Experiment set2IT071 for Burkholderia phytofirmans PsJN

Compare to:

L-Fucose carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS09500 -7.5 -5.2 glucose-6-phosphate isomerase compare
BPHYT_RS17400 -7.2 -7.1 anthranilate phosphoribosyltransferase compare
BPHYT_RS17680 -7.1 -4.0 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS14915 -7.0 -8.3 phosphoserine aminotransferase compare
BPHYT_RS17670 -6.8 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17395 -6.6 -1.9 anthranilate synthase subunit II compare
BPHYT_RS16270 -6.6 -4.8 phosphoglycerate kinase compare
BPHYT_RS33915 -6.5 -7.8 isopropylmalate isomerase compare
BPHYT_RS16245 -6.5 -6.3 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06555 -6.5 -9.9 ketol-acid reductoisomerase compare
BPHYT_RS13705 -6.3 -3.9 chorismate synthase compare
BPHYT_RS33880 -6.2 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS04370 -6.0 -1.7 glycosyl transferase compare
BPHYT_RS34250 -6.0 -9.5 ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) conserved
BPHYT_RS15915 -6.0 -10.8 ornithine carbamoyltransferase compare
BPHYT_RS33875 -5.9 -8.0 tryptophan synthase subunit alpha compare
BPHYT_RS06545 -5.9 -11.4 acetolactate synthase compare
BPHYT_RS33835 -5.9 -10.6 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS34220 -5.8 -3.0 L-fucono-1,5-lactonase (from data) compare
BPHYT_RS15920 -5.7 -11.5 argininosuccinate synthase compare
BPHYT_RS05225 -5.6 -7.7 phosphoenolpyruvate carboxylase compare
BPHYT_RS17685 -5.6 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS14845 -5.5 -3.5 cysteine synthase compare
BPHYT_RS09515 -5.4 -3.7 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14895 -5.4 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS14855 -5.4 -2.6 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS13220 -5.4 -6.3 phosphomethylpyrimidine synthase compare
BPHYT_RS17690 -5.3 -9.9 imidazole glycerol phosphate synthase compare
BPHYT_RS26965 -5.3 -1.5 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS08955 -5.3 -7.2 homoserine dehydrogenase compare
BPHYT_RS12985 -5.3 -3.0 amino acid acetyltransferase compare
BPHYT_RS01595 -5.3 -12.3 homoserine O-acetyltransferase compare
BPHYT_RS17390 -5.2 -11.9 anthranilate synthase subunit I compare
BPHYT_RS33865 -5.2 -9.3 tryptophan synthase alpha chain compare
BPHYT_RS02610 -5.2 -4.7 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS34225 -5.1 -8.5 L-fucose dehydrogenase (EC 1.1.1.122) (from data) conserved
BPHYT_RS34215 -5.1 -8.1 2-keto-3-deoxy-L-fuconate 4-dehydrogenase FucDH (from data) conserved
BPHYT_RS17855 -5.0 -16.1 glutamate synthase compare
BPHYT_RS17890 -5.0 -2.5 shikimate kinase compare
BPHYT_RS14190 -5.0 -9.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17885 -4.9 -6.8 3-dehydroquinate synthase compare
BPHYT_RS03150 -4.9 -10.1 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS12845 -4.9 -14.6 ATPase compare
BPHYT_RS10065 -4.9 -2.4 cytochrome C oxidase subunit I compare
BPHYT_RS16835 -4.8 -4.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS12055 -4.8 -16.7 phosphoenolpyruvate synthase compare
BPHYT_RS34230 -4.7 -8.3 L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS33900 -4.7 -11.9 3-isopropylmalate dehydrogenase compare
BPHYT_RS18320 -4.7 -8.7 orotate phosphoribosyltransferase compare
BPHYT_RS17715 -4.7 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS34210 -4.6 -9.4 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) (from data) conserved
BPHYT_RS14910 -4.6 -8.8 chorismate mutase compare
BPHYT_RS17380 -4.6 -7.7 ribulose-phosphate 3-epimerase compare
BPHYT_RS17405 -4.6 -1.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS06900 -4.6 -9.2 aspartate aminotransferase compare
BPHYT_RS08960 -4.6 -2.2 threonine synthase compare
BPHYT_RS17675 -4.5 -2.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16675 -4.4 -2.8 dihydroorotase compare
BPHYT_RS03640 -4.3 -4.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS03725 -4.3 -2.1 serine hydroxymethyltransferase compare
BPHYT_RS33920 -4.2 -7.6 type II citrate synthase compare
BPHYT_RS33840 -4.2 -6.1 amidophosphoribosyltransferase compare
BPHYT_RS34245 -4.2 -2.8 ABC transporter for L-rhamnose/L-fucose/xylitol, ATPase component (from data) compare
BPHYT_RS34240 -4.2 -4.0 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS02590 -4.2 -6.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS13605 -4.2 -1.2 tRNA-Pro compare
BPHYT_RS35885 -4.2 -4.2 hypothetical protein compare
BPHYT_RS08565 -4.1 -1.7 dihydroorotate dehydrogenase compare
BPHYT_RS01590 -4.1 -5.0 methionine biosynthesis protein MetW compare
BPHYT_RS33645 -4.0 -6.2 homoserine kinase compare
BPHYT_RS04285 -4.0 -2.7 rhamnosyltransferase compare
BPHYT_RS14195 -3.9 -3.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS06405 -3.8 -4.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS12530 -3.7 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33610 -3.6 -1.3 DNA polymerase I compare
BPHYT_RS16840 -3.6 -2.5 transketolase compare
BPHYT_RS04955 -3.6 -2.5 methionyl-tRNA synthetase compare
BPHYT_RS16255 -3.5 -4.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS28660 -3.5 -1.4 polyvinylalcohol dehydrogenase compare
BPHYT_RS03535 -3.5 -4.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS19785 -3.4 -1.8 chemotaxis protein CheY compare
BPHYT_RS26685 -3.4 -1.4 precorrin-8X methylmutase compare
BPHYT_RS17700 -3.4 -3.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS23840 -3.2 -3.2 methyltransferase compare
BPHYT_RS16905 -3.2 -4.4 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS19260 -3.2 -1.3 hypothetical protein compare
BPHYT_RS28705 -3.1 -1.7 IclR family transcriptional regulator compare
BPHYT_RS34235 -3.0 -2.9 putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS16340 -3.0 -6.4 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS12840 -2.9 -3.4 pyruvate dehydrogenase compare
BPHYT_RS04965 -2.9 -6.9 ATP-binding protein compare
BPHYT_RS03570 -2.9 -6.5 heat-inducible transcription repressor HrcA compare
BPHYT_RS15710 -2.8 -2.2 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS08245 -2.8 -4.3 anti-sigma factor compare
BPHYT_RS14900 -2.8 -2.5 prephenate dehydrogenase compare
BPHYT_RS11745 -2.8 -1.6 (2Fe-2S)-binding protein compare
BPHYT_RS04720 -2.8 -6.5 transcriptional regulator compare
BPHYT_RS34295 -2.8 -1.1 fimbrial protein compare
BPHYT_RS06175 -2.7 -3.7 LPS biosynthesis compare
BPHYT_RS06190 -2.7 -3.7 heptosyltransferase compare
BPHYT_RS15320 -2.7 -2.6 hypothetical protein compare
BPHYT_RS12465 -2.6 -4.3 inositol monophosphatase compare
BPHYT_RS26970 -2.6 -6.3 L-lactate dehydrogenase, LldF subunit (from data) compare
BPHYT_RS20665 -2.6 -1.0 LysR family transcriptional regulator compare
BPHYT_RS14865 -2.5 -2.9 UDP-glucose 6-dehydrogenase compare
BPHYT_RS04385 -2.5 -3.0 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS13200 -2.5 -2.3 molybdopterin binding oxidoreductase compare
BPHYT_RS17520 -2.4 -4.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS18340 -2.4 -2.3 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS10100 -2.3 -4.0 dihydroxy-acid dehydratase compare
BPHYT_RS00770 -2.3 -1.3 conjugal transfer protein TraC compare
BPHYT_RS08850 -2.3 -2.0 transcriptional regulator compare
BPHYT_RS06685 -2.3 -2.0 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS16975 -2.3 -6.6 shikimate 5-dehydrogenase compare
BPHYT_RS20790 -2.3 -2.2 TetR family transcriptional regulator compare
BPHYT_RS17920 -2.2 -1.5 protein CyaY compare
BPHYT_RS11310 -2.2 -1.5 LysR family transcriptional regulator compare
BPHYT_RS26300 -2.2 -1.8 ATP-dependent DNA ligase compare
BPHYT_RS18705 -2.1 -2.4 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS16250 -2.1 -1.2 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS04740 -2.1 -5.3 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS08765 -2.1 -1.1 ABC transporter ATP-binding protein compare
BPHYT_RS15670 -2.1 -3.4 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS06610 -2.1 -1.9 triosephosphate isomerase compare
BPHYT_RS34780 -2.1 -4.1 phytoene synthase compare
BPHYT_RS26975 -2.0 -1.1 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS35100 -2.0 -1.5 ABC transporter substrate-binding protein compare
BPHYT_RS33370 -2.0 -1.8 LysR family transcriptional regulator compare
BPHYT_RS25870 -1.9 -1.1 type III secretion system ATPase compare
BPHYT_RS05610 -1.9 -10.0 DNA-cytosine methyltransferase compare
BPHYT_RS16345 -1.8 -3.3 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS25210 -1.8 -1.0 drug:proton antiporter compare
BPHYT_RS06530 -1.8 -1.8 membrane protein compare
BPHYT_RS36400 -1.8 -1.5 hypothetical protein compare
BPHYT_RS17095 -1.8 -2.0 proline--tRNA ligase compare
BPHYT_RS06325 -1.7 -3.4 ATPase compare
BPHYT_RS05010 -1.7 -3.1 RpiR family transcriptional regulator compare
BPHYT_RS21335 -1.7 -1.9 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS02865 -1.7 -2.1 hypothetical protein compare
BPHYT_RS18660 -1.7 -2.5 hypothetical protein compare
BPHYT_RS15645 -1.6 -7.3 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS12150 -1.6 -7.6 PII uridylyl-transferase compare
BPHYT_RS06600 -1.6 -1.6 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS13645 -1.6 -9.4 threonine--tRNA ligase compare
BPHYT_RS04290 -1.5 -1.8 glycosyl transferase family 2 compare
BPHYT_RS06045 -1.5 -5.8 transaldolase compare
BPHYT_RS33615 -1.5 -2.2 decarboxylase compare
BPHYT_RS27100 -1.5 -4.3 RNase II stability modulator compare
BPHYT_RS23315 -1.5 -1.6 hypothetical protein compare
BPHYT_RS09160 -1.5 -2.1 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS18760 -1.5 -1.9 flagellar biosynthesis protein FliT compare
BPHYT_RS19905 -1.5 -1.7 membrane protein compare
BPHYT_RS04730 -1.5 -4.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS03755 -1.5 -2.1 pilus assembly protein PilE compare
BPHYT_RS02570 -1.5 -4.6 phosphocarrier protein HPr compare
BPHYT_RS30065 -1.5 -2.4 shikimate dehydrogenase compare
BPHYT_RS15620 -1.5 -3.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS07900 -1.5 -1.8 hypothetical protein compare
BPHYT_RS21055 -1.5 -2.3 S-formylglutathione hydrolase compare
BPHYT_RS14410 -1.4 -2.4 hypothetical protein compare
BPHYT_RS17900 -1.4 -1.9 hypothetical protein compare
BPHYT_RS06345 -1.4 -6.3 sensor histidine kinase compare
BPHYT_RS07325 -1.4 -0.9 GntR family transcriptional regulator compare
BPHYT_RS09690 -1.4 -1.3 phosphate starvation-inducible protein PsiF compare
BPHYT_RS12265 -1.4 -1.6 alanine acetyltransferase compare
BPHYT_RS15640 -1.4 -8.0 L-aspartate oxidase compare
BPHYT_RS32395 -1.4 -1.0 hypothetical protein compare
BPHYT_RS22360 -1.4 -2.6 response regulator receiver compare
BPHYT_RS31030 -1.4 -2.3 tyrosine protein kinase compare
BPHYT_RS05365 -1.4 -1.2 3-ketoacyl-ACP reductase compare
BPHYT_RS09145 -1.4 -6.2 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS12590 -1.3 -1.6 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS04725 -1.3 -4.9 sulfite reductase compare
BPHYT_RS06195 -1.3 -1.8 membrane protein compare
BPHYT_RS12815 -1.3 -4.3 IclR family transcriptional regulator compare
BPHYT_RS15650 -1.3 -6.7 quinolinate synthetase compare
BPHYT_RS08950 -1.3 -3.9 aminotransferase compare
BPHYT_RS34545 -1.3 -1.7 transcriptional regulator compare
BPHYT_RS02005 -1.3 -1.2 diguanylate phosphodiesterase compare
BPHYT_RS03645 -1.3 -2.3 tRNA dimethylallyltransferase compare
BPHYT_RS02955 -1.3 -3.3 formyltetrahydrofolate deformylase compare
BPHYT_RS12060 -1.3 -1.7 hypothetical protein compare
BPHYT_RS19730 -1.3 -3.5 L-arabonate dehydratase (EC 4.2.1.25) (from data) compare
BPHYT_RS34625 -1.3 -2.8 hypothetical protein compare
BPHYT_RS14660 -1.3 -1.6 hypothetical protein compare
BPHYT_RS11000 -1.3 -1.2 glutathione S-transferase compare
BPHYT_RS31060 -1.3 -1.2 capsular polysaccharide biosynthesis protein compare
BPHYT_RS24745 -1.3 -2.0 transcriptional regulator compare
BPHYT_RS04400 -1.3 -1.3 Crp/Fnr family transcriptional regulator compare
BPHYT_RS11285 -1.2 -1.5 LacI family transcription regulator compare
BPHYT_RS23570 -1.2 -4.8 chemotaxis protein CheY compare
BPHYT_RS09860 -1.2 -0.7 pilus assembly protein PilP compare
BPHYT_RS06550 -1.2 -1.9 acetolactate synthase compare
BPHYT_RS12535 -1.2 -1.0 membrane protein compare
BPHYT_RS21615 -1.2 -1.6 FMN-dependent NADH-azoreductase compare
BPHYT_RS36230 -1.2 -2.7 hypothetical protein compare
BPHYT_RS06075 -1.2 -5.4 hypothetical protein compare
BPHYT_RS08770 -1.2 -1.6 universal stress protein A compare
BPHYT_RS02650 -1.2 -1.2 membrane protein compare
BPHYT_RS29945 -1.2 -1.4 histidine kinase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Fucose in Burkholderia phytofirmans PsJN

For carbon source L-Fucose across organisms