Experiment set2IT070 for Burkholderia phytofirmans PsJN

Compare to:

D-Xylose carbon source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS18825 +2.1 9.7 flagellar biosynthesis protein FliP compare
BPHYT_RS18835 +2.1 3.5 flagellar biosynthesis protein FliR compare
BPHYT_RS18935 +2.0 14.0 flagellar biosynthesis regulator FlhF compare
BPHYT_RS18900 +2.0 16.6 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS18895 +1.9 6.9 flagellar basal body rod protein FlgB compare
BPHYT_RS18785 +1.9 4.7 flagellar assembly protein FliH compare
BPHYT_RS18860 +1.9 11.1 flagellar P-ring protein FlgI compare
BPHYT_RS18830 +1.9 11.8 flagellar biosynthesis protein FliQ compare
BPHYT_RS18790 +1.9 10.6 ATP synthase compare
BPHYT_RS18795 +1.9 7.9 flagellar export protein FliJ compare
BPHYT_RS18775 +1.8 13.8 flagellar M-ring protein FliF compare
BPHYT_RS18780 +1.8 11.7 flagellar motor switch protein FliG compare
BPHYT_RS18945 +1.8 10.5 flagellar biosynthesis protein FlhB compare
BPHYT_RS18890 +1.8 9.4 flagellar basal body rod protein FlgC compare
BPHYT_RS18940 +1.8 11.1 flagellar biosynthesis protein FlhA compare
BPHYT_RS18925 +1.7 13.1 RNA polymerase sigma70 compare
BPHYT_RS18880 +1.7 12.7 flagellar hook protein FlgE compare
BPHYT_RS14655 +1.7 12.6 Fis family transcriptional regulator compare
BPHYT_RS16085 +1.7 6.9 DeoR faimly transcriptional regulator compare
BPHYT_RS18800 +1.6 11.3 flagellar hook-length control protein compare
BPHYT_RS18870 +1.6 7.9 flagellar basal body rod protein FlgG compare
BPHYT_RS18875 +1.6 8.5 flagellar basal body rod protein FlgF compare
BPHYT_RS14250 +1.5 9.4 glycosyl transferase compare
BPHYT_RS18810 +1.5 6.5 flagellar motor switch protein FliM compare
BPHYT_RS08415 +1.4 3.1 hypothetical protein compare
BPHYT_RS35215 +1.4 1.6 dehydrogenase compare
BPHYT_RS16065 +1.4 1.4 LacI family transcriptional regulator compare
BPHYT_RS04055 +1.4 6.2 PST family polysaccharide export protein compare
BPHYT_RS08235 +1.4 2.0 nucleoprotein, Hfg, host factor I compare
BPHYT_RS18885 +1.4 4.4 flagellar basal body rod modification protein FlgD compare
BPHYT_RS30945 +1.4 4.1 LacI family transcriptional regulator compare
BPHYT_RS08490 +1.4 4.8 Crp/Fnr family transcriptional regulator compare
BPHYT_RS03975 +1.3 5.5 AraC family transcriptional regulator compare
BPHYT_RS14255 +1.3 11.3 ABC transporter compare
BPHYT_RS04005 +1.3 3.4 GDP-L-fucose synthase compare
BPHYT_RS02575 +1.3 7.5 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS03980 +1.3 8.8 mannose-1-phosphate guanyltransferase compare
BPHYT_RS25980 +1.2 1.6 urea carboxylase compare
BPHYT_RS07425 +1.2 1.6 hypothetical protein compare
BPHYT_RS04010 +1.2 2.0 glycosyl transferase compare
BPHYT_RS13080 +1.2 2.1 hypothetical protein compare
BPHYT_RS29855 +1.2 1.5 protein-tyrosine-phosphatase compare
BPHYT_RS08030 +1.2 3.9 transposase compare
BPHYT_RS34430 +1.2 1.3 2-keto-4-pentenoate hydratase compare
BPHYT_RS04140 +1.1 4.1 polysaccharide biosynthesis protein compare
BPHYT_RS04035 +1.1 5.0 transferase compare
BPHYT_RS32210 +1.1 0.7 hypothetical protein compare
BPHYT_RS18855 +1.1 6.7 flagellar rod assembly protein FlgJ compare
BPHYT_RS18420 +1.1 2.3 hypothetical protein compare
BPHYT_RS01625 +1.1 4.1 chemotaxis protein CheY compare
BPHYT_RS04050 +1.1 5.9 group 1 glycosyl transferase compare
BPHYT_RS08190 +1.1 1.6 type II secretion system protein compare
BPHYT_RS22320 +1.0 3.1 hypothetical protein compare
BPHYT_RS04000 +1.0 5.3 GDP-mannose 4,6-dehydratase compare
BPHYT_RS03990 +1.0 4.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS04045 +1.0 5.7 acyltransferase compare
BPHYT_RS04015 +1.0 2.6 glycosyl transferase compare
BPHYT_RS11400 +1.0 1.3 hypothetical protein compare
BPHYT_RS04040 +1.0 4.2 hypothetical protein compare
BPHYT_RS11050 +1.0 1.9 molecular chaperone compare
BPHYT_RS16950 +1.0 3.3 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data) compare
BPHYT_RS24010 +1.0 2.4 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS02410 +1.0 3.6 alpha/beta hydrolase compare
BPHYT_RS10305 +1.0 2.0 hypothetical protein compare
BPHYT_RS01985 +1.0 2.5 hypothetical protein compare
BPHYT_RS18805 +0.9 2.3 flagellar basal body protein FliL compare
BPHYT_RS29515 +0.9 4.1 spermidine/putrescine ABC transporter substrate-binding protein compare
BPHYT_RS09735 +0.9 1.9 glycosyl transferase compare
BPHYT_RS31205 +0.9 1.8 peptide ABC transporter ATP-binding protein compare
BPHYT_RS34770 +0.9 5.4 chemotaxis protein compare
BPHYT_RS29510 +0.9 4.8 deoxyuridine 5`-triphosphate nucleotidohydrolase compare
BPHYT_RS06105 +0.9 1.3 hypothetical protein compare
BPHYT_RS30265 +0.9 1.2 hypothetical protein compare
BPHYT_RS31840 +0.9 1.8 anhydrase compare
BPHYT_RS25135 +0.9 2.3 hypothetical protein compare
BPHYT_RS05895 +0.9 1.5 hypothetical protein compare
BPHYT_RS05235 +0.9 1.3 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS33965 +0.9 1.1 methylcitrate synthase compare
BPHYT_RS01395 +0.8 3.2 tRNA-Arg compare
BPHYT_RS21130 +0.8 1.8 F420-dependent oxidoreductase compare
BPHYT_RS02660 +0.8 1.1 membrane protein compare
BPHYT_RS25450 +0.8 1.2 membrane protein compare
BPHYT_RS27330 +0.8 1.4 hypothetical protein compare
BPHYT_RS16090 +0.8 1.3 hypothetical protein compare
BPHYT_RS03985 +0.8 3.9 undecaprenyl-phosphate glucose phosphotransferase compare
BPHYT_RS35770 +0.8 0.9 glyoxalase compare
BPHYT_RS16135 +0.8 3.8 ABC transporter ATP-binding protein compare
BPHYT_RS09815 +0.8 1.7 malate synthase compare
BPHYT_RS27505 +0.8 1.7 hypothetical protein compare
BPHYT_RS06725 +0.8 2.1 MaoC family dehydratase compare
BPHYT_RS10465 +0.8 4.1 hypothetical protein compare
BPHYT_RS10475 +0.8 1.3 mammalian cell entry protein compare
BPHYT_RS21160 +0.8 2.0 NAD(P) transhydrogenase subunit beta compare
BPHYT_RS27345 +0.8 1.9 aldehyde dehydrogenase compare
BPHYT_RS02770 +0.8 3.8 membrane protein compare
BPHYT_RS25210 +0.8 1.0 drug:proton antiporter compare
BPHYT_RS03995 +0.8 3.4 protein tyrosine kinase compare
BPHYT_RS07570 +0.8 1.0 hypothetical protein compare
BPHYT_RS35560 +0.8 2.0 endoribonuclease L-PSP compare
BPHYT_RS28535 +0.8 0.9 response regulator receiver compare
BPHYT_RS34330 +0.8 5.6 hypothetical protein compare
BPHYT_RS10690 +0.8 2.5 Rieske (2Fe-2S) protein compare
BPHYT_RS18265 +0.8 1.6 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS04890 +0.8 1.1 cobalamin biosynthesis protein CobD compare
BPHYT_RS29620 +0.8 0.9 hypothetical protein compare
BPHYT_RS18865 +0.7 1.6 flagellar L-ring protein FlgH compare
BPHYT_RS33255 +0.7 4.1 ABC transporter substrate-binding protein compare
BPHYT_RS17765 +0.7 3.4 toluene ABC transporter ATP-binding protein compare
BPHYT_RS21725 +0.7 1.3 taurine ABC transporter substrate-binding protein compare
BPHYT_RS18970 +0.7 4.7 chemotaxis protein compare
BPHYT_RS06350 +0.7 1.3 chemotaxis protein CheY compare
BPHYT_RS01170 +0.7 1.3 hypothetical protein compare
BPHYT_RS02100 +0.7 1.2 AsnC family transcriptional regulator compare
BPHYT_RS02010 +0.7 0.8 copper homeostasis protein CutC compare
BPHYT_RS08715 +0.7 1.8 adenylyl-sulfate kinase compare
BPHYT_RS20905 +0.7 1.2 hypothetical protein compare
BPHYT_RS11555 +0.7 2.2 allantoinase compare
BPHYT_RS22540 +0.7 1.2 metal ABC transporter permease compare
BPHYT_RS01920 +0.7 4.6 AsnC family transcriptional regulator compare
BPHYT_RS31630 +0.7 2.6 hypothetical protein compare
BPHYT_RS26265 +0.7 2.5 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS15075 +0.7 1.1 dihydrokaempferol 4-reductase compare
BPHYT_RS22470 +0.7 1.1 hydrolase compare
BPHYT_RS06070 +0.7 3.5 cytochrome C compare
BPHYT_RS23570 +0.7 3.5 chemotaxis protein CheY compare
BPHYT_RS34135 +0.7 2.3 glutathione S-transferase compare
BPHYT_RS36285 +0.7 4.8 hypothetical protein compare
BPHYT_RS04125 +0.7 4.9 hypothetical protein compare
BPHYT_RS25470 +0.7 0.9 alkylhydroperoxidase compare
BPHYT_RS00955 +0.7 1.8 DNA polymerase compare
BPHYT_RS13420 +0.7 2.8 hypothetical protein compare
BPHYT_RS28995 +0.7 2.5 histidine kinase compare
BPHYT_RS15775 +0.7 2.1 peptide ABC transporter permease compare
BPHYT_RS10440 +0.7 2.7 GntR family transcriptional regulator compare
BPHYT_RS21470 +0.7 1.7 6-hydroxynicotinate reductase compare
BPHYT_RS25590 +0.7 2.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS29065 +0.7 2.5 hypothetical protein compare
BPHYT_RS30425 +0.7 1.1 LysR family transcriptional regulator compare
BPHYT_RS29605 +0.7 1.3 hypothetical protein compare
BPHYT_RS28325 +0.7 1.2 NADPH-dependent FMN reductase compare
BPHYT_RS30210 +0.7 1.6 GCN5 family acetyltransferase compare
BPHYT_RS07390 +0.7 1.4 transmembrane protein compare
BPHYT_RS32860 +0.7 0.8 hypothetical protein compare
BPHYT_RS36540 +0.7 2.1 hypothetical protein compare
BPHYT_RS25815 +0.7 1.1 deoxyribose-phosphate aldolase compare
BPHYT_RS06085 +0.7 3.6 ferredoxin compare
BPHYT_RS00115 +0.7 1.4 acetaldehyde dehydrogenase compare
BPHYT_RS27105 +0.7 2.9 enoyl-CoA hydratase compare
BPHYT_RS26570 +0.7 0.8 5'-nucleotidase compare
BPHYT_RS23185 +0.7 2.4 MFS transporter compare
BPHYT_RS05190 +0.7 2.1 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS26950 +0.7 2.3 MFS transporter compare
BPHYT_RS30450 +0.7 0.7 ABC transporter permease compare
BPHYT_RS32240 +0.7 1.1 chromosome replication initiation inhibitor protein compare
BPHYT_RS04340 +0.7 2.2 hypothetical protein compare
BPHYT_RS30780 +0.6 1.6 GMC family oxidoreductase compare
BPHYT_RS14150 +0.6 1.9 transposase compare
BPHYT_RS34460 +0.6 2.7 glutamate/aspartate transporter permease GltK compare
BPHYT_RS17410 +0.6 3.8 adenylate cyclase compare
BPHYT_RS32915 +0.6 2.9 LysR family transcriptional regulator compare
BPHYT_RS09480 +0.6 1.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS09495 +0.6 1.4 ABC transporter ATP-binding protein compare
BPHYT_RS04400 +0.6 1.1 Crp/Fnr family transcriptional regulator compare
BPHYT_RS04120 +0.6 2.7 protein tyrosine kinase compare
BPHYT_RS02760 +0.6 1.9 cytochrome BD oxidase subunit II compare
BPHYT_RS35565 +0.6 1.2 activator of HSP90 ATPase compare
BPHYT_RS04560 +0.6 1.5 Hcp1 family type VI secretion system effector compare
BPHYT_RS03030 +0.6 2.7 cytochrome C compare
BPHYT_RS35355 +0.6 1.7 amidohydrolase compare
BPHYT_RS14340 +0.6 4.6 Fis family transcriptional regulator compare
BPHYT_RS20150 +0.6 1.1 glycosyl transferase family 1 compare
BPHYT_RS36400 +0.6 1.0 hypothetical protein compare
BPHYT_RS35585 +0.6 1.9 hypothetical protein compare
BPHYT_RS27800 +0.6 1.3 esterase compare
BPHYT_RS17755 +0.6 2.5 ABC transporter substrate-binding protein compare
BPHYT_RS28740 +0.6 1.9 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS25640 +0.6 1.6 MFS transporter compare
BPHYT_RS07925 +0.6 1.5 glutamine amidotransferase compare
BPHYT_RS33010 +0.6 1.9 hypothetical protein compare
BPHYT_RS31675 +0.6 1.0 hypothetical protein compare
BPHYT_RS13555 +0.6 0.9 acyl-CoA dehydrogenase compare
BPHYT_RS01620 +0.6 4.4 sensor histidine kinase compare
BPHYT_RS22165 +0.6 2.5 hypothetical protein compare
BPHYT_RS23410 +0.6 2.1 hypothetical protein compare
BPHYT_RS26960 +0.6 1.9 LysR family transcriptional regulator compare
BPHYT_RS30750 +0.6 0.8 GntR family transcriptional regulator compare
BPHYT_RS32845 +0.6 1.7 ABC transporter substrate-binding protein compare
BPHYT_RS20430 +0.6 1.4 3-dehydroquinate dehydratase compare
BPHYT_RS08665 +0.6 0.7 hypothetical protein compare
BPHYT_RS09850 +0.6 1.2 molybdopterin oxidoreductase compare
BPHYT_RS05650 +0.6 1.0 hypothetical protein compare
BPHYT_RS15135 +0.6 2.4 3-ketoacyl-ACP reductase compare
BPHYT_RS18445 +0.6 1.7 hypothetical protein compare
BPHYT_RS20715 +0.6 0.8 peptidase compare
BPHYT_RS26525 +0.6 0.9 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS32250 +0.6 1.8 membrane protein compare
BPHYT_RS21585 +0.6 1.7 short-chain dehydrogenase compare
BPHYT_RS17430 +0.6 2.2 thiol:disulfide interchange protein compare
BPHYT_RS23345 +0.6 2.0 nucleotide sugar dehydrogenase compare
BPHYT_RS07465 +0.6 1.5 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Xylose in Burkholderia phytofirmans PsJN

For carbon source D-Xylose across organisms