Experiment set2IT068 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium propionate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS18305 -6.6 -4.6 anthranilate phosphoribosyltransferase compare
RR42_RS05860 -6.4 -4.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS06485 -6.0 -5.9 chorismate synthase compare
RR42_RS19005 -6.0 -4.1 3-dehydroquinate synthase compare
RR42_RS14365 -6.0 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS18300 -5.7 -5.5 anthranilate synthase subunit II compare
RR42_RS11270 -5.3 -11.4 aconitate hydratase compare
RR42_RS11260 -5.2 -7.0 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
RR42_RS14390 -5.1 -4.0 3-isopropylmalate dehydratase compare
RR42_RS13910 -4.8 -9.2 glutamate racemase compare
RR42_RS14400 -4.7 -5.6 isopropylmalate isomerase compare
RR42_RS16255 -4.6 -9.4 sulfate adenylyltransferase compare
RR42_RS16250 -4.4 -7.9 sulfate adenylyltransferase compare
RR42_RS01385 -4.3 -5.1 5,10-methylenetetrahydrofolate reductase compare
RR42_RS01160 -4.2 -11.8 homoserine O-acetyltransferase compare
RR42_RS11255 -4.2 -9.4 Fis family transcriptional regulator compare
RR42_RS33355 -4.2 -6.3 membrane protein compare
RR42_RS16265 -4.1 -5.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS18295 -4.1 -12.1 anthranilate synthase component I compare
RR42_RS05990 -4.1 -9.1 aromatic amino acid aminotransferase compare
RR42_RS30660 -4.0 -8.5 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS04475 -4.0 -8.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16270 -4.0 -11.4 sulfite reductase compare
RR42_RS11275 -3.9 -5.9 3-methylitaconate isomerase compare
RR42_RS16245 -3.8 -6.3 uroporphyrin-III methyltransferase compare
RR42_RS30655 -3.8 -7.1 LysR family transcriptional regulator compare
RR42_RS21665 -3.8 -10.4 cobalt transporter compare
RR42_RS01290 -3.7 -8.5 thiamine biosynthesis protein ThiC compare
RR42_RS17645 -3.7 -5.9 shikimate dehydrogenase compare
RR42_RS12050 -3.6 -7.7 DNA polymerase compare
RR42_RS07365 -3.5 -3.4 pyruvate dehydrogenase compare
RR42_RS14320 -3.5 -6.4 O-succinylhomoserine sulfhydrylase compare
RR42_RS18990 -3.4 -17.2 glutamate synthase compare
RR42_RS33255 -3.3 -4.7 protein-tyrosine phosphatase compare
RR42_RS01845 -3.3 -2.1 glycerol-3-phosphate dehydrogenase compare
RR42_RS02085 -3.1 -6.5 RNA polymerase subunit sigma-54 compare
RR42_RS11790 -3.1 -8.8 phosphoenolpyruvate synthase compare
RR42_RS14360 -2.9 -1.7 tryptophan synthase subunit alpha compare
RR42_RS14385 -2.8 -5.2 3-isopropylmalate dehydrogenase compare
RR42_RS04470 -2.8 -6.5 prephenate dehydrogenase compare
RR42_RS18985 -2.7 -5.3 glutamate synthase compare
RR42_RS18850 -2.7 -3.0 preprotein translocase subunit TatC compare
RR42_RS16240 -2.6 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS33250 -2.6 -9.3 tyrosine protein kinase compare
RR42_RS15415 -2.5 -3.3 membrane protein compare
RR42_RS02705 -2.5 -3.0 Holliday junction DNA helicase RuvA compare
RR42_RS04460 -2.4 -4.3 chorismate mutase compare
RR42_RS19010 -2.4 -5.2 shikimate kinase compare
RR42_RS11770 -2.3 -3.0 cyclase compare
RR42_RS33260 -2.3 -6.7 multidrug MFS transporter compare
RR42_RS23515 -2.2 -4.2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS18855 -2.2 -4.7 preprotein translocase compare
RR42_RS00940 -2.1 -6.6 biotin synthase compare
RR42_RS21220 -2.1 -2.3 iron transporter FeoB compare
RR42_RS36400 -2.1 -1.8 hypothetical protein compare
RR42_RS01780 -2.0 -7.6 glutathione synthetase compare
RR42_RS02810 -2.0 -2.7 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS31850 -2.0 -3.3 2-keto-4-pentenoate hydratase compare
RR42_RS00925 -2.0 -9.5 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA compare
RR42_RS25625 -1.9 -2.8 LysR family transcriptional regulator compare
RR42_RS01775 -1.9 -6.8 glutamate--cysteine ligase compare
RR42_RS14080 -1.9 -8.2 RNA polymerase sigma factor RpoE compare
RR42_RS04700 -1.9 -1.8 ribonuclease G compare
RR42_RS07605 -1.9 -6.4 poly-beta-hydroxybutyrate polymerase compare
RR42_RS33240 -1.9 -11.9 GDP-L-fucose synthase compare
RR42_RS25655 -1.8 -10.4 pyruvate carboxylase compare
RR42_RS16280 -1.8 -5.3 transcriptional regulator compare
RR42_RS05420 -1.8 -6.7 membrane protein compare
RR42_RS16275 -1.8 -3.0 membrane protein compare
RR42_RS15410 -1.7 -5.6 membrane protein compare
RR42_RS04535 -1.7 -5.2 cysteine synthase compare
RR42_RS31530 -1.6 -3.7 histidine kinase compare
RR42_RS07380 -1.6 -4.1 dihydrolipoamide dehydrogenase compare
RR42_RS00420 -1.6 -3.9 hypothetical protein compare
RR42_RS31495 -1.6 -2.1 Cro/Cl family transcriptional regulator compare
RR42_RS20205 -1.6 -2.3 chromosome partitioning protein compare
RR42_RS15465 -1.6 -3.3 TonB-dependent receptor compare
RR42_RS08575 -1.5 -1.4 tail protein compare
RR42_RS19090 -1.5 -2.1 cytochrome C compare
RR42_RS07615 -1.5 -1.4 3-ketoacyl-ACP reductase compare
RR42_RS33245 -1.5 -6.4 mannose-1-phosphate guanyltransferase compare
RR42_RS04320 -1.5 -4.1 cell division protein FtsK compare
RR42_RS27045 -1.5 -2.7 hypothetical protein compare
RR42_RS17105 -1.5 -7.6 Clp protease ClpX compare
RR42_RS33235 -1.4 -6.9 GDP-mannose 4,6-dehydratase compare
RR42_RS12015 -1.4 -2.2 dihydrolipoamide acyltransferase compare
RR42_RS15470 -1.4 -1.1 biopolymer transporter ExbD compare
RR42_RS14790 -1.4 -6.2 cobalamin biosynthesis protein CobD compare
RR42_RS00930 -1.4 -6.5 8-amino-7-oxononanoate synthase compare
RR42_RS05955 -1.4 -1.4 hypothetical protein compare
RR42_RS26900 -1.4 -2.7 enoyl-CoA hydratase compare
RR42_RS08175 -1.4 -1.3 hypothetical protein compare
RR42_RS01920 -1.4 -3.5 protoheme IX farnesyltransferase compare
RR42_RS13905 -1.4 -2.1 fumarate hydratase compare
RR42_RS18140 -1.3 -1.9 MarR family transcriptional regulator compare
RR42_RS34680 -1.3 -1.9 short-chain dehydrogenase compare
RR42_RS18385 -1.3 -2.0 hypothetical protein compare
RR42_RS18020 -1.3 -2.5 ornithine acetyltransferase compare
RR42_RS34060 -1.3 -2.4 alpha/beta hydrolase compare
RR42_RS15455 -1.3 -4.6 membrane protein compare
RR42_RS13515 -1.2 -3.7 membrane protein compare
RR42_RS06630 -1.2 -2.2 integration host factor subunit alpha compare
RR42_RS15460 -1.2 -3.8 translocation protein TolB compare
RR42_RS15735 -1.2 -7.7 pyridoxal phosphate-dependent aminotransferase compare
RR42_RS18270 -1.2 -3.4 murein transglycosylase compare
RR42_RS15640 -1.2 -1.0 hypothetical protein compare
RR42_RS15890 -1.2 -5.6 heme biosynthesis protein HemY compare
RR42_RS10140 -1.2 -6.0 8-amino-7-oxononanoate synthase compare
RR42_RS24790 -1.2 -0.9 LysR family transcriptional regulator compare
RR42_RS22590 -1.2 -1.1 organic hydroperoxide resistance protein compare
RR42_RS01040 -1.2 -7.4 cobalamin biosynthesis protein CobW compare
RR42_RS01795 -1.2 -8.0 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS01380 -1.2 -1.4 membrane protein compare
RR42_RS06095 -1.2 -2.3 hypothetical protein compare
RR42_RS24605 -1.2 -7.2 TetR family transcriptional regulator compare
RR42_RS20195 -1.1 -1.2 ATPase F0F1 compare
RR42_RS21295 -1.1 -3.1 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS10135 -1.1 -5.9 biofilm PGA synthesis protein PgaC compare
RR42_RS00715 -1.1 -2.8 ferritin compare
RR42_RS32035 -1.1 -2.4 short-chain dehydrogenase compare
RR42_RS15905 -1.1 -6.0 phosphoenolpyruvate carboxylase compare
RR42_RS12590 -1.1 -1.0 50S ribosomal protein L9 compare
RR42_RS25470 -1.1 -1.8 alpha/beta hydrolase compare
RR42_RS12925 -1.1 -1.6 ATPase compare
RR42_RS33210 -1.1 -3.8 teichoic acid biosynthesis protein compare
RR42_RS15015 -1.0 -1.0 exodeoxyribonuclease VII small subunit compare
RR42_RS18380 -1.0 -2.6 hypothetical protein compare
RR42_RS23730 -1.0 -2.9 phenylacetate-CoA oxygenase subunit PaaB compare
RR42_RS08365 -1.0 -5.6 hypothetical protein compare
RR42_RS18365 -1.0 -1.4 GTP-binding protein compare
RR42_RS13620 -1.0 -1.0 ferredoxin compare
RR42_RS31080 -1.0 -2.2 hypothetical protein compare
RR42_RS21435 -1.0 -3.0 hypothetical protein compare
RR42_RS03920 -1.0 -2.2 rubredoxin compare
RR42_RS15740 -1.0 -2.3 hypothetical protein compare
RR42_RS13145 -1.0 -1.5 DNA-binding protein compare
RR42_RS34115 -1.0 -3.2 hypothetical protein compare
RR42_RS18485 -1.0 -1.1 glutaredoxin compare
RR42_RS03630 -1.0 -1.1 cold-shock protein compare
RR42_RS32445 -1.0 -2.0 shikimate dehydrogenase compare
RR42_RS15475 -1.0 -4.3 protein tolQ compare
RR42_RS01785 -1.0 -2.4 PTS fructose transporter subunit IIA compare
RR42_RS06810 -1.0 -2.6 hypothetical protein compare
RR42_RS22760 -1.0 -3.6 GntR family transcriptional regulator compare
RR42_RS15895 -1.0 -4.6 uroporphyrinogen III methyltransferase compare
RR42_RS17885 -1.0 -2.8 ABC transporter permease compare
RR42_RS16260 -1.0 -0.6 phosphoadenosine phosphosulfate reductase compare
RR42_RS18310 -1.0 -0.7 indole-3-glycerol-phosphate synthase compare
RR42_RS17865 -0.9 -4.9 N-acetyl-anhydromuranmyl-L-alanine amidase compare
RR42_RS21595 -0.9 -2.2 IclR family transcriptional regulator compare
RR42_RS02500 -0.9 -1.5 TetR family transcriptional regulator compare
RR42_RS30640 -0.9 -4.6 DNA mismatch repair protein MutT compare
RR42_RS00625 -0.9 -1.2 hypothetical protein compare
RR42_RS11795 -0.9 -2.1 PEP synthetase regulatory protein compare
RR42_RS14735 -0.9 -2.0 membrane protein compare
RR42_RS01505 -0.9 -1.5 tRNA-Cys compare
RR42_RS17390 -0.9 -3.4 ATP-dependent DNA helicase RecG compare
RR42_RS15795 -0.9 -2.8 spore coat protein compare
RR42_RS15090 -0.9 -2.8 DNA helicase compare
RR42_RS19625 -0.9 -2.7 hypothetical protein compare
RR42_RS36785 -0.9 -2.1 hypothetical protein compare
RR42_RS32600 -0.9 -2.7 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS26220 -0.9 -1.1 citrate lyase subunit beta compare
RR42_RS09760 -0.9 -1.5 hypothetical protein compare
RR42_RS15785 -0.9 -4.3 glycosyl transferase family 28 compare
RR42_RS02250 -0.9 -2.8 GntR family transcriptional regulator compare
RR42_RS05620 -0.9 -1.9 esterase compare
RR42_RS07565 -0.9 -4.0 transcription accessory protein compare
RR42_RS32085 -0.9 -0.9 hypothetical protein compare
RR42_RS37400 -0.9 -1.0 6-phosphogluconolactonase compare
RR42_RS05655 -0.9 -2.7 urease accessory protein UreD compare
RR42_RS26555 -0.9 -1.3 tRNA-Met compare
RR42_RS26580 -0.9 -1.3 hypothetical protein compare
RR42_RS16220 -0.9 -1.0 DNA polymerase III subunit chi compare
RR42_RS03095 -0.9 -1.6 succinyl-CoA synthetase subunit beta compare
RR42_RS17060 -0.9 -6.8 histidine kinase compare
RR42_RS14520 -0.8 -1.5 mobilization protein compare
RR42_RS09255 -0.8 -2.6 copper resistance protein CopQ compare
RR42_RS19440 -0.8 -2.2 DNA repair protein compare
RR42_RS19410 -0.8 -3.5 GntR family transcriptional regulator compare
RR42_RS21150 -0.8 -1.3 hypothetical protein compare
RR42_RS07890 -0.8 -1.1 hypothetical protein compare
RR42_RS32495 -0.8 -1.5 shikimate kinase compare
RR42_RS03925 -0.8 -2.0 hypothetical protein compare
RR42_RS11785 -0.8 -1.3 NfeD-like family protein 1 compare
RR42_RS25200 -0.8 -3.1 TetR family transcriptional regulator compare
RR42_RS15800 -0.8 -2.7 aldo/keto reductase compare
RR42_RS11225 -0.8 -2.1 peptide ABC transporter permease compare
RR42_RS06225 -0.8 -4.0 phosphoesterase compare
RR42_RS15050 -0.8 -4.9 DNA polymerase I compare
RR42_RS07115 -0.8 -0.9 hypothetical protein compare
RR42_RS21820 -0.8 -2.3 GntR family transcriptional regulator compare
RR42_RS21470 -0.8 -0.6 hypothetical protein compare
RR42_RS23420 -0.8 -2.0 3-oxoacyl-ACP reductase compare
RR42_RS07940 -0.8 -1.9 ABC transporter permease compare
RR42_RS13015 -0.8 -3.6 fatty acid hydroxylase compare
RR42_RS36150 -0.8 -3.3 MarR family transcriptional regulator compare
RR42_RS24040 -0.8 -1.9 hypothetical protein compare
RR42_RS05485 -0.8 -1.4 polynucleotide phosphorylase/polyadenylase compare
RR42_RS03080 -0.7 -2.1 recombinase RecA compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium propionate in Cupriavidus basilensis FW507-4G11

For carbon source Sodium propionate across organisms