Experiment set2IT068 for Herbaspirillum seropedicae SmR1

Compare to:

LB with sodium fluoride 100 mM

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS18935 +3.1 15.2 LysR family transcriptional regulator compare
HSERO_RS01825 +3.0 16.1 RNA pyrophosphohydrolase compare
HSERO_RS02350 +2.3 9.5 diadenosine tetraphosphatase compare
HSERO_RS21540 +2.2 6.3 alkyl hydroperoxide reductase subunit C compare
HSERO_RS22350 +2.2 2.5 urea carboxylase compare
HSERO_RS23610 +2.1 2.4 urease subunit gamma compare
HSERO_RS02140 +1.9 2.2 thiamine-phosphate synthase compare
HSERO_RS12625 +1.8 2.6 sulfonate ABC transporter ATP-binding lipoprotein compare
HSERO_RS23185 +1.8 2.2 succinyl-CoA:3-ketoacid-CoA transferase compare
HSERO_RS23525 +1.7 2.5 hypothetical protein compare
HSERO_RS03435 +1.6 2.0 bacterioferritin compare
HSERO_RS08765 +1.6 7.5 hypothetical protein compare
HSERO_RS21445 +1.5 1.1 lipid A biosynthesis acyltransferase compare
HSERO_RS04135 +1.5 3.4 amidohydrolase compare
HSERO_RS08770 +1.5 8.4 membrane protein compare
HSERO_RS05890 +1.4 1.6 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS04170 +1.4 2.1 hypothetical protein compare
HSERO_RS14025 +1.4 3.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS21620 +1.4 3.8 amino acid ABC transporter permease compare
HSERO_RS19535 +1.3 1.8 nucleotide-binding protein compare
HSERO_RS22175 +1.3 1.4 hypothetical protein compare
HSERO_RS13885 +1.3 8.7 histidine kinase compare
HSERO_RS12385 +1.3 1.8 endonuclease compare
HSERO_RS18965 +1.3 1.8 thiopurine S-methyltransferase compare
HSERO_RS01510 +1.2 3.7 membrane protein compare
HSERO_RS16305 +1.2 2.0 hypothetical protein compare
HSERO_RS10095 +1.2 1.5 hypothetical protein compare
HSERO_RS02560 +1.2 2.4 hypothetical protein compare
HSERO_RS10305 +1.2 5.7 flagellar motor switch protein FliG compare
HSERO_RS14985 +1.2 4.2 transcriptional regulator compare
HSERO_RS09160 +1.2 2.7 amidase compare
HSERO_RS10255 +1.2 1.3 flagellar biosynthesis protein FliQ compare
HSERO_RS08775 +1.1 2.0 membrane protein compare
HSERO_RS09780 +1.1 1.1 phosphoglycerate mutase compare
HSERO_RS21615 +1.1 6.9 ABC transporter substrate-binding protein compare
HSERO_RS07380 +1.1 1.3 hypothetical protein compare
HSERO_RS05855 +1.1 4.2 flagellar motor protein MotA compare
HSERO_RS22525 +1.1 1.1 glyoxalase compare
HSERO_RS10260 +1.1 4.6 flagellar biosynthesis protein FliP compare
HSERO_RS15050 +1.1 3.0 hypothetical protein compare
HSERO_RS04405 +1.1 1.4 transcriptional regulator compare
HSERO_RS13870 +1.1 3.5 hypothetical protein compare
HSERO_RS22330 +1.1 4.4 hypothetical protein compare
HSERO_RS10540 +1.1 4.3 camphor resistance protein CrcB compare
HSERO_RS21110 +1.1 5.2 dTDP-glucose 4,6-dehydratase compare
HSERO_RS16665 +1.0 5.9 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
HSERO_RS04150 +1.0 1.5 hypothetical protein compare
HSERO_RS13650 +1.0 4.2 high-affinity Fe2+/Pb2+ permease compare
HSERO_RS07700 +1.0 2.1 ABC transporter permease compare
HSERO_RS08015 +1.0 1.8 MerR family transcriptional regulator compare
HSERO_RS01985 +1.0 2.7 energy transducer TonB compare
HSERO_RS20035 +1.0 1.7 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS01460 +1.0 1.9 transcriptional regulator compare
HSERO_RS10315 +1.0 2.8 flagellar hook-basal body protein FliE compare
HSERO_RS14950 +1.0 1.5 purine-binding chemotaxis protein compare
HSERO_RS02545 +0.9 0.9 membrane protein compare
HSERO_RS10280 +0.9 0.9 flagellar basal body protein FliL compare
HSERO_RS22285 +0.9 2.3 GntR family transcriptional regulator compare
HSERO_RS12195 +0.9 1.9 hypothetical protein compare
HSERO_RS11665 +0.9 0.9 nitrate ABC transporter ATP-binding protein compare
HSERO_RS09520 +0.9 1.2 alanyl-tRNA synthetase compare
HSERO_RS10310 +0.9 3.1 flagellar M-ring protein FliF compare
HSERO_RS12170 +0.9 3.0 XRE family transcriptional regulator compare
HSERO_RS16825 +0.9 1.5 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS08335 +0.9 0.9 4-hydroxyphenylpyruvate dioxygenase compare
HSERO_RS02180 +0.9 2.4 fructokinase compare
HSERO_RS21525 +0.9 1.8 alpha/beta hydrolase compare
HSERO_RS10730 +0.9 1.2 hypothetical protein compare
HSERO_RS11430 +0.9 1.4 GntR family transcriptional regulator compare
HSERO_RS13590 +0.9 2.5 D-galactose-1-dehydrogenase compare
HSERO_RS11985 +0.9 1.5 permease compare
HSERO_RS05140 +0.9 1.7 MarR family transcriptional regulator compare
HSERO_RS18955 +0.9 3.0 glycerol-3-phosphate ABC transporter substrate-binding protein compare
HSERO_RS01375 +0.9 1.3 hypothetical protein compare
HSERO_RS05245 +0.9 2.4 hypothetical protein compare
HSERO_RS22310 +0.9 1.2 LysR family transcriptional regulator compare
HSERO_RS16700 +0.9 1.6 ABC transporter substrate-binding protein compare
HSERO_RS07345 +0.9 1.0 hypothetical protein compare
HSERO_RS17265 +0.9 4.9 glucosyltransferase MdoH compare
HSERO_RS14500 +0.9 1.4 murein hydrolase transporter LrgA compare
HSERO_RS15345 +0.9 2.8 cytochrome BD oxidase subunit II compare
HSERO_RS18585 +0.9 2.4 hypothetical protein compare
HSERO_RS15365 +0.9 1.7 MarR family transcriptional regulator compare
HSERO_RS01185 +0.9 1.3 amino acid ABC transporter compare
HSERO_RS20920 +0.8 4.1 3-dehydroquinate synthase compare
HSERO_RS19770 +0.8 1.1 hypothetical protein compare
HSERO_RS12865 +0.8 2.0 spore coat protein compare
HSERO_RS21500 +0.8 4.5 hypothetical protein compare
HSERO_RS07300 +0.8 2.4 glutamate--cysteine ligase compare
HSERO_RS11480 +0.8 2.0 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
HSERO_RS10200 +0.8 3.7 flagellar basal body rod protein FlgF compare
HSERO_RS15055 +0.8 1.2 membrane protein compare
HSERO_RS10175 +0.8 3.3 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS02910 +0.8 2.2 IclR family transcriptional regulator compare
HSERO_RS22010 +0.8 1.1 toxin RelE compare
HSERO_RS06960 +0.8 1.7 chemotaxis protein CheY compare
HSERO_RS22625 +0.8 1.8 LysR family transcriptional regulator compare
HSERO_RS05040 +0.8 2.2 (2Fe-2S)-binding protein compare
HSERO_RS00435 +0.8 3.9 glutathione synthetase compare
HSERO_RS01160 +0.8 1.9 LysR family transcriptional regulator compare
HSERO_RS00290 +0.8 1.9 nitrate ABC transporter substrate-binding protein compare
HSERO_RS09750 +0.8 1.9 8-amino-7-oxononanoate synthase compare
HSERO_RS12075 +0.8 2.2 serine protease compare
HSERO_RS08955 +0.8 1.2 methionine ABC transporter substrate-binding protein compare
HSERO_RS11625 +0.8 2.4 dioxygenase compare
HSERO_RS08725 +0.8 1.3 transcriptional regulator compare
HSERO_RS22420 +0.8 1.5 azoreductase compare
HSERO_RS17880 +0.8 1.6 membrane protein compare
HSERO_RS00410 +0.8 2.0 phosphoheptose isomerase compare
HSERO_RS21150 +0.8 1.3 aldolase compare
HSERO_RS13415 +0.8 1.1 VdlD compare
HSERO_RS06400 +0.8 2.2 LysR family transcriptional regulator compare
HSERO_RS10265 +0.8 1.6 flagellar biosynthesis protein FliO compare
HSERO_RS05910 +0.8 1.5 phosphoribosylglycinamide formyltransferase compare
HSERO_RS10090 +0.7 1.9 oxidoreductase compare
HSERO_RS06935 +0.7 1.0 RNA-binding protein compare
HSERO_RS01500 +0.7 1.3 transketolase compare
HSERO_RS14760 +0.7 1.7 membrane protein compare
HSERO_RS03550 +0.7 1.1 glyoxalase I compare
HSERO_RS09115 +0.7 2.7 hypothetical protein compare
HSERO_RS16470 +0.7 2.3 tryptophan synthase subunit alpha compare
HSERO_RS06240 +0.7 2.6 hypothetical protein compare
HSERO_RS12850 +0.7 1.6 LuxR family transcriptional regulator compare
HSERO_RS13655 +0.7 2.6 hypothetical protein compare
HSERO_RS21035 +0.7 1.2 hypothetical protein compare
HSERO_RS19450 +0.7 1.6 indole-3-glycerol-phosphate synthase compare
HSERO_RS07400 +0.7 1.5 LysR family transcriptional regulator compare
HSERO_RS13665 +0.7 2.6 methyl-accepting chemotaxis protein compare
HSERO_RS18905 +0.7 1.5 TetR family transcriptional regulator compare
HSERO_RS13890 +0.7 2.1 LuxR family transcriptional regulator compare
HSERO_RS08170 +0.7 2.4 S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB compare
HSERO_RS15530 +0.7 1.7 chemotaxis protein CheZ compare
HSERO_RS03910 +0.7 1.1 hypothetical protein compare
HSERO_RS19405 +0.7 2.1 enoyl-CoA hydratase compare
HSERO_RS09935 +0.7 2.0 UDP-phosphate glucose phosphotransferase compare
HSERO_RS03915 +0.7 1.1 hypothetical protein compare
HSERO_RS09360 +0.7 2.5 lysine transporter LysE compare
HSERO_RS21760 +0.7 1.1 DSBA oxidoreductase compare
HSERO_RS15350 +0.7 1.4 membrane protein compare
HSERO_RS16910 +0.7 1.4 hypothetical protein compare
HSERO_RS20610 +0.7 1.9 phenylacetate-CoA oxygenase subunit PaaA compare
HSERO_RS08990 +0.7 1.7 heat shock protein 90 compare
HSERO_RS14330 +0.7 1.6 ferredoxin compare
HSERO_RS17270 +0.7 5.1 glucan biosynthesis protein D compare
HSERO_RS14045 +0.7 1.8 aldolase compare
HSERO_RS15040 +0.7 2.6 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS20625 +0.7 0.8 phenylacetate-CoA oxygenase compare
HSERO_RS10840 +0.7 3.0 cyanophycin synthetase compare
HSERO_RS21795 +0.7 0.9 CoA-binding protein compare
HSERO_RS07000 +0.7 2.6 hypothetical protein compare
HSERO_RS01445 +0.7 1.8 biopolymer transporter TonB compare
HSERO_RS13660 +0.7 1.0 membrane protein compare
HSERO_RS01720 +0.7 1.2 membrane protein compare
HSERO_RS21095 +0.7 2.9 UDP-glucose 4-epimerase compare
HSERO_RS11490 +0.7 2.3 D-ribose ABC transporter, permease component RbsC (from data) compare
HSERO_RS21920 +0.7 2.1 iron ABC transporter substrate-binding protein compare
HSERO_RS08155 +0.7 1.7 deacetylase compare
HSERO_RS12860 +0.7 2.5 histidine kinase compare
HSERO_RS15915 +0.7 2.0 hypothetical protein compare
HSERO_RS09835 +0.7 1.6 hypothetical protein compare
HSERO_RS02795 +0.7 2.1 alcohol dehydrogenase compare
HSERO_RS16995 +0.7 2.0 sensor histidine kinase compare
HSERO_RS10835 +0.7 2.2 peptide deformylase compare
HSERO_RS05630 +0.7 0.8 AsnC family transcriptional regulator compare
HSERO_RS07225 +0.7 1.6 DNA-3-methyladenine glycosylase compare
HSERO_RS23450 +0.7 1.5 hypothetical protein compare
HSERO_RS09090 +0.7 1.3 hypothetical protein compare
HSERO_RS19175 +0.7 1.6 twitching motility protein compare
HSERO_RS23545 +0.7 2.1 sodium transporter compare
HSERO_RS23455 +0.7 0.9 methylcrotonoyl-CoA carboxylase compare
HSERO_RS10250 +0.7 2.2 flagellar biosynthesis protein FliR compare
HSERO_RS09005 +0.7 1.3 type I secretion protein HlyD compare
HSERO_RS19090 +0.7 1.0 C4-dicarboxylate ABC transporter compare
HSERO_RS21450 +0.7 1.8 lipid A biosynthesis acyltransferase compare
HSERO_RS09965 +0.7 1.3 cholera toxin secretion EpsM protein compare
HSERO_RS02670 +0.7 2.0 LysR family transcriptional regulator compare
HSERO_RS17635 +0.7 1.9 RNA polymerase sigma-70 factor compare
HSERO_RS05150 +0.7 1.9 galactonate dehydratase compare
HSERO_RS22065 +0.7 1.1 EpiA compare
HSERO_RS08305 +0.6 1.6 hypothetical protein compare
HSERO_RS07090 +0.6 2.2 ABC transporter permease compare
HSERO_RS04875 +0.6 2.0 glycerol kinase compare
HSERO_RS18980 +0.6 0.8 hypothetical protein compare
HSERO_RS00450 +0.6 2.1 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS07645 +0.6 1.9 RND transporter MFP subunit compare
HSERO_RS04970 +0.6 1.5 dioxygenase compare
HSERO_RS14320 +0.6 0.6 FmdB family transcriptional regulator compare
HSERO_RS07080 +0.6 2.3 ABC transporter ATP-binding protein compare
HSERO_RS12135 +0.6 2.2 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
HSERO_RS07255 +0.6 0.8 glutaminase compare
HSERO_RS04125 +0.6 1.8 LysR family transcriptional regulator compare
HSERO_RS00335 +0.6 1.1 hypothetical protein compare
HSERO_RS02095 +0.6 0.8 Holliday junction DNA helicase RuvB compare
HSERO_RS15570 +0.6 2.1 sulfate adenylyltransferase compare
HSERO_RS07385 +0.6 0.6 hypothetical protein compare
HSERO_RS07935 +0.6 3.0 serine acetyltransferase compare
HSERO_RS02345 +0.6 3.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HSERO_RS09245 +0.6 0.7 carboxylesterase compare
HSERO_RS19225 +0.6 2.4 peroxiredoxin compare
HSERO_RS20990 +0.6 2.0 aminotransferase DegT compare


Specific Phenotypes

For 5 genes in this experiment

For stress sodium fluoride in Herbaspirillum seropedicae SmR1

For stress sodium fluoride across organisms