Experiment set2IT071 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -6.9 -4.8 5,10-methylenetetrahydrofolate reductase compare
RR42_RS18305 -6.6 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS14390 -6.3 -4.3 3-isopropylmalate dehydratase compare
RR42_RS14365 -6.0 -4.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS06485 -6.0 -5.9 chorismate synthase compare
RR42_RS33255 -5.9 -3.9 protein-tyrosine phosphatase compare
RR42_RS30655 -5.7 -5.5 LysR family transcriptional regulator compare
RR42_RS18300 -5.7 -5.5 anthranilate synthase subunit II compare
RR42_RS14400 -5.7 -5.5 isopropylmalate isomerase compare
RR42_RS01160 -5.6 -10.7 homoserine O-acetyltransferase compare
RR42_RS16255 -5.5 -8.3 sulfate adenylyltransferase compare
RR42_RS05860 -5.4 -5.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS17645 -4.9 -6.7 shikimate dehydrogenase compare
RR42_RS16265 -4.9 -3.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS19005 -4.8 -5.7 3-dehydroquinate synthase compare
RR42_RS14385 -4.6 -7.5 3-isopropylmalate dehydrogenase compare
RR42_RS04475 -4.6 -8.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16250 -4.6 -8.3 sulfate adenylyltransferase compare
RR42_RS16275 -4.6 -4.4 membrane protein compare
RR42_RS30660 -4.5 -8.3 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS33260 -4.5 -9.2 multidrug MFS transporter compare
RR42_RS18295 -4.4 -13.7 anthranilate synthase component I compare
RR42_RS19010 -4.2 -9.0 shikimate kinase compare
RR42_RS16245 -4.2 -6.3 uroporphyrin-III methyltransferase compare
RR42_RS16270 -4.2 -10.4 sulfite reductase compare
RR42_RS33250 -4.0 -9.2 tyrosine protein kinase compare
RR42_RS05990 -3.9 -10.0 aromatic amino acid aminotransferase compare
RR42_RS16280 -3.9 -7.6 transcriptional regulator compare
RR42_RS33210 -3.7 -5.0 teichoic acid biosynthesis protein compare
RR42_RS15415 -3.6 -3.6 membrane protein compare
RR42_RS02085 -3.5 -8.7 RNA polymerase subunit sigma-54 compare
RR42_RS33240 -3.5 -14.7 GDP-L-fucose synthase compare
RR42_RS18990 -3.5 -18.6 glutamate synthase compare
RR42_RS07365 -3.4 -4.0 pyruvate dehydrogenase compare
RR42_RS21220 -3.3 -2.1 iron transporter FeoB compare
RR42_RS12040 -3.3 -11.7 MFS transporter compare
RR42_RS04535 -3.3 -4.2 cysteine synthase compare
RR42_RS01845 -3.3 -2.1 glycerol-3-phosphate dehydrogenase compare
RR42_RS33245 -3.2 -9.4 mannose-1-phosphate guanyltransferase compare
RR42_RS15895 -3.2 -8.7 uroporphyrinogen III methyltransferase compare
RR42_RS33355 -3.1 -6.6 membrane protein compare
RR42_RS14320 -3.1 -4.5 O-succinylhomoserine sulfhydrylase compare
RR42_RS04460 -3.1 -7.1 chorismate mutase compare
RR42_RS01290 -3.0 -6.3 thiamine biosynthesis protein ThiC compare
RR42_RS02705 -2.9 -3.2 Holliday junction DNA helicase RuvA compare
RR42_RS30640 -2.9 -7.7 DNA mismatch repair protein MutT compare
RR42_RS18985 -2.9 -6.6 glutamate synthase compare
RR42_RS15890 -2.8 -8.5 heme biosynthesis protein HemY compare
RR42_RS15410 -2.7 -5.3 membrane protein compare
RR42_RS33235 -2.7 -8.7 GDP-mannose 4,6-dehydratase compare
RR42_RS16240 -2.6 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS14360 -2.4 -2.1 tryptophan synthase subunit alpha compare
RR42_RS18850 -2.4 -2.9 preprotein translocase subunit TatC compare
RR42_RS18310 -2.4 -2.1 indole-3-glycerol-phosphate synthase compare
RR42_RS07555 -2.4 -3.4 potassium transporter Kup compare
RR42_RS04470 -2.3 -5.8 prephenate dehydrogenase compare
RR42_RS17720 -2.2 -3.6 sugar kinase compare
RR42_RS02500 -2.2 -2.7 TetR family transcriptional regulator compare
RR42_RS20205 -2.2 -3.6 chromosome partitioning protein compare
RR42_RS18855 -2.2 -3.8 preprotein translocase compare
RR42_RS01920 -2.1 -4.1 protoheme IX farnesyltransferase compare
RR42_RS12550 -2.0 -2.5 hypothetical protein compare
RR42_RS16260 -2.0 -1.4 phosphoadenosine phosphosulfate reductase compare
RR42_RS12925 -1.9 -2.9 ATPase compare
RR42_RS14055 -1.9 -3.3 elongation factor 4 compare
RR42_RS17105 -1.9 -9.8 Clp protease ClpX compare
RR42_RS26935 -1.9 -5.8 farnesyl-diphosphate farnesyltransferase compare
RR42_RS21665 -1.9 -8.6 cobalt transporter compare
RR42_RS31435 -1.8 -1.9 hypothetical protein compare
RR42_RS02810 -1.8 -1.8 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS24605 -1.7 -8.4 TetR family transcriptional regulator compare
RR42_RS12015 -1.7 -3.4 dihydrolipoamide acyltransferase compare
RR42_RS14790 -1.7 -6.4 cobalamin biosynthesis protein CobD compare
RR42_RS13910 -1.7 -5.8 glutamate racemase compare
RR42_RS14235 -1.7 -1.5 hypothetical protein compare
RR42_RS09180 -1.6 -1.5 Rrf2 family transcriptional regulator compare
RR42_RS07565 -1.6 -5.8 transcription accessory protein compare
RR42_RS01380 -1.6 -1.6 membrane protein compare
RR42_RS17055 -1.6 -8.0 LuxR family transcriptional regulator compare
RR42_RS17050 -1.5 -5.9 phosphoribosylglycinamide formyltransferase compare
RR42_RS18270 -1.5 -4.7 murein transglycosylase compare
RR42_RS00380 -1.5 -7.1 GntR family transcriptional regulator compare
RR42_RS03095 -1.5 -2.1 succinyl-CoA synthetase subunit beta compare
RR42_RS18140 -1.5 -1.6 MarR family transcriptional regulator compare
RR42_RS15090 -1.4 -4.3 DNA helicase compare
RR42_RS06095 -1.4 -1.7 hypothetical protein compare
RR42_RS05485 -1.4 -3.0 polynucleotide phosphorylase/polyadenylase compare
RR42_RS18995 -1.4 -5.8 transposase compare
RR42_RS07630 -1.4 -2.6 methyltransferase type 12 compare
RR42_RS01695 -1.4 -8.6 C4-dicarboxylate transporter compare
RR42_RS18825 -1.4 -2.8 ubiquinol-cytochrome C reductase compare
RR42_RS01775 -1.4 -6.2 glutamate--cysteine ligase compare
RR42_RS06630 -1.4 -2.5 integration host factor subunit alpha compare
RR42_RS21000 -1.4 -2.9 glycosyl transferase compare
RR42_RS03670 -1.4 -1.8 isochorismatase compare
RR42_RS17060 -1.4 -10.5 histidine kinase compare
RR42_RS18385 -1.3 -2.1 hypothetical protein compare
RR42_RS35875 -1.3 -6.3 UDP-galactose-4-epimerase compare
RR42_RS02045 -1.3 -8.1 GTPase compare
RR42_RS08085 -1.3 -2.3 hypothetical protein compare
RR42_RS19750 -1.3 -1.4 MBL fold metallo-hydrolase compare
RR42_RS04700 -1.3 -1.3 ribonuclease G compare
RR42_RS19085 -1.3 -1.6 cytochrome C biogenesis protein ResB compare
RR42_RS13040 -1.3 -2.8 iron transporter compare
RR42_RS34815 -1.2 -3.1 diguanylate cyclase compare
RR42_RS26900 -1.2 -2.6 enoyl-CoA hydratase compare
RR42_RS20775 -1.2 -1.1 hypothetical protein compare
RR42_RS31285 -1.2 -1.9 XRE family transcriptional regulator compare
RR42_RS12615 -1.2 -1.9 LexA family transcriptional regulator compare
RR42_RS11795 -1.2 -3.2 PEP synthetase regulatory protein compare
RR42_RS33575 -1.2 -1.8 hypothetical protein compare
RR42_RS27550 -1.2 -1.1 hypothetical protein compare
RR42_RS00715 -1.2 -3.1 ferritin compare
RR42_RS01505 -1.1 -1.8 tRNA-Cys compare
RR42_RS08945 -1.1 -1.5 hypothetical protein compare
RR42_RS07605 -1.1 -4.9 poly-beta-hydroxybutyrate polymerase compare
RR42_RS31330 -1.1 -1.4 LysR family transcriptional regulator compare
RR42_RS33215 -1.1 -6.9 transferase compare
RR42_RS11770 -1.1 -1.1 cyclase compare
RR42_RS04895 -1.1 -6.3 serine/threonine protein phosphatase compare
RR42_RS05665 -1.1 -1.2 urease accessory protein UreJ compare
RR42_RS00790 -1.1 -5.5 chemotaxis protein CheY compare
RR42_RS01820 -1.1 -3.5 peptidase S41 compare
RR42_RS19045 -1.1 -1.2 frataxin compare
RR42_RS20925 -1.1 -2.4 Crp/Fnr family transcriptional regulator compare
RR42_RS12050 -1.1 -4.7 DNA polymerase compare
RR42_RS19735 -1.1 -3.4 hypothetical protein compare
RR42_RS22495 -1.1 -2.3 hypothetical protein compare
RR42_RS25785 -1.0 -2.0 TetR family transcriptional regulator compare
RR42_RS08365 -1.0 -5.3 hypothetical protein compare
RR42_RS07045 -1.0 -2.2 hypothetical protein compare
RR42_RS21595 -1.0 -2.7 IclR family transcriptional regulator compare
RR42_RS01260 -1.0 -5.0 lauroyl acyltransferase compare
RR42_RS08110 -1.0 -1.6 hypothetical protein compare
RR42_RS17390 -1.0 -3.5 ATP-dependent DNA helicase RecG compare
RR42_RS26450 -1.0 -3.3 histidinol dehydrogenase compare
RR42_RS30320 -1.0 -2.1 hypothetical protein compare
RR42_RS04280 -1.0 -3.3 aldehyde dehydrogenase compare
RR42_RS15525 -1.0 -0.9 hypothetical protein compare
RR42_RS30545 -1.0 -2.0 cobalt-precorrin-6Y C(5)-methyltransferase compare
RR42_RS22185 -1.0 -2.1 LysR family transcriptional regulator compare
RR42_RS19765 -1.0 -1.6 arsenate reductase compare
RR42_RS17730 -1.0 -2.1 hypothetical protein compare
RR42_RS10365 -1.0 -2.0 ABC transporter compare
RR42_RS15460 -1.0 -4.0 translocation protein TolB compare
RR42_RS32585 -1.0 -1.7 cytochrome C oxidase compare
RR42_RS05500 -1.0 -1.2 preprotein translocase subunit SecG compare
RR42_RS11220 -1.0 -3.3 peptide ABC transporter compare
RR42_RS21820 -1.0 -2.5 GntR family transcriptional regulator compare
RR42_RS35250 -1.0 -1.6 alpha/beta hydrolase compare
RR42_RS02345 -1.0 -2.0 carbon monoxide dehydrogenase compare
RR42_RS06875 -1.0 -1.5 hypothetical protein compare
RR42_RS31830 -0.9 -1.6 short-chain dehydrogenase compare
RR42_RS31850 -0.9 -2.2 2-keto-4-pentenoate hydratase compare
RR42_RS07380 -0.9 -3.0 dihydrolipoamide dehydrogenase compare
RR42_RS01255 -0.9 -5.4 lauroyl acyltransferase compare
RR42_RS04320 -0.9 -3.3 cell division protein FtsK compare
RR42_RS07185 -0.9 -3.2 hypothetical protein compare
RR42_RS19535 -0.9 -2.5 hypothetical protein compare
RR42_RS15475 -0.9 -4.0 protein tolQ compare
RR42_RS31530 -0.9 -2.2 histidine kinase compare
RR42_RS16930 -0.9 -1.8 sulfonate ABC transporter ATP-binding protein compare
RR42_RS18930 -0.9 -2.9 BolA family transcriptional regulator compare
RR42_RS01780 -0.9 -4.1 glutathione synthetase compare
RR42_RS18840 -0.9 -3.6 2-alkenal reductase compare
RR42_RS03895 -0.9 -2.1 paraquat-inducible protein A compare
RR42_RS18820 -0.9 -3.8 cytochrome B compare
RR42_RS31065 -0.9 -2.9 GntR family transcriptional regulator compare
RR42_RS23370 -0.9 -2.8 flagellar motor switch protein FliN compare
RR42_RS05420 -0.9 -4.2 membrane protein compare
RR42_RS00430 -0.9 -1.6 histidine kinase compare
RR42_RS03080 -0.9 -2.6 recombinase RecA compare
RR42_RS18380 -0.9 -2.3 hypothetical protein compare
RR42_RS08645 -0.9 -1.9 phage capsid scaffolding protein compare
RR42_RS19695 -0.9 -1.2 cytochrome C protein compare
RR42_RS15455 -0.8 -3.0 membrane protein compare
RR42_RS15000 -0.8 -1.7 GTP cyclohydrolase compare
RR42_RS29865 -0.8 -0.9 hypothetical protein compare
RR42_RS20570 -0.8 -1.7 biopolymer transporter ExbD compare
RR42_RS03560 -0.8 -1.6 hypothetical protein compare
RR42_RS26535 -0.8 -2.1 diguanylate cyclase compare
RR42_RS03530 -0.8 -1.0 hypothetical protein compare
RR42_RS09515 -0.8 -2.1 hypothetical protein compare
RR42_RS06925 -0.8 -1.2 hypothetical protein compare
RR42_RS21630 -0.8 -1.9 Asp/Glu racemase compare
RR42_RS32600 -0.8 -2.2 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS15465 -0.8 -2.2 TonB-dependent receptor compare
RR42_RS17595 -0.8 -1.7 hypothetical protein compare
RR42_RS26580 -0.8 -1.3 hypothetical protein compare
RR42_RS24040 -0.8 -2.6 hypothetical protein compare
RR42_RS22090 -0.8 -3.2 hypothetical protein compare
RR42_RS18815 -0.8 -2.5 cytochrome C compare
RR42_RS26920 -0.8 -3.1 TetR family transcriptional regulator compare
RR42_RS32590 -0.8 -1.1 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS19635 -0.8 -0.8 hypothetical protein compare
RR42_RS33195 -0.8 -5.2 UDP-sugar lipid carrier transferase compare
RR42_RS34935 -0.8 -1.5 cytochrome C oxidase subunit IV compare
RR42_RS13015 -0.8 -4.2 fatty acid hydroxylase compare
RR42_RS31900 -0.8 -1.6 short-chain dehydrogenase compare
RR42_RS23520 -0.8 -2.3 thioesterase compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in carbon source experiments

For carbon source L-Malic acid disodium salt monohydrate across organisms