Experiment set2IT070 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Arginine carbon source

200 most important genes:

  gene name fitness t score description  
AO356_21440 -6.0 -5.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_08635 -5.9 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
AO356_18735 -5.8 -4.0 arginine N-succinyltransferase compare
AO356_18710 -5.6 -10.8 L-Arginine ABC transporter, permease component 1 (from data) conserved
AO356_18720 -5.6 -8.5 AraC family transcriptional regulator compare
AO356_21415 -5.6 -10.7 3-isopropylmalate dehydrogenase compare
AO356_14435 -5.5 -5.4 anthranilate phosphoribosyltransferase compare
AO356_21405 -5.4 -5.3 3-isopropylmalate dehydratase compare
AO356_09815 -5.4 -5.3 imidazoleglycerol-phosphate dehydratase compare
AO356_14440 -5.4 -5.2 indole-3-glycerol-phosphate synthase compare
AO356_21400 -5.1 -7.0 isopropylmalate isomerase compare
AO356_18725 -5.1 -6.0 acetylornithine aminotransferase compare
AO356_10915 -5.1 -10.3 tryptophan synthase subunit beta compare
AO356_16175 -5.0 -6.0 acetolactate synthase 3 regulatory subunit compare
AO356_10910 -5.0 -9.0 tryptophan synthase subunit alpha compare
AO356_13410 -5.0 -11.6 homoserine O-acetyltransferase compare
AO356_14420 -4.9 -13.5 anthranilate synthase compare
AO356_21465 -4.9 -3.4 amidophosphoribosyltransferase compare
AO356_09810 -4.9 -4.7 imidazole glycerol phosphate synthase subunit HisH compare
AO356_18755 -4.9 -7.4 succinylglutamate desuccinylase compare
AO356_09525 -4.8 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_22200 -4.8 -8.0 sirohydrochlorin ferrochelatase compare
AO356_06965 -4.8 -8.6 histidinol dehydrogenase compare
AO356_18745 -4.7 -7.2 succinylarginine dihydrolase compare
AO356_18740 -4.7 -4.6 succinylglutamate-semialdehyde dehydrogenase compare
AO356_06970 -4.7 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_16180 -4.7 -14.2 ketol-acid reductoisomerase compare
AO356_13405 -4.7 -10.4 methionine biosynthesis protein MetW compare
AO356_09520 -4.7 -5.5 phosphoribosyl-AMP cyclohydrolase compare
AO356_13605 -4.5 -6.2 5,10-methylenetetrahydrofolate reductase compare
AO356_06550 -4.5 -13.2 2-isopropylmalate synthase compare
AO356_12520 -4.4 -3.1 orotate phosphoribosyltransferase compare
AO356_10345 -4.4 -7.3 RNA pyrophosphohydrolase compare
AO356_13250 -4.3 -11.2 dihydroxy-acid dehydratase compare
AO356_18705 -4.3 -9.2 L-Arginine ABC transporter, permease component 2 (from data) conserved
AO356_16170 -4.3 -10.8 acetolactate synthase 3 catalytic subunit compare
AO356_19085 -4.3 -8.7 phosphoribosylglycinamide formyltransferase compare
AO356_21470 -4.3 -8.2 O-succinylhomoserine sulfhydrylase compare
AO356_09540 -4.3 -2.9 twin-arginine protein translocation system subunit TatC compare
AO356_10075 -4.3 -7.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_00555 -4.3 -11.7 sulfite reductase compare
AO356_18730 -4.3 -10.6 arginine N-succinyltransferase compare
AO356_24705 -4.3 -12.8 NAD-glutamate dehydrogenase conserved
AO356_10340 -4.2 -15.1 phosphoserine phosphatase compare
AO356_21435 -4.2 -5.7 pseudouridine synthase compare
AO356_02175 -4.2 -10.8 transaldolase compare
AO356_02265 -4.2 -5.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_19090 -4.2 -4.0 phosphoribosylaminoimidazole synthetase compare
AO356_00560 -4.1 -2.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_09800 -4.1 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_18700 -4.0 -12.2 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) conserved
AO356_03095 -3.9 -8.7 protease HtpX compare
AO356_08735 -3.9 -14.4 phosphoserine phosphatase compare
AO356_19795 -3.9 -2.7 glycerol-3-phosphate dehydrogenase compare
AO356_01750 -3.8 -2.6 ATP-dependent Clp protease proteolytic subunit compare
AO356_01555 -3.8 -10.0 acyl-CoA dehydrogenase compare
AO356_16075 -3.7 -5.0 Fis family transcriptional regulator compare
AO356_19045 -3.7 -9.1 chemotaxis protein CheY compare
AO356_01745 -3.6 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_10350 -3.5 -14.1 phosphoenolpyruvate-protein phosphotransferase compare
AO356_09425 -3.5 -9.4 malate dehydrogenase compare
AO356_09795 -3.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
AO356_13685 -3.4 -5.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_18715 -3.4 -4.7 L-Arginine ABC transporter, ATPase component (from data) compare
AO356_12375 -3.4 -14.0 histidine kinase compare
AO356_00355 -3.4 -9.0 chemotaxis protein CheY compare
AO356_17070 -3.4 -2.3 cytochrome B compare
AO356_17520 -3.3 -2.2 phosphoribosylformylglycinamidine synthase compare
AO356_10300 -3.3 -4.4 3-phosphoglycerate dehydrogenase compare
AO356_15165 -3.3 -3.8 protein cII compare
AO356_24845 -3.2 -4.4 ATPase compare
AO356_11025 -3.1 -7.0 transcriptional regulator PhoU compare
AO356_17075 -3.1 -3.0 cytochrome C compare
AO356_20830 -3.1 -4.7 phosphoadenosine phosphosulfate reductase compare
AO356_07055 -3.0 -3.8 phosphocarrier protein HPr compare
AO356_06960 -3.0 -8.3 histidinol-phosphate aminotransferase compare
AO356_17065 -3.0 -2.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_11315 -3.0 -2.0 shikimate dehydrogenase compare
AO356_07915 -2.9 -3.5 exodeoxyribonuclease V subunit beta compare
AO356_12380 -2.9 -8.8 ATP-dependent DNA helicase RecG compare
AO356_00880 -2.8 -3.3 integration host factor subunit alpha compare
AO356_10000 -2.8 -6.8 hypothetical protein compare
AO356_16600 -2.7 -3.2 malate:quinone oxidoreductase compare
AO356_17035 -2.7 -7.5 ATPase compare
AO356_15815 -2.7 -2.3 gamma-glutamyl kinase compare
AO356_18025 -2.7 -3.6 ATP-dependent DNA helicase RuvB compare
AO356_27180 -2.6 -4.9 hypothetical protein compare
AO356_07480 -2.6 -3.0 carbamoyl phosphate synthase large subunit compare
AO356_27210 -2.6 -10.0 hypothetical protein compare
AO356_04560 -2.5 -3.0 serine peptidase compare
AO356_27230 -2.5 -6.6 hypothetical protein compare
AO356_12895 -2.4 -18.2 polyphosphate kinase compare
AO356_18020 -2.4 -4.3 ATP-dependent DNA helicase RuvA compare
AO356_07390 -2.4 -2.7 polyribonucleotide nucleotidyltransferase compare
AO356_06575 -2.3 -4.1 outer membrane protein assembly factor BamB compare
AO356_07195 -2.3 -6.3 GntR family transcriptional regulator compare
AO356_21330 -2.3 -10.2 aromatic amino acid aminotransferase compare
AO356_11450 -2.3 -2.8 cytochrome C compare
AO356_16670 -2.2 -12.5 adenylylsulfate kinase compare
AO356_27250 -2.2 -5.9 hypothetical protein compare
AO356_19425 -2.2 -2.9 lipid A biosynthesis lauroyl acyltransferase compare
AO356_27215 -2.2 -4.2 hypothetical protein compare
AO356_14295 -2.2 -2.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_27205 -2.2 -7.9 hypothetical protein compare
AO356_12780 -2.1 -7.1 argininosuccinate lyase compare
AO356_07005 -2.1 -1.8 ABC transporter ATP-binding protein compare
AO356_16080 -2.1 -9.7 ATPase compare
AO356_10005 -2.1 -9.5 branched-chain amino acid permease (azaleucine resistance) compare
AO356_16665 -2.0 -11.9 sulfate adenylyltransferase compare
AO356_16095 -2.0 -7.2 molecular chaperone DnaK compare
AO356_20175 -2.0 -2.8 3-oxoacyl-ACP synthase compare
AO356_02465 -1.9 -2.8 carbonate dehydratase compare
AO356_06990 -1.9 -5.2 toluene tolerance protein compare
AO356_14430 -1.9 -5.6 anthranilate synthase compare
AO356_05995 -1.9 -3.5 hypothetical protein compare
AO356_06690 -1.8 -3.4 queuine tRNA-ribosyltransferase compare
AO356_26360 -1.8 -1.7 enoyl-CoA hydratase compare
AO356_19060 -1.8 -12.8 (p)ppGpp synthetase compare
AO356_14135 -1.8 -11.4 biotin synthase compare
AO356_23815 -1.8 -6.7 amidase compare
AO356_23155 -1.8 -8.8 RpiR family transcriptional regulator compare
AO356_12725 -1.8 -4.9 recombinase XerC compare
AO356_10030 -1.8 -8.6 Agmatine deiminase (EC 3.5.3.12) (from data) conserved
AO356_02190 -1.8 -6.6 hypothetical protein compare
AO356_08065 -1.7 -9.5 copper-transporting ATPase compare
AO356_06385 -1.6 -3.7 recombinase XerD compare
AO356_18325 -1.6 -9.7 argininosuccinate synthase compare
AO356_06995 -1.6 -5.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_02580 -1.5 -4.4 GntR family transcriptional regulator compare
AO356_30345 -1.5 -5.1 IclR family transcriptional regulator compare
AO356_21260 -1.5 -1.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_17890 -1.5 -1.4 H-NS histone compare
AO356_07910 -1.5 -2.0 exodeoxyribonuclease V subunit alpha compare
AO356_14505 -1.5 -2.3 peptidase M23 compare
AO356_21275 -1.4 -2.3 peptidase compare
AO356_19050 -1.4 -2.6 cysteine synthase compare
AO356_17950 -1.4 -7.1 histidine kinase compare
AO356_12025 -1.4 -8.6 pyruvate carboxylase subunit B compare
AO356_11495 -1.3 -5.8 hypothetical protein compare
AO356_03180 -1.3 -4.3 CysB family transcriptional regulator compare
AO356_10720 -1.3 -7.6 succinate-semialdehyde dehydrogenase compare
AO356_04330 -1.3 -5.4 allophanate hydrolase compare
AO356_14400 -1.3 -4.3 polyamine ABC transporter permease compare
AO356_28675 -1.3 -2.0 glycosyl hydrolase compare
AO356_00605 -1.3 -3.3 TetR family transcriptional regulator compare
AO356_03715 -1.3 -7.3 chemotaxis protein CheA compare
AO356_03800 -1.2 -2.3 histidine kinase compare
AO356_11490 -1.2 -5.4 zinc ABC transporter ATP-binding protein conserved
AO356_27240 -1.2 -3.1 hypothetical protein compare
AO356_02315 -1.2 -3.2 DNA topoisomerase I compare
AO356_04325 -1.2 -2.6 allophanate hydrolase compare
AO356_17985 -1.2 -4.7 cold-shock protein compare
AO356_08235 -1.2 -6.2 histidine kinase compare
AO356_02460 -1.2 -2.1 hypothetical protein compare
AO356_07370 -1.2 -3.9 nicotinate-nucleotide pyrophosphorylase compare
AO356_10330 -1.2 -8.9 threonine dehydratase compare
AO356_19925 -1.2 -6.9 AsnC family transcriptional regulator compare
AO356_03810 -1.1 -3.5 anti-anti-sigma factor compare
AO356_08875 -1.1 -2.0 toluene tolerance protein compare
AO356_03435 -1.1 -2.6 integration host factor subunit beta compare
AO356_29855 -1.1 -1.4 hypothetical protein compare
AO356_08930 -1.1 -2.4 heptose kinase compare
AO356_19900 -1.1 -5.6 lysine transporter LysE compare
AO356_04335 -1.1 -5.0 hypothetical protein compare
AO356_16070 -1.1 -4.4 poly(A) polymerase compare
AO356_17220 -1.1 -2.0 hypothetical protein compare
AO356_15295 -1.1 -3.4 nicotinate-nucleotide adenylyltransferase compare
AO356_21125 -1.1 -3.5 cyclic peptide transporter compare
AO356_15325 -1.0 -2.4 hypothetical protein compare
AO356_11480 -1.0 -5.3 ABC transporter substrate-binding protein compare
AO356_16835 -1.0 -3.0 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO356_09640 -1.0 -3.4 histidine utilization repressor compare
AO356_08610 -1.0 -4.4 exoribonuclease R compare
AO356_10140 -1.0 -6.1 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_05670 -1.0 -2.3 recombinase RecA compare
AO356_03500 -1.0 -2.6 3-oxoacyl-ACP reductase compare
AO356_20875 -1.0 -4.8 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_03725 -0.9 -2.5 histidine kinase compare
AO356_21410 -0.9 -2.5 SAM-dependent methyltransferase compare
AO356_20880 -0.9 -1.5 3-methylitaconate isomerase compare
AO356_02440 -0.9 -4.5 cytochrome C oxidase Cbb3 compare
AO356_06170 -0.9 -3.3 hypothetical protein compare
AO356_12580 -0.9 -6.1 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
AO356_20180 -0.9 -4.0 4-amino-4-deoxychorismate lyase compare
AO356_02425 -0.9 -4.8 cytochrome C oxidase Cbb3 compare
AO356_14220 -0.8 -6.3 pyrroloquinoline quinone biosynthesis protein PqqF compare
AO356_24550 -0.8 -1.4 hypothetical protein compare
AO356_14395 -0.8 -6.3 polyamine ABC transporter substrate-binding protein compare
AO356_09895 -0.8 -4.4 ABC transporter for L-Lysine, ATPase component (from data) compare
AO356_04095 -0.8 -3.2 agmatinase compare
AO356_06005 -0.8 -2.7 zinc metallopeptidase RseP compare
AO356_07000 -0.8 -1.8 ABC transporter permease compare
AO356_17470 -0.8 -3.8 aminopeptidase compare
AO356_03285 -0.8 -1.8 hypothetical protein compare
AO356_02735 -0.8 -2.1 type III secretion regulator InvE compare
AO356_10185 -0.8 -4.4 glutamate--cysteine ligase compare
AO356_08660 -0.8 -3.9 tRNA dimethylallyltransferase compare
AO356_02205 -0.8 -2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_15420 -0.8 -3.8 hypothetical protein compare
AO356_04555 -0.8 -4.9 peptidase M48 compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source L-Arginine in Pseudomonas fluorescens FW300-N2C3

For carbon source L-Arginine across organisms