Experiment set2IT068 for Pantoea sp. MT58

Compare to:

Defined media control, aerobic

200 most important genes:

  gene name fitness t score description  
IAI47_15635 -7.1 -4.9 RNA polymerase-binding protein DksA compare
IAI47_09185 -6.0 -4.1 glutamine amidotransferase compare
IAI47_09175 -5.7 -7.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_09180 -5.7 -10.2 anthranilate phosphoribosyltransferase compare
IAI47_09040 -5.5 -3.8 NAD-dependent epimerase compare
IAI47_07060 -5.3 -12.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_05275 -5.2 -8.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_13690 -5.1 -1.8 cell envelope integrity protein TolA compare
IAI47_13180 -5.0 -7.7 manganese-binding transcriptional regulator MntR compare
IAI47_16205 -5.0 -10.6 threonine synthase compare
IAI47_09170 -5.0 -8.9 tryptophan synthase subunit beta compare
IAI47_13050 -4.9 -7.1 YbjN domain-containing protein compare
IAI47_15605 -4.9 -3.4 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_01050 -4.9 -19.8 ketol-acid reductoisomerase compare
IAI47_09190 -4.9 -15.0 anthranilate synthase component 1 compare
IAI47_17220 -4.9 -29.3 glutamate synthase large subunit compare
IAI47_10520 -4.9 -3.4 pyridoxamine 5'-phosphate oxidase compare
IAI47_09165 -4.8 -6.6 tryptophan synthase subunit alpha compare
IAI47_17225 -4.8 -22.2 sulfite reductase subunit alpha compare
IAI47_05070 -4.8 -1.7 outer membrane protein assembly factor BamB compare
IAI47_07090 -4.7 -14.7 histidinol dehydrogenase compare
IAI47_07085 -4.7 -18.3 histidinol-phosphate transaminase compare
IAI47_12645 -4.7 -7.0 porin OmpA compare
IAI47_00895 -4.6 -22.6 phosphoenolpyruvate carboxylase compare
IAI47_03860 -4.6 -15.8 diaminopimelate decarboxylase compare
IAI47_13745 -4.6 -3.2 2-oxoglutarate dehydrogenase E1 component compare
IAI47_03725 -4.6 -14.0 phosphoglycerate dehydrogenase compare
IAI47_00455 -4.5 -13.3 nitrogen regulation protein NR(II) compare
IAI47_07070 -4.5 -10.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_16080 -4.4 -9.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_01040 -4.4 -14.7 threonine ammonia-lyase, biosynthetic compare
IAI47_01035 -4.4 -22.8 dihydroxy-acid dehydratase compare
IAI47_04930 -4.4 -23.0 phosphoribosylformylglycinamidine synthase compare
IAI47_16215 -4.4 -20.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_12705 -4.4 -14.6 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_07065 -4.4 -15.0 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_13685 -4.3 -2.4 Tol-Pal system protein TolB compare
IAI47_07080 -4.3 -14.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_06275 -4.3 -21.1 amidophosphoribosyltransferase compare
IAI47_18015 -4.3 -17.9 homoserine O-succinyltransferase compare
IAI47_03855 -4.3 -9.7 LysR family transcriptional regulator compare
IAI47_18040 -4.1 -20.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_05180 -4.1 -15.7 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_17185 -4.1 -4.9 RNA polymerase factor sigma-54 compare
IAI47_18045 -4.1 -14.3 phosphoribosylamine--glycine ligase compare
IAI47_12215 -4.1 -16.0 dihydroorotase compare
IAI47_07095 -4.1 -11.3 ATP phosphoribosyltransferase compare
IAI47_07075 -4.1 -12.2 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_13770 -4.0 -12.7 citrate synthase compare
IAI47_16010 -4.0 -18.3 3-isopropylmalate dehydratase large subunit compare
IAI47_18530 -4.0 -3.6 thioredoxin TrxA compare
IAI47_14350 -3.9 -8.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_09010 -3.9 -9.9 formyltetrahydrofolate deformylase compare
IAI47_01030 -3.9 -16.4 branched-chain amino acid transaminase compare
IAI47_00880 -3.9 -16.6 cystathionine gamma-synthase compare
IAI47_12865 -3.9 -12.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_00450 -3.8 -15.2 nitrogen regulation protein NR(I) compare
IAI47_16120 -3.8 -14.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_16210 -3.8 -11.7 homoserine kinase compare
IAI47_16870 -3.8 -8.1 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_16005 -3.8 -12.7 3-isopropylmalate dehydrogenase compare
IAI47_06235 -3.7 -10.2 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_16115 -3.7 -21.6 carbamoyl-phosphate synthase large subunit compare
IAI47_00900 -3.7 -14.9 acetylornithine deacetylase compare
IAI47_04410 -3.7 -16.6 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_15110 -3.7 -7.6 chromophore lyase compare
IAI47_13900 -3.7 -18.0 asparagine synthase B compare
IAI47_16000 -3.7 -17.5 2-isopropylmalate synthase compare
IAI47_00920 -3.7 -16.6 argininosuccinate lyase compare
IAI47_10320 -3.6 -2.4 Rrf2 family transcriptional regulator compare
IAI47_04190 -3.6 -8.2 adenylyl-sulfate kinase compare
IAI47_14355 -3.5 -10.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_04895 -3.5 -4.7 pyridoxine 5'-phosphate synthase compare
IAI47_09240 -3.5 -2.4 HTH-type transcriptional regulator CysB compare
IAI47_16015 -3.4 -7.6 3-isopropylmalate dehydratase small subunit compare
IAI47_16350 -3.4 -10.6 phosphoserine phosphatase compare
IAI47_09275 -3.4 -9.6 orotidine-5'-phosphate decarboxylase compare
IAI47_00905 -3.4 -12.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_00915 -3.3 -14.4 argininosuccinate synthase compare
IAI47_00460 -3.3 -2.3 glutamate--ammonia ligase compare
IAI47_00300 -3.2 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_00600 -3.2 -10.0 orotate phosphoribosyltransferase compare
IAI47_15120 -3.2 -9.9 glutamate 5-kinase compare
IAI47_16830 -3.1 -12.9 ornithine carbamoyltransferase compare
IAI47_16860 -3.1 -14.3 aspartate carbamoyltransferase compare
IAI47_03975 -3.0 -12.7 amino-acid N-acetyltransferase compare
IAI47_08085 -3.0 -7.1 helix-turn-helix domain-containing protein compare
IAI47_02695 -3.0 -11.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_04160 -3.0 -12.2 phosphoadenylyl-sulfate reductase compare
IAI47_04150 -2.9 -13.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_14945 -2.9 -3.9 pyrroline-5-carboxylate reductase compare
IAI47_04155 -2.9 -12.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_00780 -2.9 -3.9 6-phosphofructokinase compare
IAI47_03375 -2.9 -12.1 peptide chain release factor 3 compare
IAI47_04120 -2.8 -16.8 GTP diphosphokinase compare
IAI47_01365 -2.8 -1.9 inorganic phosphate transporter PitA compare
IAI47_16085 -2.8 -2.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_15115 -2.8 -11.6 glutamate-5-semialdehyde dehydrogenase compare
IAI47_12915 -2.8 -11.1 leucine-responsive transcriptional regulator Lrp compare
IAI47_15810 -2.7 -3.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_00910 -2.6 -8.4 acetylglutamate kinase compare
IAI47_06980 -2.6 -4.7 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_18410 -2.5 -4.7 diaminopimelate epimerase compare
IAI47_13740 -2.5 -1.6 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_00515 -2.4 -2.5 DNA-directed RNA polymerase subunit omega compare
IAI47_09360 -2.3 -2.1 peptide ABC transporter ATP-binding protein SapF compare
IAI47_17020 -2.3 -5.9 30S ribosome-binding factor RbfA compare
IAI47_11450 -2.3 -6.2 ankyrin repeat domain-containing protein compare
IAI47_00655 -2.2 -7.0 glycosyltransferase family 4 protein compare
IAI47_16220 -2.2 -4.2 thr operon leader peptide compare
IAI47_18315 -2.2 -5.6 HTH-type transcriptional regulator MetR compare
IAI47_15540 -2.2 -10.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_07165 -2.1 -2.5 exodeoxyribonuclease I compare
IAI47_01045 -2.1 -5.9 HTH-type transcriptional activator IlvY compare
IAI47_01955 -2.1 -9.9 aspartate aminotransferase family protein compare
IAI47_00465 -2.1 -3.9 ribosome-dependent GTPase TypA compare
IAI47_03680 -2.0 -9.6 transketolase compare
IAI47_14695 -2.0 -5.2 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_12060 -1.9 -4.8 beta-ketoacyl-ACP synthase II compare
IAI47_00875 -1.9 -1.5 met regulon transcriptional regulator MetJ compare
IAI47_21880 -1.8 -1.0 ParA family protein compare
IAI47_04835 -1.8 -7.1 ATP-dependent RNA helicase SrmB compare
IAI47_05465 -1.7 -4.4 bile acid:sodium symporter compare
IAI47_02090 -1.7 -4.0 elongation factor Tu compare
IAI47_13950 -1.7 -1.6 PhoH family protein compare
IAI47_04175 -1.7 -6.9 uroporphyrinogen-III C-methyltransferase compare
IAI47_21690 -1.7 -8.6 TetR/AcrR family transcriptional regulator compare
IAI47_05440 -1.7 -8.2 cysteine synthase A compare
IAI47_15600 -1.6 -2.3 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_08105 -1.6 -2.9 DinI family protein compare
IAI47_03685 -1.6 -6.5 erythrose-4-phosphate dehydrogenase compare
IAI47_06380 -1.6 -2.3 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_04185 -1.5 -9.6 sulfate adenylyltransferase subunit CysN compare
IAI47_19945 -1.5 -1.2 hypothetical protein compare
IAI47_04400 -1.5 -6.1 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_17035 -1.4 -2.1 ribosome maturation factor RimP compare
IAI47_06270 -1.4 -7.0 colicin V production protein compare
IAI47_03595 -1.4 -3.6 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_18830 -1.4 -1.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_04505 -1.4 -6.2 transcriptional repressor MprA compare
IAI47_03570 -1.3 -3.0 YggL family protein compare
IAI47_18540 -1.3 -5.6 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_17965 -1.3 -6.9 glucose-6-phosphate isomerase compare
IAI47_06370 -1.3 -3.9 NADH-quinone oxidoreductase subunit C/D compare
IAI47_18215 -1.3 -0.8 Trk system potassium transporter TrkH compare
IAI47_09235 -1.3 -0.9 type I DNA topoisomerase compare
IAI47_17005 -1.3 -4.9 polyribonucleotide nucleotidyltransferase compare
IAI47_10840 -1.3 -3.7 pyruvate kinase PykF compare
IAI47_02585 -1.3 -2.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_00760 -1.2 -2.9 envelope stress response regulator transcription factor CpxR compare
IAI47_04870 -1.2 -4.1 elongation factor 4 compare
IAI47_17580 -1.2 -5.7 hypothetical protein compare
IAI47_04450 -1.2 -2.0 tRNA-Ala compare
IAI47_13695 -1.2 -0.9 colicin uptake protein TolR compare
IAI47_00755 -1.2 -7.0 envelope stress sensor histidine kinase CpxA compare
IAI47_09245 -1.2 -2.6 YmiA family putative membrane protein compare
IAI47_10890 -1.2 -8.7 FAD-binding oxidoreductase compare
IAI47_09790 -1.2 -2.4 DUF1161 domain-containing protein compare
IAI47_10755 -1.2 -1.8 DUF1289 domain-containing protein compare
IAI47_08440 -1.2 -1.5 crossover junction endodeoxyribonuclease RuvC compare
IAI47_11310 -1.2 -2.7 redox-regulated ATPase YchF compare
IAI47_14690 -1.2 -4.3 cytochrome o ubiquinol oxidase subunit III compare
IAI47_18145 -1.2 -1.7 elongation factor Tu compare
IAI47_03610 -1.2 -3.4 YqgE/AlgH family protein compare
IAI47_20705 -1.2 -1.2 sulfur carrier protein ThiS compare
IAI47_04865 -1.1 -1.4 SoxR-reducing system protein RseC compare
IAI47_10925 -1.1 -2.3 EAL domain-containing protein compare
IAI47_17900 -1.1 -1.3 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_05580 -1.1 -1.3 membrane protein YpdK compare
IAI47_11760 -1.1 -1.4 TonB-dependent siderophore receptor compare
IAI47_07885 -1.1 -1.0 tRNA-Asn compare
IAI47_05150 -1.1 -4.5 exopolyphosphatase compare
IAI47_04180 -1.1 -6.5 sulfate adenylyltransferase subunit CysD compare
IAI47_06055 -1.1 -3.3 tRNA-Arg compare
IAI47_16095 -1.1 -3.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_12175 -1.1 -1.9 anti-sigma-28 factor FlgM compare
IAI47_09210 -1.1 -4.2 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_12570 -1.0 -1.0 tRNA-Ser compare
IAI47_13635 -1.0 -5.1 quinolinate synthase NadA compare
IAI47_07550 -1.0 -1.1 tRNA-Asn compare
IAI47_21730 -1.0 -3.2 hypothetical protein compare
IAI47_06135 -1.0 -2.5 phosphohistidine phosphatase SixA compare
IAI47_12410 -1.0 -2.9 MarR family transcriptional regulator compare
IAI47_06245 -1.0 -2.4 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_04425 -1.0 -4.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_03440 -1.0 -1.7 general stress protein compare
IAI47_08135 -1.0 -5.5 flagellar export chaperone FliS compare
IAI47_11930 -1.0 -3.9 two-component system response regulator PhoP compare
IAI47_06390 -1.0 -1.8 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_11935 -0.9 -7.5 two-component system sensor histidine kinase PhoQ compare
IAI47_00290 -0.9 -3.0 F0F1 ATP synthase subunit I compare
IAI47_03805 -0.9 -3.0 FAD assembly factor SdhE compare
IAI47_01100 -0.9 -5.8 malate dehydrogenase (quinone) compare
IAI47_15660 -0.9 -2.9 pantoate--beta-alanine ligase compare
IAI47_07470 -0.9 -1.8 AlpA family transcriptional regulator compare
IAI47_10775 -0.9 -2.5 ribonuclease T compare
IAI47_01180 -0.9 -1.0 prolyl oligopeptidase family serine peptidase compare
IAI47_07795 -0.9 -3.6 phosphonate metabolism protein PhnP compare
IAI47_17120 -0.9 -1.3 BolA family iron metabolism protein IbaG compare
IAI47_09305 -0.9 -1.8 cyclic di-GMP phosphodiesterase compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in no stress control experiments