Experiment set2IT070 for Cupriavidus basilensis FW507-4G11

Compare to:

Ethanol carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS06020 +1.4 1.9 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS08185 +1.3 2.7 hypothetical protein compare
RR42_RS20810 +1.2 1.8 hypothetical protein compare
RR42_RS35725 +1.2 2.7 flagellar biosynthesis protein FlgB compare
RR42_RS13685 +1.2 3.7 cupin compare
RR42_RS09060 +1.2 3.4 glucose-6-phosphate isomerase compare
RR42_RS20370 +1.2 1.8 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS21470 +1.1 1.3 hypothetical protein compare
RR42_RS32960 +1.0 1.5 2-dehydropantoate 2-reductase compare
RR42_RS13730 +1.0 3.0 TetR family transcriptional regulator compare
RR42_RS17665 +1.0 3.0 chorismate lyase compare
RR42_RS19485 +1.0 1.4 general secretion pathway protein GspH compare
RR42_RS13305 +1.0 2.0 hypothetical protein compare
RR42_RS30765 +1.0 1.4 tRNA-Arg compare
RR42_RS21850 +1.0 2.5 3-oxoadipate enol-lactonase compare
RR42_RS16360 +0.9 1.7 transposase compare
RR42_RS10855 +0.9 1.3 diguanylate phosphodiesterase compare
RR42_RS27470 +0.9 1.5 peroxiredoxin OsmC compare
RR42_RS16495 +0.9 2.1 branched-chain amino acid aminotransferase compare
RR42_RS24550 +0.9 1.3 hypothetical protein compare
RR42_RS20005 +0.9 3.1 hypothetical protein compare
RR42_RS32775 +0.9 2.9 hypothetical protein compare
RR42_RS14220 +0.9 2.2 ferredoxin-NADP reductase compare
RR42_RS29505 +0.8 2.9 hypothetical protein compare
RR42_RS12880 +0.8 2.1 membrane protein compare
RR42_RS09555 +0.8 1.7 universal stress protein UspA compare
RR42_RS23460 +0.8 1.1 alpha/beta hydrolase compare
RR42_RS19685 +0.8 2.3 thiosulfate oxidation carrier complex protein SoxZ compare
RR42_RS25510 +0.8 0.9 short-chain dehydrogenase compare
RR42_RS19860 +0.8 1.3 tartronate semialdehyde reductase compare
RR42_RS08860 +0.8 2.1 radical SAM protein compare
RR42_RS24010 +0.8 1.5 hypothetical protein compare
RR42_RS00345 +0.8 1.0 LysR family transcriptional regulator compare
RR42_RS16640 +0.8 1.7 LysR family transcriptional regulator compare
RR42_RS14880 +0.8 2.7 hypothetical protein compare
RR42_RS33690 +0.8 1.7 phosphate acetyltransferase compare
RR42_RS08245 +0.8 1.4 hypothetical protein compare
RR42_RS27095 +0.7 1.2 hypothetical protein compare
RR42_RS30285 +0.7 2.2 amidohydrolase compare
RR42_RS13850 +0.7 2.2 hypothetical protein compare
RR42_RS33040 +0.7 2.1 hypothetical protein compare
RR42_RS36770 +0.7 3.7 hypothetical protein compare
RR42_RS10290 +0.7 2.8 hypothetical protein compare
RR42_RS32975 +0.7 1.5 LysR family transcriptional regulator compare
RR42_RS04810 +0.7 1.6 glycine/betaine ABC transporter permease compare
RR42_RS15985 +0.7 2.7 formate dehydrogenase compare
RR42_RS03035 +0.7 0.8 membrane protein compare
RR42_RS26740 +0.7 1.4 protein serine/threonine phosphatase compare
RR42_RS23305 +0.7 1.1 hypothetical protein compare
RR42_RS19760 +0.7 2.5 hypothetical protein compare
RR42_RS22940 +0.7 1.6 TetR family transcriptional regulator compare
RR42_RS04770 +0.7 1.2 methylglyoxal synthase compare
RR42_RS05620 +0.7 1.3 esterase compare
RR42_RS35780 +0.7 1.0 chemotaxis protein CheY compare
RR42_RS13420 +0.7 1.6 phosphohistidine phosphatase compare
RR42_RS06085 +0.7 2.8 peptidase compare
RR42_RS23140 +0.7 0.7 peptidylprolyl isomerase compare
RR42_RS37455 +0.7 1.5 hypothetical protein compare
RR42_RS06830 +0.6 2.1 hypothetical protein compare
RR42_RS21605 +0.6 1.1 S-adenosylhomocysteine hydrolase compare
RR42_RS30410 +0.6 1.7 hypothetical protein compare
RR42_RS04125 +0.6 2.2 lipoprotein compare
RR42_RS10245 +0.6 1.4 dehydratase compare
RR42_RS08330 +0.6 1.0 hypothetical protein compare
RR42_RS06860 +0.6 1.3 hypothetical protein compare
RR42_RS08470 +0.6 1.1 hypothetical protein compare
RR42_RS11465 +0.6 2.5 pyrroloquinoline quinone biosynthesis protein PqqC compare
RR42_RS27520 +0.6 1.5 hypothetical protein compare
RR42_RS09075 +0.6 3.0 amino acid dehydrogenase compare
RR42_RS14860 +0.6 1.7 hypothetical protein compare
RR42_RS17805 +0.6 0.7 hypothetical protein compare
RR42_RS12370 +0.6 2.2 trans-aconitate methyltransferase compare
RR42_RS02545 +0.6 1.4 nitrate ABC transporter ATP-binding protein compare
RR42_RS08220 +0.6 1.2 hypothetical protein compare
RR42_RS02850 +0.6 1.8 phoH-like protein compare
RR42_RS20710 +0.6 2.5 AraC family transcriptional regulator compare
RR42_RS12240 +0.6 0.9 hypothetical protein compare
RR42_RS23395 +0.6 3.2 LysR family transcriptional regulator compare
RR42_RS09310 +0.6 1.4 IclR family transcriptional regulator compare
RR42_RS31020 +0.6 1.7 hypothetical protein compare
RR42_RS36560 +0.6 3.0 ABC transporter substrate-binding protein compare
RR42_RS21365 +0.6 2.3 ABC transporter ATP-binding protein compare
RR42_RS07245 +0.6 1.1 hypothetical protein compare
RR42_RS10440 +0.6 1.8 heat-shock protein compare
RR42_RS23110 +0.6 1.1 isochorismatase compare
RR42_RS06445 +0.6 1.4 NAD(P)H-quinone oxidoreductase compare
RR42_RS00960 +0.6 1.8 prolyl-tRNA synthetase compare
RR42_RS02930 +0.6 1.2 AsnC family transcriptional regulator compare
RR42_RS10280 +0.6 1.7 hypothetical protein compare
RR42_RS08635 +0.6 2.6 terminase compare
RR42_RS28270 +0.6 2.3 TetR family transcriptional regulator compare
RR42_RS17495 +0.5 1.5 hypothetical protein compare
RR42_RS05750 +0.5 0.9 fructose 2,6-bisphosphatase compare
RR42_RS05260 +0.5 2.4 purine permease compare
RR42_RS15185 +0.5 2.2 LysR family transcriptional regulator compare
RR42_RS20360 +0.5 1.3 AsnC family transcriptional regulator compare
RR42_RS19525 +0.5 1.7 general secretion pathway protein GspE compare
RR42_RS23675 +0.5 2.6 hypothetical protein compare
RR42_RS01695 +0.5 3.7 C4-dicarboxylate transporter compare
RR42_RS15640 +0.5 0.7 hypothetical protein compare
RR42_RS32515 +0.5 1.9 taurine dioxygenase compare
RR42_RS36815 +0.5 1.8 ferredoxin compare
RR42_RS25650 +0.5 0.9 hypothetical protein compare
RR42_RS09570 +0.5 2.0 hypothetical protein compare
RR42_RS11460 +0.5 3.0 pyrroloquinoline quinone biosynthesis protein PqqB compare
RR42_RS28195 +0.5 1.6 SAM-dependent methyltransferase compare
RR42_RS28580 +0.5 2.4 LysR family transcriptional regulator compare
RR42_RS09575 +0.5 2.0 hypothetical protein compare
RR42_RS34305 +0.5 1.6 glutamine ABC transporter ATP-binding protein compare
RR42_RS36530 +0.5 2.3 hypothetical protein compare
RR42_RS05895 +0.5 0.9 rhombosortase compare
RR42_RS32710 +0.5 1.1 hypothetical protein compare
RR42_RS18325 +0.5 1.6 acylphosphatase compare
RR42_RS18610 +0.5 2.0 hypothetical protein compare
RR42_RS10490 +0.5 1.3 DNA-binding protein compare
RR42_RS23765 +0.5 2.2 tRNA-Gly compare
RR42_RS33855 +0.5 2.2 TetR family transcriptional regulator compare
RR42_RS10565 +0.5 2.0 alpha/beta hydrolase compare
RR42_RS14175 +0.5 2.9 molybdenum cofactor biosynthesis protein MoaA compare
RR42_RS23250 +0.5 1.2 glyoxalase compare
RR42_RS07650 +0.5 2.8 hypothetical protein compare
RR42_RS29000 +0.5 2.7 Crp/Fnr family transcriptional regulator compare
RR42_RS07920 +0.5 0.9 cyclophilin-like superfamily protein compare
RR42_RS36610 +0.5 1.3 host specificity protein compare
RR42_RS05780 +0.5 1.9 hypothetical protein compare
RR42_RS00895 +0.5 3.1 acyl-CoA dehydrogenase compare
RR42_RS20045 +0.5 1.0 hypothetical protein compare
RR42_RS34450 +0.5 2.1 glycosyl transferase compare
RR42_RS10110 +0.5 2.1 phosphonate ABC transporter substrate-binding protein compare
RR42_RS30965 +0.5 1.4 hypothetical protein compare
RR42_RS30445 +0.5 2.4 cation:proton antiporter compare
RR42_RS24820 +0.5 1.5 hypothetical protein compare
RR42_RS07130 +0.5 0.7 hypothetical protein compare
RR42_RS17015 +0.5 2.4 nicotinate-nucleotide pyrophosphorylase compare
RR42_RS24520 +0.5 1.4 hypothetical protein compare
RR42_RS24915 +0.5 1.6 hypothetical protein compare
RR42_RS15275 +0.5 1.8 ankyrin compare
RR42_RS35600 +0.5 1.1 hypothetical protein compare
RR42_RS20095 +0.5 1.9 peroxiredoxin compare
RR42_RS09240 +0.5 0.7 MFS transporter compare
RR42_RS17830 +0.5 2.8 ABC transporter substrate-binding protein compare
RR42_RS17355 +0.5 0.5 hypothetical protein compare
RR42_RS14405 +0.5 1.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
RR42_RS24955 +0.5 2.2 LysR family transcriptional regulator compare
RR42_RS32800 +0.5 2.2 nucleotidyltransferase compare
RR42_RS05155 +0.5 2.5 hydroxyacid dehydrogenase compare
RR42_RS04495 +0.5 1.5 integration host factor subunit beta compare
RR42_RS22380 +0.5 2.4 hypothetical protein compare
RR42_RS00840 +0.5 1.3 short-chain dehydrogenase compare
RR42_RS32310 +0.5 3.0 toxin YhaV compare
RR42_RS21505 +0.5 0.5 hypothetical protein compare
RR42_RS00420 +0.5 2.5 hypothetical protein compare
RR42_RS28090 +0.5 1.1 carbon-phosphorus lyase compare
RR42_RS34325 +0.5 2.2 hypothetical protein compare
RR42_RS05045 +0.5 1.7 hypothetical protein compare
RR42_RS26355 +0.5 1.4 multidrug MFS transporter compare
RR42_RS15955 +0.5 1.5 superoxide dismutase compare
RR42_RS10865 +0.5 2.4 LysR family transcriptional regulator compare
RR42_RS21310 +0.5 1.9 hypothetical protein compare
RR42_RS03980 +0.5 1.4 Fis family transcriptional regulator compare
RR42_RS24785 +0.5 2.1 NAD-dependent dehydratase compare
RR42_RS05085 +0.5 1.6 2-aminomuconate deaminase compare
RR42_RS34280 +0.5 1.6 hypothetical protein compare
RR42_RS17375 +0.5 0.8 hypothetical protein compare
RR42_RS33515 +0.5 2.2 hypothetical protein compare
RR42_RS26950 +0.5 1.5 bacterioferritin compare
RR42_RS27215 +0.5 1.5 LysR family transcriptional regulator compare
RR42_RS26050 +0.5 1.2 hypothetical protein compare
RR42_RS17165 +0.5 1.8 hypothetical protein compare
RR42_RS27910 +0.5 1.2 Crp/Fnr family transcriptional regulator compare
RR42_RS31750 +0.5 1.9 IclR family transcriptional regulator compare
RR42_RS09290 +0.5 0.8 hypothetical protein compare
RR42_RS37245 +0.5 1.8 MazF family transcriptional regulator compare
RR42_RS28425 +0.5 1.1 3-hydroxybutyryl-CoA dehydratase compare
RR42_RS35790 +0.5 2.4 chemotaxis protein CheD compare
RR42_RS10085 +0.5 3.2 acetoacetyl-CoA synthase compare
RR42_RS00525 +0.5 0.9 MarR family transcriptional regulator compare
RR42_RS27115 +0.5 1.6 amino acid ABC transporter ATP-binding protein compare
RR42_RS06505 +0.5 2.4 hypothetical protein compare
RR42_RS36395 +0.5 2.2 acyl-CoA dehydrogenase compare
RR42_RS00785 +0.5 2.0 LuxR family transcriptional regulator compare
RR42_RS23555 +0.5 2.6 ATP synthase compare
RR42_RS25615 +0.5 1.8 TetR family transcriptional regulator compare
RR42_RS14235 +0.4 0.7 hypothetical protein compare
RR42_RS29230 +0.4 3.0 TetR family transcriptional regulator compare
RR42_RS16905 +0.4 1.5 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
RR42_RS24180 +0.4 2.1 3-isopropylmalate dehydratase compare
RR42_RS31940 +0.4 1.3 2-nitropropane dioxygenase compare
RR42_RS15270 +0.4 2.8 gamma-glutamyl cyclotransferase compare
RR42_RS12425 +0.4 1.4 3-hydroxy-3-methylglutaryl-CoA lyase compare
RR42_RS09565 +0.4 1.3 hypothetical protein compare
RR42_RS04275 +0.4 1.2 hypothetical protein compare
RR42_RS12295 +0.4 2.4 ABC transporter permease compare
RR42_RS17850 +0.4 1.2 thioredoxin compare
RR42_RS34175 +0.4 1.7 enoyl-CoA hydratase compare
RR42_RS04820 +0.4 1.5 choline ABC transporter permease compare
RR42_RS35770 +0.4 2.1 flagellar biosynthesis protein FlhB compare
RR42_RS19555 +0.4 0.8 hypothetical protein compare
RR42_RS06470 +0.4 1.4 hypothetical protein compare
RR42_RS28085 +0.4 1.0 alkylphosphonate utilization protein PhnG compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Ethanol in Cupriavidus basilensis FW507-4G11

For carbon source Ethanol across organisms