyribonuclease III compare
HSERO_RS19630 -4.8 -1.5 AMP nucleosidase compare
HSERO_RS13960 -4.2 -4.5 hypothetical protein compare
HSERO_RS17815 -4.1 -6.1 glycosyl transferase compare
HSERO_RS17980 -4.1 -3.4 GTP-binding protein compare
HSERO_RS08405 -3.8 -3.2 membrane protein compare
HSERO_RS17105 -3.7 -3.2 DNA polymerase III subunit epsilon compare
HSERO_RS02090 -3.5 -1.5 Holliday junction DNA helicase RuvA compare
HSERO_RS11465 -3.4 -2.3 sodium:proton antiporter compare
HSERO_RS05515 -3.3 -1.4 glucose-6-phosphate isomerase compare
HSERO_RS19265 -3.2 -2.4 LysR family transcriptional regulator compare
HSERO_RS07345 -3.1 -1.6 hypothetical protein compare
HSERO_RS17110 -3.1 -3.6 ribonuclease H compare
HSERO_RS03350 -3.0 -5.4 hypothetical protein compare
HSERO_RS11615 -2.8 -7.4 hypothetical protein compare
HSERO_RS15070 -2.4 -2.0 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS21475 -2.4 -1.8 recombinase XerC compare
HSERO_RS23945 -2.3 -3.2 cobyric acid synthase CobQ compare
HSERO_RS02215 -2.3 -1.2 D-arabinitol 4-dehydrogenase compare
HSERO_RS11610 -2.2 -5.6 NADH dehydrogenase compare
HSERO_RS02145 -2.2 -1.5 ferritin compare
HSERO_RS10395 -2.1 -1.5 phosphate transport regulator compare
HSERO_RS15575 -2.0 -1.7 uroporphyrin-III C-methyltransferase compare
HSERO_RS02160 -2.0 -1.9 DNA-dependent helicase compare
HSERO_RS16370 -1.9 -1.4 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS12975 -1.9 -2.2 phytoene synthase compare
HSERO_RS03440 -1.8 -2.3 biopolymer transporter ExbD compare
HSERO_RS18010 -1.8 -2.6 pseudouridine synthase compare
HSERO_RS13260 -1.8 -2.3 cobinamide adenolsyltransferase compare
HSERO_RS18875 -1.8 -1.4 ATPase compare
HSERO_RS13320 -1.8 -2.6 membrane protein compare
HSERO_RS03450 -1.8 -2.2 energy transducer protein TonB compare
HSERO_RS07970 -1.8 -1.9 formyltetrahydrofolate deformylase compare
HSERO_RS09775 -1.7 -1.6 cobalamin synthase compare
HSERO_RS05440 -1.7 -1.4 hypothetical protein compare
HSERO_RS19525 -1.7 -2.4 PTS sugar transporter subunit IIA compare
HSERO_RS22355 -1.7 -2.9 urea carboxylase compare
HSERO_RS08515 -1.7 -3.4 diguanylate cyclase compare
HSERO_RS11605 -1.7 -3.5 LysR family transcriptional regulator compare
HSERO_RS18455 -1.6 -1.9 phosphoglycolate phosphatase compare
HSERO_RS09435 -1.5 -2.0 S-adenosylmethionine-dependent methyltransferase compare
HSERO_RS04330 -1.5 -5.9 ATP-dependent exonuclease compare
HSERO_RS03575 -1.5 -2.0 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS06650 -1.5 -5.0 MarR family transcriptional regulator compare
HSERO_RS03270 -1.5 -3.7 protein RecA compare
HSERO_RS08790 -1.5 -1.4 hypothetical protein compare
HSERO_RS03540 -1.5 -1.1 dimethyladenosine transferase compare
HSERO_RS09660 -1.5 -1.6 ribonuclease III compare
HSERO_RS03235 -1.5 -1.4 hypothetical protein compare
HSERO_RS19995 -1.5 -1.0 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS09565 -1.5 -6.9 nitrite efflux transporter, HPP family (from data) conserved
HSERO_RS19835 -1.5 -1.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS10340 -1.4 -2.5 flagellar biosynthesis protein FliS compare
HSERO_RS14935 -1.4 -0.9 hypothetical protein compare
HSERO_RS13285 -1.4 -2.1 precorrin-2 C20-methyltransferase compare
HSERO_RS13255 -1.4 -4.1 cobyrinic acid a,c-diamide synthase compare
HSERO_RS15835 -1.4 -1.9 aspartate aminotransferase compare
HSERO_RS21340 -1.4 -3.3 septum formation inhibitor protein compare
HSERO_RS19520 -1.4 -1.1 hypothetical protein compare
HSERO_RS15665 -1.4 -1.2 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS00180 -1.4 -1.1 hypothetical protein compare
HSERO_RS09155 -1.4 -5.4 DNA topoisomerase IV subunit B compare
HSERO_RS10850 -1.4 -1.9 ABC transporter compare
HSERO_RS09255 -1.3 -1.4 molybdenum cofactor biosynthesis protein MogA compare
HSERO_RS15875 -1.3 -2.9 zinc ABC transporter permease compare
HSERO_RS04475 -1.3 -1.4 tail fiber assembly protein compare
HSERO_RS20315 -1.3 -2.7 imidazole glycerol phosphate synthase compare
HSERO_RS13280 -1.3 -1.8 precorrin-4 C11-methyltransferase compare
HSERO_RS13310 -1.3 -6.0 cobaltochelatase compare
HSERO_RS02450 -1.3 -1.6 arsenate reductase compare
HSERO_RS09770 -1.3 -2.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS06175 -1.2 -3.7 queuine tRNA-ribosyltransferase compare
HSERO_RS07600 -1.2 -3.2 threonine-phosphate decarboxylase compare
HSERO_RS10865 -1.2 -3.4 PII uridylyl-transferase compare
HSERO_RS03285 -1.2 -1.1 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS07710 -1.2 -1.1 hypothetical protein compare
HSERO_RS03240 -1.2 -1.5 membrane protein compare
HSERO_RS03085 -1.2 -1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS20345 -1.1 -3.6 histidinol dehydrogenase compare
HSERO_RS17720 -1.1 -4.7 aminopeptidase N compare
HSERO_RS18555 -1.1 -4.2 phosphopantetheinyl transferase compare
HSERO_RS02255 -1.1 -3.7 decarboxylase compare
HSERO_RS07355 -1.1 -1.4 hypothetical protein compare
HSERO_RS19575 -1.1 -1.9 50S ribosomal protein L25 compare
HSERO_RS09650 -1.1 -1.8 elongation factor 4 compare
HSERO_RS01365 -1.1 -1.6 TetR family transcriptional regulator compare
HSERO_RS08430 -1.1 -2.4 diguanylate cyclase compare
HSERO_RS22625 -1.1 -1.3 LysR family transcriptional regulator compare
HSERO_RS04335 -1.1 -2.1 sodium:proton antiporter compare
HSERO_RS21240 -1.1 -1.3 polar amino acid ABC transporter permease compare
HSERO_RS01265 -1.1 -3.3 acetyl-CoA acetyltransferase compare
HSERO_RS03995 -1.1 -2.0 hypothetical protein compare
HSERO_RS18015 -1.1 -1.2 transcriptional regulator compare
HSERO_RS11115 -1.1 -1.7 citrate transporter compare
HSERO_RS08605 -1.1 -1.2 Hsp33 chaperonin compare
HSERO_RS03445 -1.0 -3.6 biopolymer transport transmembrane protein compare
HSERO_RS02765 -1.0 -1.1 general stress protein compare
HSERO_RS02260 -1.0 -2.9 DNA polymerase I compare
HSERO_RS01540 -1.0 -3.4 membrane protein compare
HSERO_RS12920 -1.0 -0.9 trigger factor compare
HSERO_RS19135 -1.0 -1.2 exodeoxyribonuclease compare
HSERO_RS12300 -1.0 -3.0 hypothetical protein compare
HSERO_RS14840 -1.0 -2.3 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS06510 -1.0 -2.6 hypothetical protein compare
HSERO_RS12470 -1.0 -1.7 chemotaxis protein CheY compare
HSERO_RS23600 -1.0 -2.6 urea ABC transporter ATP-binding protein compare
HSERO_RS21740 -1.0 -3.7 methionine synthase compare
HSERO_RS15865 -1.0 -2.1 antibiotic biosynthesis monooxygenase compare
HSERO_RS13515 -1.0 -2.0 XRE family transcriptional regulator compare
HSERO_RS14275 -1.0 -1.5 nitrogen fixation protein NifX compare
HSERO_RS04230 -1.0 -2.1 LuxR family transcriptional regulator compare
HSERO_RS09290 -1.0 -2.6 ribonuclease R compare
HSERO_RS18690 -1.0 -1.4 short-chain dehydrogenase compare
HSERO_RS09640 -1.0 -2.6 peptidase compare
HSERO_RS20405 -1.0 -2.6 GTP-binding protein YchF compare
HSERO_RS18070 -1.0 -2.2 hypothetical protein compare
HSERO_RS15780 -1.0 -2.6 GntR family transcriptional regulator compare
HSERO_RS12775 -1.0 -2.4 ABC transporter substrate-binding protein compare
HSERO_RS09335 -1.0 -1.0 DNA-3-methyladenine glycosylase compare
HSERO_RS23435 -1.0 -1.5 MerR family transcriptional regulator compare
HSERO_RS07385 -0.9 -0.8 hypothetical protein compare
HSERO_RS02610 -0.9 -1.1 hypothetical protein compare
HSERO_RS01255 -0.9 -4.0 acyl-CoA dehydrogenase compare
HSERO_RS03840 -0.9 -1.4 hypothetical protein compare
HSERO_RS20325 -0.9 -3.6 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS04265 -0.9 -1.0 tyrosine recombinase XerD compare
HSERO_RS07910 -0.9 -2.1 alkylhydroperoxidase compare
HSERO_RS02700 -0.9 -1.1 hypothetical protein compare
HSERO_RS20250 -0.9 -0.8 large conductance mechanosensitive channel protein MscL compare
HSERO_RS04150 -0.9 -0.9 hypothetical protein compare
HSERO_RS04155 -0.9 -0.8 hypothetical protein compare
HSERO_RS04325 -0.9 -3.1 helicase I compare
HSERO_RS17570 -0.9 -1.0 4-carboxymuconolactone decarboxylase compare
HSERO_RS02630 -0.9 -1.9 membrane protein compare
HSERO_RS08115 -0.9 -1.0 acyl-CoA-binding protein compare
HSERO_RS12540 -0.9 -0.9 hemerythrin compare
HSERO_RS14835 -0.9 -2.4 peptidase M23 compare
HSERO_RS04860 -0.9 -0.6 sugar ABC transporter permease compare
HSERO_RS01165 -0.9 -1.8 dihydroneopterin triphosphate pyrophosphatase compare
HSERO_RS00450 -0.9 -1.8 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS07110 -0.9 -1.8 16S rRNA methyltransferase compare
HSERO_RS23640 -0.9 -2.1 Ni/Fe hydrogenase compare
HSERO_RS10400 -0.9 -3.8 inorganic phosphate transporter compare
HSERO_RS14030 -0.8 -1.8 hypothetical protein compare
HSERO_RS08485 -0.8 -1.6 hypothetical protein compare
HSERO_RS23260 -0.8 -1.9 ABC transporter permease compare
HSERO_RS13450 -0.8 -1.5 malonate decarboxylase subunit gamma compare
HSERO_RS10815 -0.8 -2.6 chromosome segregation protein SMC compare
HSERO_RS05500 -0.8 -1.4 transaldolase compare
HSERO_RS16405 -0.8 -2.6 peptidase M50 compare
HSERO_RS16385 -0.8 -1.9 beta-lactamase compare
HSERO_RS19175 -0.8 -2.4 twitching motility protein compare
HSERO_RS09915 -0.8 -2.0 transcriptional regulator compare
HSERO_RS07730 -0.8 -2.6 ferredoxin-NADP reductase compare
HSERO_RS00805 -0.8 -1.4 preprotein translocase subunit SecB compare
HSERO_RS04170 -0.8 -0.8 hypothetical protein compare
HSERO_RS09375 -0.8 -1.4 hypothetical protein compare
HSERO_RS13265 -0.8 -1.5 G3E family GTPase compare
HSERO_RS10990 -0.8 -2.5 chemotaxis protein CheY compare
HSERO_RS08340 -0.8 -1.8 AsnC family transcriptional regulator compare
HSERO_RS01785 -0.8 -1.0 hypothetical protein compare
HSERO_RS13295 -0.8 -2.0 membrane protein compare
HSERO_RS00080 -0.8 -3.0 histidine kinase compare
HSERO_RS23650 -0.8 -1.2 phosphonate ABC transporter permease compare
HSERO_RS16565 -0.8 -1.4 hypothetical protein compare
HSERO_RS04435 -0.8 -1.6 oxidoreductase compare
HSERO_RS03875 -0.8 -0.8 hypothetical protein compare
HSERO_RS17500 -0.8 -2.2 transcriptional regulator compare
HSERO_RS20310 -0.8 -2.1 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS08235 -0.8 -2.9 sulfate ABC transporter permease compare
HSERO_RS17180 -0.8 -2.2 paraquat-inducible protein A compare
HSERO_RS14250 -0.8 -1.5 molybdate ABC transporter substrate-binding protein compare
HSERO_RS03700 -0.8 -1.1 type VI secretion protein compare
HSERO_RS15550 -0.8 -2.4 sulfite reductase compare
HSERO_RS16590 -0.8 -2.6 ABC transporter ATP-binding protein compare
HSERO_RS18515 -0.8 -1.6 membrane protein compare
HSERO_RS02470 -0.8 -2.5 tRNA (guanine-N7)-methyltransferase compare
HSERO_RS20330 -0.7 -2.5 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS03805 -0.7 -2.0 hypothetical protein compare
HSERO_RS20780 -0.7 -2.5 cytochrome C oxidase assembly protein compare
HSERO_RS15050 -0.7 -2.0 hypothetical protein compare
HSERO_RS16535 -0.7 -2.2 hypothetical protein compare
HSERO_RS17005 -0.7 -2.7 ABC transporter for D-sorbitol/xylitol, permease component 1 (from data) compare
HSERO_RS05605 -0.7 -2.1 homogentisate 1,2-dioxygenase compare
HSERO_RS05910 -0.7 -0.9 phosphoribosylglycinamide formyltransferase compare
HSERO_RS12435 -0.7 -1.1 dioxygenase compare
HSERO_RS16140 -0.7 -2.8 ADP-ribose pyrophosphatase compare
HSERO_RS18360 -0.7 -1.5 hypothetical protein compare
HSERO_RS21345 -0.7 -2.2 cell division inhibitor MinD compare
HSERO_RS13490 -0.7 -1.2 pseudouridine synthase compare
HSERO_RS11460 -0.7 -1.0 universal stress protein compare
HSERO_RS23445 -0.7 -1.1 2-hydroxychromene-2-carboxylate isomerase compare
HSERO_RS03145 -0.7 -3.1 poly(A) polymerase compare
HSERO_RS00745 -0.7 -1.9 alkylhydroperoxidase compare
HSERO_RS00400 -0.7 -2.0 CDP-alcohol phosphatidyltransferase compare
HSERO_RS16675 -0.7 -0.8 hypothetical protein compare
HSERO_RS07410 -0.7 -1.3 LysR family transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment

For stress Sodium nitrite in Herbaspirillum seropedicae SmR1

For stress Sodium nitrite across organisms