Experiment set2IT070 for Burkholderia phytofirmans PsJN

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14865 -7.9 -4.4 UDP-glucose 6-dehydrogenase compare
BPHYT_RS02610 -7.8 -5.4 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16835 -7.2 -5.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS09500 -7.2 -7.0 glucose-6-phosphate isomerase compare
BPHYT_RS17395 -6.7 -2.2 anthranilate synthase subunit II compare
BPHYT_RS05225 -6.6 -11.8 phosphoenolpyruvate carboxylase compare
BPHYT_RS13705 -6.5 -4.5 chorismate synthase compare
BPHYT_RS06555 -6.5 -10.4 ketol-acid reductoisomerase compare
BPHYT_RS08955 -6.3 -4.4 homoserine dehydrogenase compare
BPHYT_RS14915 -6.2 -6.9 phosphoserine aminotransferase compare
BPHYT_RS33835 -6.2 -10.3 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS15915 -6.2 -9.5 ornithine carbamoyltransferase compare
BPHYT_RS15920 -5.7 -11.3 argininosuccinate synthase compare
BPHYT_RS14845 -5.7 -3.9 cysteine synthase compare
BPHYT_RS33865 -5.7 -9.4 tryptophan synthase alpha chain compare
BPHYT_RS14895 -5.6 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS06545 -5.6 -12.9 acetolactate synthase compare
BPHYT_RS04955 -5.6 -2.6 methionyl-tRNA synthetase compare
BPHYT_RS12985 -5.4 -3.5 amino acid acetyltransferase compare
BPHYT_RS33875 -5.4 -11.4 tryptophan synthase subunit alpha compare
BPHYT_RS04385 -5.3 -3.7 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS17890 -5.2 -2.9 shikimate kinase compare
BPHYT_RS08850 -5.2 -3.3 transcriptional regulator compare
BPHYT_RS16245 -5.2 -7.3 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS08245 -5.2 -5.4 anti-sigma factor compare
BPHYT_RS14910 -5.1 -8.3 chorismate mutase compare
BPHYT_RS16270 -5.0 -3.3 phosphoglycerate kinase compare
BPHYT_RS06175 -5.0 -7.6 LPS biosynthesis compare
BPHYT_RS33645 -5.0 -5.9 homoserine kinase compare
BPHYT_RS17685 -5.0 -8.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS06190 -4.9 -4.3 heptosyltransferase compare
BPHYT_RS17390 -4.9 -11.7 anthranilate synthase subunit I compare
BPHYT_RS01590 -4.9 -6.1 methionine biosynthesis protein MetW compare
BPHYT_RS04370 -4.9 -2.2 glycosyl transferase compare
BPHYT_RS17855 -4.8 -19.1 glutamate synthase compare
BPHYT_RS04290 -4.8 -3.1 glycosyl transferase family 2 compare
BPHYT_RS17380 -4.8 -13.6 ribulose-phosphate 3-epimerase compare
BPHYT_RS17670 -4.7 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS18320 -4.7 -15.8 orotate phosphoribosyltransferase compare
BPHYT_RS08960 -4.7 -2.6 threonine synthase compare
BPHYT_RS17400 -4.7 -7.8 anthranilate phosphoribosyltransferase compare
BPHYT_RS01595 -4.7 -10.5 homoserine O-acetyltransferase compare
BPHYT_RS33880 -4.7 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS06900 -4.7 -6.6 aspartate aminotransferase compare
BPHYT_RS33840 -4.7 -8.4 amidophosphoribosyltransferase compare
BPHYT_RS14855 -4.6 -3.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS16675 -4.6 -3.1 dihydroorotase compare
BPHYT_RS06610 -4.6 -2.1 triosephosphate isomerase compare
BPHYT_RS15710 -4.5 -3.4 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS32825 -4.5 -6.3 Xylose isomerase (EC 5.3.1.5) (from data) conserved
BPHYT_RS19785 -4.5 -2.1 chemotaxis protein CheY compare
BPHYT_RS17690 -4.5 -11.3 imidazole glycerol phosphate synthase compare
BPHYT_RS18340 -4.5 -2.8 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS16080 -4.4 -9.1 xylulokinase compare
BPHYT_RS17675 -4.4 -3.2 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS12530 -4.4 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS12845 -4.4 -18.7 ATPase compare
BPHYT_RS17680 -4.4 -4.0 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS33915 -4.4 -8.8 isopropylmalate isomerase compare
BPHYT_RS03640 -4.4 -4.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS03150 -4.4 -13.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS02590 -4.4 -8.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS33900 -4.3 -12.1 3-isopropylmalate dehydrogenase compare
BPHYT_RS33920 -4.2 -8.6 type II citrate synthase compare
BPHYT_RS06405 -4.1 -7.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS17885 -4.1 -6.4 3-dehydroquinate synthase compare
BPHYT_RS09515 -4.1 -6.2 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14190 -4.0 -8.3 carbamoyl phosphate synthase large subunit compare
BPHYT_RS23840 -3.8 -4.3 methyltransferase compare
BPHYT_RS16255 -3.7 -5.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16905 -3.5 -4.4 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS08565 -3.5 -2.3 dihydroorotate dehydrogenase compare
BPHYT_RS03725 -3.5 -2.6 serine hydroxymethyltransferase compare
BPHYT_RS06045 -3.5 -8.8 transaldolase compare
BPHYT_RS17405 -3.5 -1.6 indole-3-glycerol phosphate synthase compare
BPHYT_RS04285 -3.4 -3.0 rhamnosyltransferase compare
BPHYT_RS16840 -3.4 -3.3 transketolase compare
BPHYT_RS17715 -3.4 -5.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS10100 -3.4 -4.2 dihydroxy-acid dehydratase compare
BPHYT_RS16735 -3.4 -5.0 phosphogluconate dehydratase compare
BPHYT_RS12840 -3.3 -5.9 pyruvate dehydrogenase compare
BPHYT_RS17700 -3.2 -3.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS03535 -3.1 -6.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS16340 -3.1 -8.0 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS03570 -3.1 -7.3 heat-inducible transcription repressor HrcA compare
BPHYT_RS06685 -2.9 -3.8 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS16345 -2.8 -4.2 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS15650 -2.8 -11.6 quinolinate synthetase compare
BPHYT_RS12815 -2.6 -9.5 IclR family transcriptional regulator compare
BPHYT_RS16975 -2.5 -4.3 shikimate 5-dehydrogenase compare
BPHYT_RS15645 -2.5 -8.9 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS27100 -2.5 -10.2 RNase II stability modulator compare
BPHYT_RS04965 -2.4 -7.7 ATP-binding protein compare
BPHYT_RS13605 -2.4 -1.3 tRNA-Pro compare
BPHYT_RS15670 -2.3 -7.5 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS13470 -2.3 -1.2 arylsulfate sulfotransferase compare
BPHYT_RS03625 -2.2 -9.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS12535 -2.2 -1.7 membrane protein compare
BPHYT_RS03645 -2.2 -1.7 tRNA dimethylallyltransferase compare
BPHYT_RS27030 -2.1 -2.2 transcriptional regulator compare
BPHYT_RS11310 -2.1 -1.8 LysR family transcriptional regulator compare
BPHYT_RS15640 -2.1 -12.5 L-aspartate oxidase compare
BPHYT_RS32830 -2.0 -1.9 AraC family transcriptional regulator compare
BPHYT_RS06195 -2.0 -2.1 membrane protein compare
BPHYT_RS09650 -1.9 -2.0 hypothetical protein compare
BPHYT_RS05020 -1.9 -5.5 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS14900 -1.8 -2.7 prephenate dehydrogenase compare
BPHYT_RS09160 -1.8 -4.0 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS17865 -1.8 -6.8 membrane protein compare
BPHYT_RS35885 -1.7 -5.1 hypothetical protein compare
BPHYT_RS13200 -1.7 -2.2 molybdopterin binding oxidoreductase compare
BPHYT_RS14195 -1.7 -1.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS04720 -1.6 -5.4 transcriptional regulator compare
BPHYT_RS10270 -1.6 -3.6 D-amino acid dehydrogenase compare
BPHYT_RS08525 -1.6 -1.3 SAM-dependent methyltransferase compare
BPHYT_RS21860 -1.6 -1.3 hypothetical protein compare
BPHYT_RS08950 -1.5 -4.6 aminotransferase compare
BPHYT_RS03015 -1.5 -1.0 aldolase compare
BPHYT_RS28705 -1.5 -1.7 IclR family transcriptional regulator compare
BPHYT_RS07050 -1.5 -1.4 membrane protein compare
BPHYT_RS12465 -1.5 -2.5 inositol monophosphatase compare
BPHYT_RS12150 -1.5 -7.6 PII uridylyl-transferase compare
BPHYT_RS26470 -1.5 -1.7 MFS transporter compare
BPHYT_RS17520 -1.5 -5.0 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS08355 -1.5 -2.0 hypothetical protein compare
BPHYT_RS06325 -1.4 -6.2 ATPase compare
BPHYT_RS12055 -1.4 -9.8 phosphoenolpyruvate synthase compare
BPHYT_RS12925 -1.4 -1.3 exodeoxyribonuclease III compare
BPHYT_RS13645 -1.4 -9.4 threonine--tRNA ligase compare
BPHYT_RS29085 -1.4 -2.2 LysR family transcriptional regulator compare
BPHYT_RS27410 -1.4 -2.8 amidohydrolase compare
BPHYT_RS09315 -1.4 -1.1 chemotaxis protein CheY compare
BPHYT_RS06375 -1.3 -4.3 ribonuclease compare
BPHYT_RS16265 -1.3 -3.5 hypothetical protein compare
BPHYT_RS01485 -1.3 -0.9 histidine kinase compare
BPHYT_RS14400 -1.3 -2.5 anti-sigma factor compare
BPHYT_RS18705 -1.3 -1.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS11285 -1.3 -2.3 LacI family transcription regulator compare
BPHYT_RS24500 -1.2 -1.8 histidine kinase compare
BPHYT_RS31815 -1.2 -3.9 hypothetical protein compare
BPHYT_RS18280 -1.2 -5.5 TetR family transcriptional regulator compare
BPHYT_RS32260 -1.2 -1.6 hypothetical protein compare
BPHYT_RS12510 -1.2 -2.3 RNA-binding protein compare
BPHYT_RS33950 -1.2 -6.6 GntR family transcriptional regulator compare
BPHYT_RS06600 -1.2 -1.6 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS27175 -1.2 -0.9 DNA-binding protein compare
BPHYT_RS05010 -1.2 -4.2 RpiR family transcriptional regulator compare
BPHYT_RS04095 -1.2 -1.3 SAM-dependent methyltransferase PhcB compare
BPHYT_RS16985 -1.2 -4.9 esterase compare
BPHYT_RS28870 -1.2 -2.3 MarR family transcriptional regulator compare
BPHYT_RS29945 -1.2 -2.2 histidine kinase compare
BPHYT_RS02885 -1.2 -6.2 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS20845 -1.1 -1.0 peroxidase compare
BPHYT_RS02135 -1.1 -2.6 glyoxylate reductase compare
BPHYT_RS17725 -1.1 -3.7 BolA family transcriptional regulator compare
BPHYT_RS32155 -1.1 -4.2 type IV secretion system protein VirB11 compare
BPHYT_RS09145 -1.1 -6.2 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS32395 -1.1 -1.0 hypothetical protein compare
BPHYT_RS34085 -1.1 -1.4 polyamine ABC transporter permease compare
BPHYT_RS13130 -1.1 -1.5 metallophosphatase compare
BPHYT_RS20725 -1.1 -1.1 histidine kinase compare
BPHYT_RS31150 -1.1 -2.5 transcriptional regulator compare
BPHYT_RS24745 -1.1 -3.1 transcriptional regulator compare
BPHYT_RS27060 -1.1 -1.5 photosystem reaction center subunit H compare
BPHYT_RS11270 -1.1 -3.4 hypothetical protein compare
BPHYT_RS10135 -1.0 -1.1 hypothetical protein compare
BPHYT_RS03620 -1.0 -5.3 poly(A) polymerase compare
BPHYT_RS11755 -1.0 -1.5 spermidine/putrescine ABC transporter substrate-binding protein compare
BPHYT_RS04725 -1.0 -4.2 sulfite reductase compare
BPHYT_RS25870 -1.0 -0.9 type III secretion system ATPase compare
BPHYT_RS12285 -1.0 -4.6 isocitrate lyase compare
BPHYT_RS22695 -1.0 -6.2 TetR family transcriptional regulator compare
BPHYT_RS20425 -1.0 -1.5 hypothetical protein compare
BPHYT_RS17095 -1.0 -1.6 proline--tRNA ligase compare
BPHYT_RS29840 -1.0 -1.5 polysaccharide biosynthesis protein compare
BPHYT_RS16250 -1.0 -0.9 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS18760 -1.0 -2.2 flagellar biosynthesis protein FliT compare
BPHYT_RS03495 -1.0 -2.5 hypothetical protein compare
BPHYT_RS34235 -1.0 -1.7 putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS06530 -1.0 -1.4 membrane protein compare
BPHYT_RS01975 -1.0 -1.5 hypothetical protein compare
BPHYT_RS34900 -0.9 -1.4 hypothetical protein compare
BPHYT_RS09310 -0.9 -2.4 sensor histidine kinase compare
BPHYT_RS26305 -0.9 -2.8 exonuclease compare
BPHYT_RS10280 -0.9 -4.1 ornithine cyclodeaminase compare
BPHYT_RS22260 -0.9 -1.4 hypothetical protein compare
BPHYT_RS23460 -0.9 -0.8 AraC family transcriptional regulator compare
BPHYT_RS02570 -0.9 -4.0 phosphocarrier protein HPr compare
BPHYT_RS26385 -0.9 -1.9 glutamine amidotransferase compare
BPHYT_RS27640 -0.9 -1.6 acetoacetyl-CoA reductase compare
BPHYT_RS10185 -0.9 -2.5 MarR family transcriptional regulator compare
BPHYT_RS25285 -0.9 -1.5 AraC family transcriptional regulator compare
BPHYT_RS27495 -0.9 -1.0 hypothetical protein compare
BPHYT_RS30285 -0.9 -2.1 succinate-semialdehyde dehydrogenase compare
BPHYT_RS30490 -0.9 -0.6 2-haloalkanoic acid dehalogenase compare
BPHYT_RS07515 -0.9 -1.3 photosystem reaction center subunit H compare
BPHYT_RS15305 -0.9 -4.4 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS22930 -0.9 -1.3 type II secretion system protein compare
BPHYT_RS28470 -0.9 -1.3 hypothetical protein compare
BPHYT_RS10065 -0.9 -1.2 cytochrome C oxidase subunit I compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Xylose in Burkholderia phytofirmans PsJN

For carbon source D-Xylose across organisms