Experiment set2IT070 for Cupriavidus basilensis FW507-4G11

Compare to:

Ethanol carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -8.2 -5.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS18305 -6.5 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS14390 -6.3 -4.3 3-isopropylmalate dehydratase compare
RR42_RS14400 -6.2 -4.2 isopropylmalate isomerase compare
RR42_RS16275 -5.6 -3.8 membrane protein compare
RR42_RS12175 -5.5 -9.9 malate synthase compare
RR42_RS16250 -5.4 -7.4 sulfate adenylyltransferase compare
RR42_RS06485 -5.4 -8.2 chorismate synthase compare
RR42_RS34255 -5.3 -6.3 aldehyde dehydrogenase compare
RR42_RS14365 -5.1 -5.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS33255 -5.0 -4.8 protein-tyrosine phosphatase compare
RR42_RS01385 -5.0 -4.4 5,10-methylenetetrahydrofolate reductase compare
RR42_RS19005 -5.0 -4.9 3-dehydroquinate synthase compare
RR42_RS07555 -4.9 -3.3 potassium transporter Kup compare
RR42_RS14385 -4.7 -7.2 3-isopropylmalate dehydrogenase compare
RR42_RS18295 -4.7 -13.1 anthranilate synthase component I compare
RR42_RS01160 -4.6 -10.9 homoserine O-acetyltransferase compare
RR42_RS18300 -4.6 -6.1 anthranilate synthase subunit II compare
RR42_RS00875 -4.6 -16.3 isocitrate dehydrogenase compare
RR42_RS14320 -4.4 -6.0 O-succinylhomoserine sulfhydrylase compare
RR42_RS16245 -4.4 -7.3 uroporphyrin-III methyltransferase compare
RR42_RS07425 -4.4 -8.2 IclR family transcriptional regulator compare
RR42_RS05860 -4.4 -5.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS18855 -4.2 -2.9 preprotein translocase compare
RR42_RS16255 -4.1 -8.4 sulfate adenylyltransferase compare
RR42_RS04475 -4.0 -9.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS01290 -3.9 -6.3 thiamine biosynthesis protein ThiC compare
RR42_RS13880 -3.9 -11.9 AMP-dependent synthetase compare
RR42_RS16270 -3.9 -9.4 sulfite reductase compare
RR42_RS30655 -3.8 -8.6 LysR family transcriptional regulator compare
RR42_RS11795 -3.8 -3.7 PEP synthetase regulatory protein compare
RR42_RS30660 -3.7 -9.1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS33250 -3.7 -9.1 tyrosine protein kinase compare
RR42_RS02085 -3.6 -8.6 RNA polymerase subunit sigma-54 compare
RR42_RS33260 -3.6 -9.2 multidrug MFS transporter compare
RR42_RS20205 -3.5 -3.4 chromosome partitioning protein compare
RR42_RS16280 -3.4 -5.7 transcriptional regulator compare
RR42_RS33240 -3.4 -16.5 GDP-L-fucose synthase compare
RR42_RS18850 -3.3 -4.3 preprotein translocase subunit TatC compare
RR42_RS01845 -3.3 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS19010 -3.3 -6.7 shikimate kinase compare
RR42_RS18990 -3.1 -16.4 glutamate synthase compare
RR42_RS08575 -3.1 -1.9 tail protein compare
RR42_RS07605 -3.1 -7.8 poly-beta-hydroxybutyrate polymerase compare
RR42_RS16260 -3.0 -2.1 phosphoadenosine phosphosulfate reductase compare
RR42_RS04460 -3.0 -5.6 chorismate mutase compare
RR42_RS14360 -3.0 -1.7 tryptophan synthase subunit alpha compare
RR42_RS02705 -2.7 -3.1 Holliday junction DNA helicase RuvA compare
RR42_RS16240 -2.6 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS12040 -2.6 -12.8 MFS transporter compare
RR42_RS17645 -2.6 -7.0 shikimate dehydrogenase compare
RR42_RS03075 -2.6 -9.7 transcriptional regulator compare
RR42_RS26900 -2.5 -3.2 enoyl-CoA hydratase compare
RR42_RS33245 -2.5 -9.0 mannose-1-phosphate guanyltransferase compare
RR42_RS18985 -2.5 -5.3 glutamate synthase compare
RR42_RS19090 -2.3 -2.7 cytochrome C compare
RR42_RS17490 -2.3 -6.2 NADP transhydrogenase subunit alpha compare
RR42_RS33235 -2.3 -8.2 GDP-mannose 4,6-dehydratase compare
RR42_RS04535 -2.2 -6.0 cysteine synthase compare
RR42_RS33210 -2.1 -7.1 teichoic acid biosynthesis protein compare
RR42_RS22355 -2.1 -2.7 ModE family transcriptional regulator compare
RR42_RS03070 -2.1 -9.9 histidine kinase compare
RR42_RS23565 -2.1 -1.5 flagellar motor switch protein G compare
RR42_RS18140 -2.0 -2.1 MarR family transcriptional regulator compare
RR42_RS26905 -2.0 -8.3 methylcrotonoyl-CoA carboxylase compare
RR42_RS18815 -2.0 -7.1 cytochrome C compare
RR42_RS12550 -2.0 -5.7 hypothetical protein compare
RR42_RS17505 -2.0 -8.2 NAD synthetase compare
RR42_RS12015 -2.0 -3.7 dihydrolipoamide acyltransferase compare
RR42_RS04700 -1.9 -1.9 ribonuclease G compare
RR42_RS01720 -1.9 -2.1 membrane protein compare
RR42_RS12185 -1.9 -1.9 LysR family transcriptional regulator compare
RR42_RS24605 -1.9 -7.6 TetR family transcriptional regulator compare
RR42_RS12615 -1.9 -3.1 LexA family transcriptional regulator compare
RR42_RS31530 -1.9 -4.1 histidine kinase compare
RR42_RS04470 -1.8 -4.0 prephenate dehydrogenase compare
RR42_RS04015 -1.8 -2.0 RNA polymerase sigma factor compare
RR42_RS33650 -1.8 -3.3 IclR family transcriptional regulator compare
RR42_RS04895 -1.7 -10.2 serine/threonine protein phosphatase compare
RR42_RS34260 -1.7 -5.8 Alcohol dehydrogenase (EC 1.1.1.1) (from data) compare
RR42_RS17720 -1.6 -1.9 sugar kinase compare
RR42_RS17390 -1.6 -5.8 ATP-dependent DNA helicase RecG compare
RR42_RS13910 -1.6 -5.6 glutamate racemase compare
RR42_RS17060 -1.6 -12.0 histidine kinase compare
RR42_RS12860 -1.6 -2.2 pseudouridine synthase compare
RR42_RS01380 -1.6 -2.2 membrane protein compare
RR42_RS03065 -1.6 -5.9 membrane protein compare
RR42_RS19885 -1.6 -1.4 aminoglycoside transporter compare
RR42_RS07565 -1.6 -8.2 transcription accessory protein compare
RR42_RS16220 -1.5 -1.5 DNA polymerase III subunit chi compare
RR42_RS02150 -1.5 -2.4 membrane protein compare
RR42_RS03095 -1.5 -1.7 succinyl-CoA synthetase subunit beta compare
RR42_RS02045 -1.5 -8.1 GTPase compare
RR42_RS21040 -1.5 -1.2 hypothetical protein compare
RR42_RS18820 -1.4 -5.3 cytochrome B compare
RR42_RS13180 -1.4 -7.2 3'-5' exonuclease compare
RR42_RS20195 -1.4 -1.3 ATPase F0F1 compare
RR42_RS27570 -1.4 -1.8 murein hydrolase effector protein compare
RR42_RS15410 -1.4 -4.3 membrane protein compare
RR42_RS17565 -1.4 -8.1 LysR family transcriptional regulator compare
RR42_RS00380 -1.4 -5.4 GntR family transcriptional regulator compare
RR42_RS06095 -1.3 -3.7 hypothetical protein compare
RR42_RS27090 -1.3 -2.4 chemotaxis protein CheV compare
RR42_RS27120 -1.3 -1.3 amino acid ABC transporter permease compare
RR42_RS12545 -1.3 -8.1 aminotransferase compare
RR42_RS19445 -1.3 -4.8 TetR family transcriptional regulator compare
RR42_RS34650 -1.3 -4.2 LacI family transcriptional regulator compare
RR42_RS01775 -1.3 -5.4 glutamate--cysteine ligase compare
RR42_RS29095 -1.3 -3.4 XRE family transcriptional regulator compare
RR42_RS12925 -1.3 -1.8 ATPase compare
RR42_RS06875 -1.2 -2.1 hypothetical protein compare
RR42_RS18825 -1.2 -2.4 ubiquinol-cytochrome C reductase compare
RR42_RS13800 -1.2 -5.5 formyltetrahydrofolate deformylase compare
RR42_RS16765 -1.2 -2.1 glycerol kinase compare
RR42_RS11790 -1.2 -7.1 phosphoenolpyruvate synthase compare
RR42_RS14055 -1.2 -2.8 elongation factor 4 compare
RR42_RS17055 -1.2 -6.9 LuxR family transcriptional regulator compare
RR42_RS13875 -1.2 -9.4 sodium:solute symporter compare
RR42_RS06630 -1.2 -2.2 integration host factor subunit alpha compare
RR42_RS15475 -1.2 -5.4 protein tolQ compare
RR42_RS15895 -1.2 -4.5 uroporphyrinogen III methyltransferase compare
RR42_RS07620 -1.2 -3.6 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS18930 -1.2 -2.2 BolA family transcriptional regulator compare
RR42_RS08450 -1.1 -1.7 hypothetical protein compare
RR42_RS19895 -1.1 -1.5 elongation factor GreAB compare
RR42_RS26580 -1.1 -1.7 hypothetical protein compare
RR42_RS08210 -1.1 -1.2 hypothetical protein compare
RR42_RS25785 -1.1 -2.4 TetR family transcriptional regulator compare
RR42_RS31285 -1.1 -1.9 XRE family transcriptional regulator compare
RR42_RS16525 -1.1 -3.1 anti-sigma factor compare
RR42_RS15470 -1.1 -1.4 biopolymer transporter ExbD compare
RR42_RS17105 -1.1 -7.0 Clp protease ClpX compare
RR42_RS15415 -1.1 -1.9 membrane protein compare
RR42_RS01780 -1.1 -5.2 glutathione synthetase compare
RR42_RS07360 -1.1 -2.4 ATPase compare
RR42_RS17685 -1.1 -5.4 alkyl hydroperoxide reductase compare
RR42_RS34215 -1.0 -1.2 ferredoxin compare
RR42_RS31900 -1.0 -2.0 short-chain dehydrogenase compare
RR42_RS01920 -1.0 -2.5 protoheme IX farnesyltransferase compare
RR42_RS03080 -1.0 -2.1 recombinase RecA compare
RR42_RS21755 -1.0 -2.0 shikimate dehydrogenase compare
RR42_RS01820 -1.0 -4.4 peptidase S41 compare
RR42_RS08110 -1.0 -1.6 hypothetical protein compare
RR42_RS29865 -1.0 -1.9 hypothetical protein compare
RR42_RS34570 -1.0 -1.1 hypothetical protein compare
RR42_RS26935 -1.0 -2.7 farnesyl-diphosphate farnesyltransferase compare
RR42_RS02775 -1.0 -1.3 molecular chaperone SurA compare
RR42_RS29525 -1.0 -2.2 hypothetical protein compare
RR42_RS17050 -1.0 -3.4 phosphoribosylglycinamide formyltransferase compare
RR42_RS15890 -1.0 -4.6 heme biosynthesis protein HemY compare
RR42_RS04765 -0.9 -2.1 3-oxoacyl-ACP reductase compare
RR42_RS26895 -0.9 -3.8 3-methylcrotonyl-CoA carboxylase compare
RR42_RS02785 -0.9 -2.5 dimethyladenosine transferase compare
RR42_RS21720 -0.9 -2.0 acetoin catabolism protein X compare
RR42_RS01875 -0.9 -4.0 cytochrome C oxidase subunit II compare
RR42_RS07235 -0.9 -1.5 hypothetical protein compare
RR42_RS30640 -0.9 -3.2 DNA mismatch repair protein MutT compare
RR42_RS16950 -0.9 -3.5 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS14965 -0.9 -1.9 hypothetical protein compare
RR42_RS09300 -0.9 -1.3 aromatic ring-opening dioxygenase LigB compare
RR42_RS05955 -0.9 -1.1 hypothetical protein compare
RR42_RS18270 -0.9 -2.6 murein transglycosylase compare
RR42_RS18310 -0.9 -0.7 indole-3-glycerol-phosphate synthase compare
RR42_RS01785 -0.9 -2.3 PTS fructose transporter subunit IIA compare
RR42_RS00955 -0.9 -3.1 hydroxymethylglutaryl-CoA lyase compare
RR42_RS14585 -0.9 -2.6 L-PSP family endoribonuclease compare
RR42_RS01435 -0.9 -1.6 short-chain dehydrogenase compare
RR42_RS12180 -0.9 -1.9 haloacid dehalogenase compare
RR42_RS35965 -0.9 -2.6 hypothetical protein compare
RR42_RS11225 -0.9 -2.1 peptide ABC transporter permease compare
RR42_RS02250 -0.9 -2.4 GntR family transcriptional regulator compare
RR42_RS02950 -0.9 -2.1 malonate decarboxylase subunit beta compare
RR42_RS34520 -0.9 -0.8 transposase compare
RR42_RS06570 -0.9 -2.7 3-hydroxybutyrate dehydrogenase compare
RR42_RS31330 -0.9 -1.2 LysR family transcriptional regulator compare
RR42_RS23730 -0.9 -2.0 phenylacetate-CoA oxygenase subunit PaaB compare
RR42_RS19065 -0.9 -5.1 transcriptional regulator compare
RR42_RS17735 -0.9 -3.5 hypothetical protein compare
RR42_RS15460 -0.9 -3.2 translocation protein TolB compare
RR42_RS15090 -0.8 -3.5 DNA helicase compare
RR42_RS08630 -0.8 -1.2 head completion/stabilization protein compare
RR42_RS11770 -0.8 -1.4 cyclase compare
RR42_RS01255 -0.8 -4.9 lauroyl acyltransferase compare
RR42_RS08085 -0.8 -2.2 hypothetical protein compare
RR42_RS09630 -0.8 -1.6 hypothetical protein compare
RR42_RS22495 -0.8 -1.1 hypothetical protein compare
RR42_RS04880 -0.8 -4.4 coproporphyrinogen III oxidase compare
RR42_RS02440 -0.8 -1.0 membrane protein compare
RR42_RS14355 -0.8 -3.2 DNA methylase N-4 compare
RR42_RS06635 -0.8 -2.6 MerR family transcriptional regulator compare
RR42_RS31790 -0.8 -1.3 nitrite reductase compare
RR42_RS14495 -0.8 -3.7 hypothetical protein compare
RR42_RS33355 -0.8 -2.8 membrane protein compare
RR42_RS21820 -0.8 -2.5 GntR family transcriptional regulator compare
RR42_RS08260 -0.8 -1.2 hypothetical protein compare
RR42_RS23355 -0.8 -1.2 flagellar biosynthetic protein FliQ compare
RR42_RS01795 -0.8 -5.7 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS12305 -0.8 -1.0 hypothetical protein compare
RR42_RS13655 -0.8 -2.4 glyoxalase compare
RR42_RS07060 -0.8 -2.3 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Ethanol in Cupriavidus basilensis FW507-4G11

For carbon source Ethanol across organisms