Experiment set2IT070 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

D-Mannose carbon source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS18945 +1.4 8.1 LacI family transcriptional regulator compare
CA265_RS01265 +1.4 7.7 GntR family transcriptional regulator compare
CA265_RS08555 +1.3 7.4 CoA transferase compare
CA265_RS08525 +1.2 9.6 IclR family transcriptional regulator compare
CA265_RS10740 +1.1 7.1 DNA-binding response regulator compare
CA265_RS23305 +1.1 2.0 hypothetical protein compare
CA265_RS08565 +1.1 4.0 oxidoreductase compare
CA265_RS15895 +1.0 2.9 hypothetical protein compare
CA265_RS20350 +1.0 5.3 gliding motility lipoprotein GldH compare
CA265_RS21000 +1.0 4.1 ribosome silencing factor compare
CA265_RS10745 +1.0 8.3 diguanylate cyclase compare
CA265_RS18780 +1.0 3.4 YicC family protein compare
CA265_RS21060 +1.0 4.1 hypothetical protein compare
CA265_RS14705 +1.0 7.2 hypothetical protein compare
CA265_RS15070 +1.0 6.8 hypothetical protein compare
CA265_RS12665 +0.9 1.9 cold-shock protein compare
CA265_RS18125 +0.9 4.9 gliding motility protein GldL compare
CA265_RS08550 +0.9 4.5 carnitine dehydratase compare
CA265_RS06585 +0.9 4.1 hypothetical protein compare
CA265_RS08535 +0.9 5.2 glycosylase compare
CA265_RS11610 +0.8 1.6 RNA-binding protein S4 compare
CA265_RS23145 +0.8 3.5 hypothetical protein compare
CA265_RS08570 +0.8 0.8 dehydratase compare
CA265_RS20585 +0.8 2.5 hypothetical protein compare
CA265_RS08560 +0.8 3.1 ABC transporter substrate-binding protein compare
CA265_RS21565 +0.8 1.1 cold-shock protein compare
CA265_RS18115 +0.8 4.8 gliding motility protein GldN compare
CA265_RS03295 +0.8 5.4 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS20320 +0.7 6.6 hypothetical protein compare
CA265_RS20315 +0.7 6.3 hypothetical protein compare
CA265_RS19945 +0.7 3.3 hypothetical protein compare
CA265_RS14550 +0.7 4.6 hypothetical protein compare
CA265_RS06770 +0.7 3.7 hypothetical protein compare
CA265_RS21870 +0.7 3.5 DNA-binding response regulator compare
CA265_RS22790 +0.7 4.8 hypothetical protein compare
CA265_RS03260 +0.7 5.1 multidrug ABC transporter ATP-binding protein compare
CA265_RS14935 +0.7 6.1 hypothetical protein compare
CA265_RS14940 +0.7 2.8 hypothetical protein compare
CA265_RS19940 +0.7 5.6 hypothetical protein compare
CA265_RS09320 +0.7 2.7 hypothetical protein compare
CA265_RS19740 +0.7 2.6 gliding motility lipoprotein GldD compare
CA265_RS23545 +0.7 1.2 NADH dehydrogenase subunit D compare
CA265_RS22690 +0.7 5.0 hypothetical protein compare
CA265_RS22450 +0.7 2.2 GntR family transcriptional regulator compare
CA265_RS23985 +0.7 4.2 gliding motility lipoprotein GldB compare
CA265_RS17720 +0.7 5.5 hypothetical protein compare
CA265_RS24170 +0.7 3.8 MFS transporter compare
CA265_RS23635 +0.6 4.9 gliding motility lipoprotein GldJ compare
CA265_RS18120 +0.6 5.3 gliding motility protein GldM compare
CA265_RS24720 +0.6 5.2 multidrug transporter compare
CA265_RS18130 +0.6 5.0 gliding motility-associated lipoprotein compare
CA265_RS09270 +0.6 1.8 hypothetical protein compare
CA265_RS10600 +0.6 2.7 RNA polymerase subunit sigma-24 compare
CA265_RS19140 +0.6 1.7 tRNA-Ile compare
CA265_RS19540 +0.6 4.8 tail-specific protease compare
CA265_RS08540 +0.6 4.3 glycoside hydrolase family 2 compare
CA265_RS09720 +0.6 4.3 transglycosylase compare
CA265_RS19645 +0.6 3.4 GNAT family N-acetyltransferase compare
CA265_RS19030 +0.6 3.6 hypothetical protein compare
CA265_RS22620 +0.6 1.1 hypothetical protein compare
CA265_RS16295 +0.6 4.7 LacI family transcriptional regulator compare
CA265_RS22800 +0.6 4.1 glycosyl transferase compare
CA265_RS04785 +0.6 3.2 hypothetical protein compare
CA265_RS10390 +0.6 1.2 hypothetical protein compare
CA265_RS16005 +0.6 3.0 hypothetical protein compare
CA265_RS11030 +0.6 1.1 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS23520 +0.6 4.1 phosphate ABC transporter substrate-binding protein compare
CA265_RS08670 +0.6 2.5 sulfatase compare
CA265_RS18805 +0.6 1.2 hypothetical protein compare
CA265_RS25030 +0.6 1.7 hypothetical protein compare
CA265_RS08545 +0.6 3.1 ABC transporter substrate-binding protein compare
CA265_RS18090 +0.6 5.1 gliding motility protein compare
CA265_RS15085 +0.6 3.3 hypothetical protein compare
CA265_RS06775 +0.6 3.0 competence protein TfoX compare
CA265_RS09195 +0.6 4.0 Fis family transcriptional regulator compare
CA265_RS19055 +0.6 2.5 nitronate monooxygenase compare
CA265_RS04680 +0.6 2.1 AraC family transcriptional regulator compare
CA265_RS00880 +0.6 4.0 hypothetical protein compare
CA265_RS22805 +0.6 3.4 glycosyl transferase compare
CA265_RS23510 +0.6 1.9 energy transducer TonB compare
CA265_RS14745 +0.5 3.5 biopolymer transporter ExbD compare
CA265_RS20205 +0.5 2.5 very short patch repair endonuclease compare
CA265_RS07610 +0.5 1.9 KTSC domain-containing protein compare
CA265_RS00605 +0.5 2.0 endonuclease III compare
CA265_RS01270 +0.5 3.7 hypothetical protein compare
CA265_RS17555 +0.5 3.6 hypothetical protein compare
CA265_RS17685 +0.5 2.4 hypothetical protein compare
CA265_RS23525 +0.5 3.9 hypothetical protein compare
CA265_RS14840 +0.5 3.7 DUF4835 domain-containing protein compare
CA265_RS23180 +0.5 2.1 peroxiredoxin compare
CA265_RS07925 +0.5 2.6 hypothetical protein compare
CA265_RS10470 +0.5 3.2 amidinotransferase compare
CA265_RS14770 +0.5 1.6 hypothetical protein compare
CA265_RS08635 +0.5 2.5 damage-inducible protein DinB compare
CA265_RS15115 +0.5 2.8 porin compare
CA265_RS16250 +0.5 3.2 secretory protein compare
CA265_RS01220 +0.5 0.9 hypothetical protein compare
CA265_RS15615 +0.5 2.2 malate dehydrogenase compare
CA265_RS18865 +0.5 1.9 hypothetical protein compare
CA265_RS22980 +0.5 1.5 hypothetical protein compare
CA265_RS09950 +0.5 1.9 hypothetical protein compare
CA265_RS24385 +0.5 1.3 GNAT family N-acetyltransferase compare
CA265_RS17695 +0.5 2.9 hypothetical protein compare
CA265_RS03015 +0.5 1.6 tRNA-specific adenosine deaminase compare
CA265_RS13225 +0.5 3.4 exonuclease compare
CA265_RS07550 +0.5 2.3 hypothetical protein compare
CA265_RS15865 +0.5 1.5 cupin compare
CA265_RS24995 +0.5 2.3 hypothetical protein compare
CA265_RS24575 +0.5 2.6 hypothetical protein compare
CA265_RS22310 +0.5 1.7 superoxide dismutase compare
CA265_RS18990 +0.5 4.3 cell surface protein SprA compare
CA265_RS04835 +0.5 2.8 dihydrodipicolinate synthetase compare
CA265_RS10040 +0.5 0.8 hypothetical protein compare
CA265_RS08530 +0.5 3.4 alpha-L-rhamnosidase compare
CA265_RS11670 +0.5 2.4 hypothetical protein compare
CA265_RS16010 +0.5 2.1 short-chain dehydrogenase compare
CA265_RS05835 +0.5 1.5 AraC family transcriptional regulator compare
CA265_RS21355 +0.5 1.5 hypothetical protein compare
CA265_RS15050 +0.5 1.9 lysine transporter LysE compare
CA265_RS13790 +0.5 1.4 L-rhamnose mutarotase compare
CA265_RS19445 +0.5 2.8 hypothetical protein compare
CA265_RS04990 +0.5 1.6 short chain dehydrogenase compare
CA265_RS08880 +0.5 3.0 chromate transporter compare
CA265_RS09050 +0.5 2.0 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS09335 +0.4 2.1 DUF4442 domain-containing protein compare
CA265_RS10430 +0.4 1.8 hypothetical protein compare
CA265_RS14375 +0.4 1.9 hypothetical protein compare
CA265_RS05350 +0.4 2.9 hypothetical protein compare
CA265_RS18790 +0.4 2.2 four helix bundle protein compare
CA265_RS05940 +0.4 1.4 hypothetical protein compare
CA265_RS23155 +0.4 2.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CA265_RS24800 +0.4 1.9 hypothetical protein compare
CA265_RS21470 +0.4 1.6 elongation factor P compare
CA265_RS25295 +0.4 2.9 DoxX family protein compare
CA265_RS12595 +0.4 2.0 RNA polymerase subunit sigma-24 compare
CA265_RS03665 +0.4 2.1 hypothetical protein compare
CA265_RS14440 +0.4 1.5 transcriptional regulator compare
CA265_RS21390 +0.4 2.0 metal-dependent hydrolase compare
CA265_RS13145 +0.4 1.3 hypothetical protein compare
CA265_RS10170 +0.4 2.1 hypothetical protein compare
CA265_RS16105 +0.4 1.3 hypothetical protein compare
CA265_RS14825 +0.4 0.8 outer membrane protein assembly factor BamD compare
CA265_RS07270 +0.4 3.1 phage tail protein compare
CA265_RS23640 +0.4 2.8 hypothetical protein compare
CA265_RS16325 +0.4 0.7 CsbD family protein compare
CA265_RS21915 +0.4 3.0 LacI family transcriptional regulator compare
CA265_RS09495 +0.4 2.7 magnesium and cobalt transport protein CorA compare
CA265_RS13660 +0.4 2.7 oxidoreductase compare
CA265_RS02555 +0.4 1.2 ATPase compare
CA265_RS20745 +0.4 2.1 conjugative transposon protein TraK compare
CA265_RS09355 +0.4 1.8 endonuclease V compare
CA265_RS03385 +0.4 1.6 hypothetical protein compare
CA265_RS16515 +0.4 0.7 hypothetical protein compare
CA265_RS24115 +0.4 2.3 hypothetical protein compare
CA265_RS22540 +0.4 1.9 hypothetical protein compare
CA265_RS07345 +0.4 2.4 HAD family hydrolase compare
CA265_RS04330 +0.4 1.4 transcriptional regulator compare
CA265_RS24815 +0.4 1.3 hypothetical protein compare
CA265_RS19765 +0.4 1.7 hypothetical protein compare
CA265_RS12600 +0.4 1.1 hypothetical protein compare
CA265_RS18455 +0.4 1.5 nucleotidyltransferase compare
CA265_RS19100 +0.4 1.3 damage-inducible protein DinB compare
CA265_RS21435 +0.4 1.4 hypothetical protein compare
CA265_RS10985 +0.4 2.8 hypothetical protein compare
CA265_RS23390 +0.4 1.4 alkyl hydroperoxide reductase compare
CA265_RS00300 +0.4 1.2 damage-inducible protein DinB compare
CA265_RS19650 +0.4 1.7 DNA-3-methyladenine glycosylase compare
CA265_RS21740 +0.4 1.8 RNA polymerase sigma factor compare
CA265_RS05135 +0.4 1.8 ferritin compare
CA265_RS02815 +0.4 2.7 hypothetical protein compare
CA265_RS03255 +0.4 2.4 glycerophosphodiester phosphodiesterase compare
CA265_RS17680 +0.4 1.5 hypothetical protein compare
CA265_RS06765 +0.4 2.2 hypothetical protein compare
CA265_RS16410 +0.4 2.1 hypothetical protein compare
CA265_RS14740 +0.4 1.9 biopolymer transporter ExbB compare
CA265_RS16070 +0.4 2.3 peptide-N-glycosidase compare
CA265_RS04755 +0.4 2.1 proline hydroxylase compare
CA265_RS14670 +0.4 2.6 hypothetical protein compare
CA265_RS09280 +0.4 2.3 diguanylate cyclase compare
CA265_RS17460 +0.4 1.6 RNA polymerase sigma-70 factor compare
CA265_RS23120 +0.4 1.1 hypothetical protein compare
CA265_RS18775 +0.4 1.8 hypothetical protein compare
CA265_RS05615 +0.4 2.1 hypothetical protein compare
CA265_RS23265 +0.4 1.4 iron-binding protein compare
CA265_RS03525 +0.4 1.0 hypothetical protein compare
CA265_RS02990 +0.4 2.0 mannosyltransferase compare
CA265_RS17560 +0.4 2.4 peptidylprolyl isomerase compare
CA265_RS22720 +0.4 1.0 hypothetical protein compare
CA265_RS00885 +0.4 1.9 hypothetical protein compare
CA265_RS13740 +0.4 2.4 cysteine synthase compare
CA265_RS20700 +0.4 1.1 plasmid transfer protein compare
CA265_RS23915 +0.4 1.7 G-D-S-L family lipolytic protein compare
CA265_RS05650 +0.4 1.9 hypothetical protein compare
CA265_RS19330 +0.4 1.9 dTDP-4-dehydrorhamnose reductase compare
CA265_RS13655 +0.4 2.4 hypothetical protein compare
CA265_RS03715 +0.4 0.8 hypothetical protein compare
CA265_RS01185 +0.4 1.4 hypothetical protein compare
CA265_RS02105 +0.4 1.7 hypothetical protein compare
CA265_RS06150 +0.4 1.7 hypothetical protein compare
CA265_RS04175 +0.4 1.3 phosphonate ABC transporter ATP-binding protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Mannose in Pedobacter sp. GW460-11-11-14-LB5

For carbon source D-Mannose across organisms