Experiment set2IT069 for Herbaspirillum seropedicae SmR1

Compare to:

LB with Thallium(I) acetate 0.001 mg/ml

200 most important genes:

  gene name fitness t score description  
HSERO_RS17810 -6.5 -2.1 glycosyl transferase compare
HSERO_RS10805 -5.3 -2.8 succinyldiaminopimelate aminotransferase compare
HSERO_RS08405 -5.3 -2.4 membrane protein compare
HSERO_RS02145 -5.3 -1.7 ferritin compare
HSERO_RS17815 -5.2 -6.0 glycosyl transferase compare
HSERO_RS17105 -5.2 -2.2 DNA polymerase III subunit epsilon compare
HSERO_RS09915 -4.5 -3.8 transcriptional regulator compare
HSERO_RS17110 -4.4 -3.6 ribonuclease H compare
HSERO_RS07755 -3.8 -5.0 glutamate racemase compare
HSERO_RS21025 -3.7 -6.2 hypothetical protein compare
HSERO_RS02090 -3.6 -1.6 Holliday junction DNA helicase RuvA compare
HSERO_RS15630 -3.6 -1.6 exodeoxyribonuclease III compare
HSERO_RS02260 -3.5 -2.7 DNA polymerase I compare
HSERO_RS21345 -3.5 -5.8 cell division inhibitor MinD compare
HSERO_RS16885 -3.5 -2.2 magnesium-transporting ATPase compare
HSERO_RS07730 -3.1 -5.0 ferredoxin-NADP reductase compare
HSERO_RS02215 -3.1 -1.4 D-arabinitol 4-dehydrogenase compare
HSERO_RS10460 -3.1 -2.3 homoserine dehydrogenase compare
HSERO_RS21060 -2.9 -8.7 hypothetical protein compare
HSERO_RS11465 -2.9 -3.0 sodium:proton antiporter compare
HSERO_RS21000 -2.9 -5.9 aminotransferase DegT compare
HSERO_RS21100 -2.9 -13.2 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS21005 -2.8 -10.4 asparagine synthase compare
HSERO_RS21055 -2.7 -5.2 hypothetical protein compare
HSERO_RS21010 -2.6 -9.9 LPS biosynthesis protein compare
HSERO_RS19265 -2.6 -2.4 LysR family transcriptional regulator compare
HSERO_RS20260 -2.4 -2.2 2-alkenal reductase compare
HSERO_RS17980 -2.4 -2.7 GTP-binding protein compare
HSERO_RS04265 -2.4 -1.8 tyrosine recombinase XerD compare
HSERO_RS04330 -2.3 -7.0 ATP-dependent exonuclease compare
HSERO_RS21340 -2.3 -3.6 septum formation inhibitor protein compare
HSERO_RS04325 -2.3 -5.8 helicase I compare
HSERO_RS21035 -2.2 -1.9 hypothetical protein compare
HSERO_RS10910 -2.2 -5.3 peptidase compare
HSERO_RS21590 -2.1 -7.9 ATP-dependent DNA helicase Rep compare
HSERO_RS20355 -2.1 -4.4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS09155 -2.1 -11.1 DNA topoisomerase IV subunit B compare
HSERO_RS19550 -2.1 -4.1 hypothetical protein compare
HSERO_RS13965 -2.1 -3.0 single-stranded DNA exonuclease compare
HSERO_RS21040 -2.1 -6.4 3-oxoacyl-ACP synthase compare
HSERO_RS20975 -2.0 -4.2 UDP-galactose-4-epimerase compare
HSERO_RS10410 -2.0 -3.7 alkyl hydroperoxide reductase compare
HSERO_RS21640 -2.0 -3.4 recombinase RdgC compare
HSERO_RS03270 -1.9 -3.2 protein RecA compare
HSERO_RS12360 -1.9 -2.4 hypothetical protein compare
HSERO_RS09455 -1.9 -3.6 NAD synthetase compare
HSERO_RS00430 -1.9 -3.3 glutamate--cysteine ligase compare
HSERO_RS05515 -1.8 -1.3 glucose-6-phosphate isomerase compare
HSERO_RS15840 -1.8 -6.4 excinuclease ABC subunit B compare
HSERO_RS10035 -1.8 -2.5 hypothetical protein compare
HSERO_RS20680 -1.8 -6.8 multidrug DMT transporter permease compare
HSERO_RS02160 -1.7 -1.6 DNA-dependent helicase compare
HSERO_RS20695 -1.7 -5.7 methyltransferase compare
HSERO_RS00450 -1.7 -3.2 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS03875 -1.7 -1.5 hypothetical protein compare
HSERO_RS12920 -1.7 -1.6 trigger factor compare
HSERO_RS03450 -1.6 -2.5 energy transducer protein TonB compare
HSERO_RS09910 -1.6 -1.9 integration host factor subunit alpha compare
HSERO_RS02375 -1.6 -7.6 NAD-dependent dehydratase compare
HSERO_RS20995 -1.5 -4.0 NAD dependent epimerase/dehydratase compare
HSERO_RS20630 -1.5 -2.1 phenylacetic acid degradation protein compare
HSERO_RS07395 -1.5 -2.2 aldose 1-epimerase compare
HSERO_RS10720 -1.4 -1.9 alanine acetyltransferase compare
HSERO_RS14835 -1.4 -3.1 peptidase M23 compare
HSERO_RS03445 -1.4 -3.8 biopolymer transport transmembrane protein compare
HSERO_RS06165 -1.4 -5.6 ATP-dependent DNA helicase RecG compare
HSERO_RS22045 -1.4 -2.1 UDP-glucose 4-epimerase compare
HSERO_RS23435 -1.4 -2.0 MerR family transcriptional regulator compare
HSERO_RS19810 -1.3 -7.6 excinuclease ABC subunit A compare
HSERO_RS06170 -1.3 -2.1 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS02330 -1.3 -3.9 aspartate carbamoyltransferase compare
HSERO_RS07570 -1.3 -2.2 membrane protein compare
HSERO_RS10400 -1.2 -5.4 inorganic phosphate transporter compare
HSERO_RS02765 -1.2 -1.4 general stress protein compare
HSERO_RS13125 -1.2 -2.7 stress responsive protein compare
HSERO_RS09415 -1.2 -3.4 ribosomal large subunit pseudouridine synthase C compare
HSERO_RS21475 -1.2 -1.5 recombinase XerC compare
HSERO_RS09690 -1.2 -6.4 excinuclease ABC subunit C compare
HSERO_RS09145 -1.2 -3.1 DNA topoisomerase IV subunit A compare
HSERO_RS10395 -1.2 -1.5 phosphate transport regulator compare
HSERO_RS18175 -1.2 -1.5 nitrate reductase compare
HSERO_RS07970 -1.2 -2.1 formyltetrahydrofolate deformylase compare
HSERO_RS09670 -1.1 -2.8 DNA repair protein RecO compare
HSERO_RS02560 -1.1 -1.4 hypothetical protein compare
HSERO_RS05540 -1.1 -1.5 cytochrome C' compare
HSERO_RS19135 -1.1 -1.4 exodeoxyribonuclease compare
HSERO_RS03240 -1.1 -1.8 membrane protein compare
HSERO_RS04335 -1.1 -2.4 sodium:proton antiporter compare
HSERO_RS17155 -1.1 -1.6 RNA helicase compare
HSERO_RS20325 -1.1 -3.5 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS13490 -1.1 -1.3 pseudouridine synthase compare
HSERO_RS11070 -1.0 -2.3 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS07300 -1.0 -2.6 glutamate--cysteine ligase compare
HSERO_RS02950 -1.0 -4.4 DNA methyltransferase compare
HSERO_RS20980 -1.0 -3.2 oxidoreductase compare
HSERO_RS02095 -1.0 -1.1 Holliday junction DNA helicase RuvB compare
HSERO_RS14185 -1.0 -1.2 FeS cluster assembly scaffold IscU compare
HSERO_RS14150 -1.0 -1.4 RNA polymerase sigma factor compare
HSERO_RS00965 -1.0 -0.9 trehalose-phosphatase compare
HSERO_RS19995 -1.0 -0.9 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS17220 -1.0 -0.9 membrane protein compare
HSERO_RS21735 -1.0 -2.0 hypothetical protein compare
HSERO_RS20970 -0.9 -5.2 NDP-N-acetyl-D-mannosaminuronate dehydrogenase compare
HSERO_RS02780 -0.9 -1.2 hypothetical protein compare
HSERO_RS21990 -0.9 -1.1 hypothetical protein compare
HSERO_RS14520 -0.9 -2.2 magnesium transporter compare
HSERO_RS19785 -0.9 -3.3 sensor histidine kinase compare
HSERO_RS19610 -0.9 -2.1 hypothetical protein compare
HSERO_RS00365 -0.9 -1.5 membrane protein compare
HSERO_RS08045 -0.9 -3.8 preprotein translocase subunit TatB compare
HSERO_RS18555 -0.9 -2.5 phosphopantetheinyl transferase compare
HSERO_RS15065 -0.9 -3.0 laccase compare
HSERO_RS10340 -0.9 -1.8 flagellar biosynthesis protein FliS compare
HSERO_RS12770 -0.9 -1.4 3-oxoacyl-ACP reductase compare
HSERO_RS07910 -0.9 -2.1 alkylhydroperoxidase compare
HSERO_RS12470 -0.9 -1.1 chemotaxis protein CheY compare
HSERO_RS05850 -0.9 -2.8 exodeoxyribonuclease VII large subunit compare
HSERO_RS00135 -0.9 -4.2 hypothetical protein compare
HSERO_RS18775 -0.9 -2.2 phage killer protein compare
HSERO_RS21075 -0.9 -3.3 asparagine synthase compare
HSERO_RS15575 -0.9 -1.1 uroporphyrin-III C-methyltransferase compare
HSERO_RS04715 -0.9 -2.5 hypothetical protein compare
HSERO_RS01165 -0.9 -2.2 dihydroneopterin triphosphate pyrophosphatase compare
HSERO_RS09335 -0.9 -1.0 DNA-3-methyladenine glycosylase compare
HSERO_RS06720 -0.9 -2.2 Rieske (2Fe-2S) protein compare
HSERO_RS22355 -0.9 -1.9 urea carboxylase compare
HSERO_RS22185 -0.9 -3.3 diguanylate cyclase compare
HSERO_RS08655 -0.8 -1.0 acetolactate synthase compare
HSERO_RS17720 -0.8 -4.0 aminopeptidase N compare
HSERO_RS03085 -0.8 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS18070 -0.8 -1.3 hypothetical protein compare
HSERO_RS23945 -0.8 -1.9 cobyric acid synthase CobQ compare
HSERO_RS21470 -0.8 -2.3 hypothetical protein compare
HSERO_RS10815 -0.8 -3.1 chromosome segregation protein SMC compare
HSERO_RS10020 -0.8 -1.0 flippase compare
HSERO_RS07035 -0.8 -3.5 peptidase M48 compare
HSERO_RS19835 -0.8 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS01095 -0.8 -2.5 hypothetical protein compare
HSERO_RS20370 -0.8 -3.1 ABC transporter ATP-binding protein compare
HSERO_RS18770 -0.8 -1.9 transcriptional regulator compare
HSERO_RS01880 -0.8 -2.0 N-acetyl-anhydromuranmyl-L-alanine amidase compare
HSERO_RS13805 -0.8 -1.9 glycosyl transferase family 1 compare
HSERO_RS15665 -0.8 -0.9 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS03340 -0.8 -2.2 branched-chain amino acid transporter compare
HSERO_RS22205 -0.8 -1.3 L-rhamnose mutarotase compare
HSERO_RS20780 -0.8 -2.8 cytochrome C oxidase assembly protein compare
HSERO_RS04135 -0.8 -1.3 amidohydrolase compare
HSERO_RS13560 -0.8 -1.9 transcriptional regulator compare
HSERO_RS10555 -0.8 -1.7 ribonuclease compare
HSERO_RS23810 -0.8 -2.1 hypothetical protein compare
HSERO_RS02010 -0.8 -4.4 anhydro-N-acetylmuramic acid kinase compare
HSERO_RS23345 -0.8 -2.4 16S rRNA methyltransferase compare
HSERO_RS01785 -0.8 -1.4 hypothetical protein compare
HSERO_RS10010 -0.8 -1.6 UDP-glucose 6-dehydrogenase compare
HSERO_RS18360 -0.8 -1.7 hypothetical protein compare
HSERO_RS06905 -0.7 -2.6 esterase compare
HSERO_RS21240 -0.7 -1.6 polar amino acid ABC transporter permease compare
HSERO_RS01315 -0.7 -1.4 transcriptional regulator compare
HSERO_RS06175 -0.7 -2.7 queuine tRNA-ribosyltransferase compare
HSERO_RS03275 -0.7 -3.5 regulatory protein RecX compare
HSERO_RS03840 -0.7 -2.9 hypothetical protein compare
HSERO_RS09250 -0.7 -1.2 hypothetical protein compare
HSERO_RS19630 -0.7 -0.7 AMP nucleosidase compare
HSERO_RS05440 -0.7 -1.0 hypothetical protein compare
HSERO_RS20985 -0.7 -1.1 serine acetyltransferase compare
HSERO_RS02455 -0.7 -3.0 UDP pyrophosphate phosphatase compare
HSERO_RS14325 -0.7 -1.8 hypothetical protein compare
HSERO_RS13870 -0.7 -1.3 hypothetical protein compare
HSERO_RS16565 -0.7 -2.0 hypothetical protein compare
HSERO_RS12885 -0.7 -2.1 spore coat protein compare
HSERO_RS12995 -0.7 -1.0 DNAase compare
HSERO_RS06365 -0.7 -2.1 hypothetical protein compare
HSERO_RS15670 -0.7 -1.7 major facilitator transporter compare
HSERO_RS17850 -0.7 -1.4 glutamyl-Q tRNA(Asp) ligase compare
HSERO_RS03235 -0.7 -0.9 hypothetical protein compare
HSERO_RS10600 -0.7 -3.1 diguanylate phosphodiesterase compare
HSERO_RS14640 -0.7 -3.3 peptide chain release factor 3 compare
HSERO_RS23715 -0.7 -3.3 hypothetical protein compare
HSERO_RS07155 -0.7 -3.0 peptidase C69 compare
HSERO_RS06760 -0.7 -1.9 hypothetical protein compare
HSERO_RS16850 -0.7 -1.7 lipoprotein compare
HSERO_RS22625 -0.7 -0.9 LysR family transcriptional regulator compare
HSERO_RS06015 -0.7 -0.9 hisitidine kinase compare
HSERO_RS01460 -0.7 -1.1 transcriptional regulator compare
HSERO_RS17565 -0.7 -1.7 glutamate/aspartate ABC transporter permease GltJ compare
HSERO_RS19520 -0.7 -1.2 hypothetical protein compare
HSERO_RS19505 -0.7 -1.5 membrane protein compare
HSERO_RS02100 -0.7 -1.0 4-oxalocrotonate decarboxylase compare
HSERO_RS11590 -0.7 -1.4 hypothetical protein compare
HSERO_RS09085 -0.7 -1.1 LysR family transcriptional regulator compare
HSERO_RS08515 -0.7 -2.4 diguanylate cyclase compare
HSERO_RS03635 -0.7 -1.1 D-mannose ABC transporter, substrate-binding component (from data) compare
HSERO_RS05265 -0.7 -2.0 L-fucono-1,5-lactonase (from data) compare
HSERO_RS04630 -0.7 -2.3 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS18725 -0.7 -1.3 transcriptional regulator compare
HSERO_RS05810 -0.7 -1.4 sulfurtransferase compare
HSERO_RS02955 -0.7 -2.8 2-hydroxychromene-2-carboxylate isomerase compare
HSERO_RS18355 -0.7 -2.3 recombinase RecR compare
HSERO_RS20405 -0.7 -2.6 GTP-binding protein YchF compare
HSERO_RS11105 -0.7 -0.8 beta-lactamase compare


Specific Phenotypes

For 7 genes in this experiment

For stress Thallium(I) acetate in Herbaspirillum seropedicae SmR1

For stress Thallium(I) acetate across organisms