Experiment set2IT068 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium propionate carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS04300 +1.5 6.6 nitrogen regulatory protein P-II 1 compare
RR42_RS28290 +1.5 7.7 DNA-binding protein compare
RR42_RS27910 +1.3 5.8 Crp/Fnr family transcriptional regulator compare
RR42_RS11200 +1.2 6.7 XRE family transcriptional regulator compare
RR42_RS30310 +1.2 2.9 signal transduction protein compare
RR42_RS29610 +1.2 1.6 cytochrome C2 compare
RR42_RS00860 +1.2 5.3 MerR family transcriptional regulator compare
RR42_RS03685 +1.1 1.9 GTP cyclohydrolase compare
RR42_RS21850 +1.1 2.7 3-oxoadipate enol-lactonase compare
RR42_RS05755 +1.0 2.4 enoyl-CoA hydratase compare
RR42_RS07330 +1.0 4.3 histidine utilization repressor compare
RR42_RS32960 +1.0 2.0 2-dehydropantoate 2-reductase compare
RR42_RS10855 +1.0 1.3 diguanylate phosphodiesterase compare
RR42_RS09290 +0.9 1.8 hypothetical protein compare
RR42_RS08550 +0.9 2.8 tail fiber protein compare
RR42_RS21380 +0.9 2.6 cupin compare
RR42_RS27120 +0.9 1.4 amino acid ABC transporter permease compare
RR42_RS20295 +0.9 1.4 alpha/beta hydrolase compare
RR42_RS27915 +0.9 2.1 acyl-CoA synthetase compare
RR42_RS29505 +0.9 2.4 hypothetical protein compare
RR42_RS05945 +0.8 2.3 thioredoxin compare
RR42_RS26080 +0.8 1.0 hypothetical protein compare
RR42_RS21690 +0.8 1.1 acetyltransferase compare
RR42_RS35780 +0.8 1.4 chemotaxis protein CheY compare
RR42_RS24510 +0.8 1.6 hypothetical protein compare
RR42_RS24550 +0.8 1.2 hypothetical protein compare
RR42_RS22180 +0.8 1.7 hypothetical protein compare
RR42_RS32555 +0.8 2.0 nitrilotriacetate monooxygenase compare
RR42_RS14860 +0.8 2.2 hypothetical protein compare
RR42_RS33910 +0.8 1.5 LysR family transcriptional regulator compare
RR42_RS03005 +0.8 2.9 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS13625 +0.8 1.9 4-hydroxybenzoyl-CoA reductase compare
RR42_RS23690 +0.8 1.8 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase compare
RR42_RS07140 +0.8 1.3 hypothetical protein compare
RR42_RS06830 +0.8 2.4 hypothetical protein compare
RR42_RS05115 +0.8 1.8 LysR family transcriptional regulator compare
RR42_RS17320 +0.8 2.7 murein hydrolase transporter LrgA compare
RR42_RS17340 +0.7 2.1 glutathione peroxidase compare
RR42_RS09580 +0.7 1.1 hypothetical protein compare
RR42_RS01705 +0.7 2.3 Fis family transcriptional regulator compare
RR42_RS16175 +0.7 1.3 enoyl-CoA hydratase compare
RR42_RS35725 +0.7 1.5 flagellar biosynthesis protein FlgB compare
RR42_RS36335 +0.7 2.2 enoyl-CoA hydratase compare
RR42_RS13850 +0.7 2.4 hypothetical protein compare
RR42_RS21040 +0.7 1.0 hypothetical protein compare
RR42_RS10150 +0.7 1.7 hypothetical protein compare
RR42_RS13420 +0.7 1.8 phosphohistidine phosphatase compare
RR42_RS33425 +0.7 1.6 cobalt-zinc-cadmium resistance protein compare
RR42_RS03020 +0.7 0.9 MarR family transcriptional regulator compare
RR42_RS07130 +0.7 1.6 hypothetical protein compare
RR42_RS34520 +0.7 0.9 transposase compare
RR42_RS04545 +0.7 4.1 deacetylase compare
RR42_RS27290 +0.7 2.1 hypothetical protein compare
RR42_RS04980 +0.7 1.5 hypothetical protein compare
RR42_RS01740 +0.7 2.4 ATP-dependent protease compare
RR42_RS16360 +0.7 1.3 transposase compare
RR42_RS28110 +0.7 1.9 phosphonate ABC transporter ATPase compare
RR42_RS36245 +0.6 2.2 excisionase compare
RR42_RS07920 +0.6 0.9 cyclophilin-like superfamily protein compare
RR42_RS00960 +0.6 1.5 prolyl-tRNA synthetase compare
RR42_RS05905 +0.6 1.8 hypothetical protein compare
RR42_RS06445 +0.6 2.3 NAD(P)H-quinone oxidoreductase compare
RR42_RS20070 +0.6 5.2 glycine dehydrogenase compare
RR42_RS13865 +0.6 0.8 hypothetical protein compare
RR42_RS05780 +0.6 2.1 hypothetical protein compare
RR42_RS37135 +0.6 1.3 cold-shock protein compare
RR42_RS27035 +0.6 2.1 hypothetical protein compare
RR42_RS32090 +0.6 1.9 hypothetical protein compare
RR42_RS08220 +0.6 0.8 hypothetical protein compare
RR42_RS10815 +0.6 2.9 methionine ABC transporter ATP-binding protein compare
RR42_RS10020 +0.6 1.7 4-methylmuconolactone methylisomerase compare
RR42_RS19645 +0.6 1.9 DNA topoisomerase compare
RR42_RS05810 +0.6 1.5 RNA polymerase sigma factor compare
RR42_RS17495 +0.6 1.6 hypothetical protein compare
RR42_RS35600 +0.6 2.3 hypothetical protein compare
RR42_RS12295 +0.6 2.9 ABC transporter permease compare
RR42_RS00360 +0.6 0.8 Asp/Glu/hydantoin racemase compare
RR42_RS30765 +0.6 0.8 tRNA-Arg compare
RR42_RS15000 +0.6 1.9 GTP cyclohydrolase compare
RR42_RS34570 +0.6 1.2 hypothetical protein compare
RR42_RS06865 +0.6 2.3 hypothetical protein compare
RR42_RS03085 +0.6 0.8 RecX family transcriptional regulator compare
RR42_RS26400 +0.6 1.7 structural protein MipA compare
RR42_RS22940 +0.6 1.7 TetR family transcriptional regulator compare
RR42_RS09060 +0.6 1.5 glucose-6-phosphate isomerase compare
RR42_RS17805 +0.6 0.7 hypothetical protein compare
RR42_RS17970 +0.6 1.3 hypothetical protein compare
RR42_RS20710 +0.6 2.2 AraC family transcriptional regulator compare
RR42_RS06935 +0.6 2.2 hypothetical protein compare
RR42_RS31300 +0.6 1.6 TetR family transcriptional regulator compare
RR42_RS13500 +0.6 2.2 membrane protein compare
RR42_RS00240 +0.6 2.0 nucleotide pyrophosphohydrolase compare
RR42_RS16565 +0.6 1.8 hypothetical protein compare
RR42_RS09085 +0.6 1.0 C4-dicarboxylate ABC transporter permease compare
RR42_RS18605 +0.6 1.8 sugar ABC transporter permease compare
RR42_RS28300 +0.6 3.5 L-threonine 3-dehydrogenase (EC 1.1.1.103) (from data) compare
RR42_RS21075 +0.6 0.8 phosphoribosyltransferase compare
RR42_RS08330 +0.6 0.9 hypothetical protein compare
RR42_RS37055 +0.6 1.8 hypothetical protein compare
RR42_RS11065 +0.5 1.1 phenylacetic acid degradation protein compare
RR42_RS27065 +0.5 1.1 hypothetical protein compare
RR42_RS13265 +0.5 1.7 GntR family transcriptional regulator compare
RR42_RS13705 +0.5 2.5 alpha/beta hydrolase compare
RR42_RS05210 +0.5 3.9 malic enzyme compare
RR42_RS28955 +0.5 2.2 transcriptional regulator compare
RR42_RS02270 +0.5 1.2 hypothetical protein compare
RR42_RS15525 +0.5 0.7 hypothetical protein compare
RR42_RS33795 +0.5 2.5 oxidase compare
RR42_RS24500 +0.5 2.9 hypothetical protein compare
RR42_RS15705 +0.5 2.0 glycosyl transferase family 1 compare
RR42_RS09780 +0.5 1.5 hypothetical protein compare
RR42_RS10690 +0.5 1.6 3-oxoadipate enol-lactonase compare
RR42_RS26105 +0.5 1.2 C4-dicarboxylate transporter compare
RR42_RS34175 +0.5 1.3 enoyl-CoA hydratase compare
RR42_RS23565 +0.5 0.7 flagellar motor switch protein G compare
RR42_RS12450 +0.5 1.8 hypothetical protein compare
RR42_RS31035 +0.5 1.6 CDP-alcohol phosphatidyltransferase compare
RR42_RS28680 +0.5 2.2 hypothetical protein compare
RR42_RS10490 +0.5 1.3 DNA-binding protein compare
RR42_RS35995 +0.5 1.4 membrane protein compare
RR42_RS09570 +0.5 1.3 hypothetical protein compare
RR42_RS11925 +0.5 2.3 hypothetical protein compare
RR42_RS30445 +0.5 1.9 cation:proton antiporter compare
RR42_RS25015 +0.5 1.2 gluconolactonase compare
RR42_RS32430 +0.5 1.6 SAM-dependent methyltransferase compare
RR42_RS08635 +0.5 1.0 terminase compare
RR42_RS08770 +0.5 0.6 2-nitropropane dioxygenase compare
RR42_RS04810 +0.5 1.2 glycine/betaine ABC transporter permease compare
RR42_RS35705 +0.5 2.5 flagellar basal body rod protein FlgF compare
RR42_RS16570 +0.5 1.7 2-nitropropane dioxygenase compare
RR42_RS23650 +0.5 1.7 flagellar protein compare
RR42_RS06890 +0.5 0.8 hypothetical protein compare
RR42_RS20525 +0.5 3.6 LuxR family transcriptional regulator compare
RR42_RS35110 +0.5 1.0 hypothetical protein compare
RR42_RS28410 +0.5 1.2 dimethylmenaquinone methyltransferase compare
RR42_RS00545 +0.5 1.9 transglutaminase compare
RR42_RS21790 +0.5 1.1 short-chain dehydrogenase compare
RR42_RS00440 +0.5 0.4 hypothetical protein compare
RR42_RS03525 +0.5 0.6 type VI secretion system effector compare
RR42_RS26455 +0.5 0.7 amino acid ABC transporter ATP-binding protein compare
RR42_RS35235 +0.5 1.1 glutathione ABC transporter permease compare
RR42_RS20630 +0.5 2.2 transcriptional regulator compare
RR42_RS17620 +0.5 2.1 phosphatidylglycerophosphatase compare
RR42_RS02210 +0.5 1.0 succinate dehydrogenase compare
RR42_RS08880 +0.5 1.3 hypothetical protein compare
RR42_RS34425 +0.5 1.6 hypothetical protein compare
RR42_RS05150 +0.5 2.7 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase compare
RR42_RS25650 +0.5 0.8 hypothetical protein compare
RR42_RS07620 +0.5 1.9 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS22230 +0.5 1.0 hypothetical protein compare
RR42_RS06125 +0.5 1.7 phosphogluconate dehydratase compare
RR42_RS32710 +0.5 1.1 hypothetical protein compare
RR42_RS32590 +0.5 0.8 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS03725 +0.5 1.6 magnesium transporter CorA compare
RR42_RS18560 +0.5 2.3 multidrug transporter MatE compare
RR42_RS30105 +0.5 1.8 taurine dioxygenase compare
RR42_RS30965 +0.5 1.1 hypothetical protein compare
RR42_RS36025 +0.5 1.1 hemagglutinin compare
RR42_RS23870 +0.5 1.4 hypothetical protein compare
RR42_RS33350 +0.5 1.0 hypothetical protein compare
RR42_RS23860 +0.5 2.3 lytic transglycosylase compare
RR42_RS34610 +0.5 1.3 hydroxyacid dehydrogenase compare
RR42_RS35955 +0.5 1.9 Fis family transcriptional regulator compare
RR42_RS24970 +0.5 2.1 acetyl-CoA acetyltransferase compare
RR42_RS03655 +0.5 2.2 hypothetical protein compare
RR42_RS23880 +0.5 0.8 hypothetical protein compare
RR42_RS29280 +0.5 0.7 hypothetical protein compare
RR42_RS31945 +0.5 1.2 enoyl-CoA hydratase compare
RR42_RS14580 +0.5 1.8 multidrug DMT transporter permease compare
RR42_RS21605 +0.5 1.3 S-adenosylhomocysteine hydrolase compare
RR42_RS03635 +0.5 1.1 trypsin-like serine protease compare
RR42_RS24785 +0.5 2.2 NAD-dependent dehydratase compare
RR42_RS13825 +0.5 1.8 hypothetical protein compare
RR42_RS16495 +0.5 1.5 branched-chain amino acid aminotransferase compare
RR42_RS11595 +0.5 1.4 hypothetical protein compare
RR42_RS13685 +0.5 1.2 cupin compare
RR42_RS03485 +0.5 1.5 type VI secretion protein compare
RR42_RS01330 +0.5 1.4 Fis family transcriptional regulator compare
RR42_RS30735 +0.5 1.0 tRNA-Met compare
RR42_RS36350 +0.5 1.2 D-amino acid oxidase compare
RR42_RS37245 +0.5 1.7 MazF family transcriptional regulator compare
RR42_RS31040 +0.5 1.5 hypothetical protein compare
RR42_RS26085 +0.5 1.1 acetoacetyl-CoA reductase compare
RR42_RS20945 +0.5 1.0 protein-tyrosine phosphatase compare
RR42_RS04685 +0.5 2.3 lipoprotein compare
RR42_RS16185 +0.5 2.1 malonyl-CoA decarboxylase compare
RR42_RS01075 +0.5 2.5 hypothetical protein compare
RR42_RS05975 +0.4 2.1 ferredoxin compare
RR42_RS30540 +0.4 2.5 hypothetical protein compare
RR42_RS22965 +0.4 1.3 3-oxoadipate CoA-transferase compare
RR42_RS07200 +0.4 1.6 hypothetical protein compare
RR42_RS32645 +0.4 0.8 2-keto-4-pentenoate hydratase compare
RR42_RS32040 +0.4 2.4 esterase compare
RR42_RS10540 +0.4 1.0 acetyl-CoA acetyltransferase compare
RR42_RS16335 +0.4 0.5 hypothetical protein compare
RR42_RS14235 +0.4 0.7 hypothetical protein compare
RR42_RS12325 +0.4 2.0 glutathione S-transferase compare
RR42_RS28005 +0.4 0.9 phosphonate/organophosphate ester transporter subunit compare
RR42_RS06910 +0.4 1.8 hypothetical protein compare
RR42_RS01410 +0.4 2.3 NAD-dependent dehydratase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium propionate in Cupriavidus basilensis FW507-4G11

For carbon source Sodium propionate across organisms