Experiment set2IT068 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without Glutamate

200 most important genes:

  gene name fitness t score description  
BBR_RS13040 -6.8 -4.7 CHAP domain-containing protein compare
BBR_RS13035 -6.0 -4.1 ABC transporter permease compare
BBR_RS14210 -5.7 -3.8 hypothetical protein compare
BBR_RS20430 -4.5 -4.4 hypothetical protein compare
BBR_RS16750 -4.4 -6.8 ParA family protein compare
BBR_RS19905 -4.4 -1.4 methionine--tRNA ligase compare
BBR_RS18745 -4.2 -1.9 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS20885 -3.7 -1.1 hypothetical protein compare
BBR_RS19055 -3.6 -2.1 ferredoxin family protein compare
BBR_RS16965 -3.5 -3.4 ATP-dependent DNA helicase compare
BBR_RS18735 -3.1 -10.7 hypothetical protein compare
BBR_RS10660 -2.9 -18.8 esterase compare
BBR_RS18695 -2.9 -5.5 PRD domain-containing protein compare
BBR_RS18725 -2.7 -3.6 ribonuclease HI compare
BBR_RS18690 -2.6 -6.2 diacylglycerol kinase compare
BBR_RS14260 -2.6 -1.5 ABC transporter ATP-binding protein compare
BBR_RS10625 -2.6 -2.5 FHA domain-containing protein compare
BBR_RS19120 -2.6 -8.3 helicase compare
BBR_RS14205 -2.5 -3.2 hypothetical protein compare
BBR_RS16020 -2.4 -2.3 hypothetical protein compare
BBR_RS19370 -2.4 -3.7 type I polyketide synthase compare
BBR_RS12545 -2.4 -4.3 DUF4012 domain-containing protein compare
BBR_RS11210 -2.4 -9.3 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS11720 -2.3 -5.2 DUF2469 domain-containing protein compare
BBR_RS11205 -2.2 -2.9 HPr family phosphocarrier protein compare
BBR_RS14215 -2.2 -4.3 peptidase compare
BBR_RS13030 -2.2 -1.9 cell division ATP-binding protein FtsE compare
BBR_RS12235 -2.1 -1.3 hypothetical protein compare
BBR_RS20435 -2.0 -1.1 CCA tRNA nucleotidyltransferase compare
BBR_RS14070 -2.0 -5.5 threonine synthase compare
BBR_RS11470 -1.9 -1.3 6-phosphogluconolactonase compare
BBR_RS20465 -1.9 -7.4 chromosome partitioning protein compare
BBR_RS19640 -1.8 -0.8 phosphoesterase compare
BBR_RS18035 -1.8 -2.7 oligoribonuclease compare
BBR_RS16425 -1.8 -3.0 DUF3071 domain-containing protein compare
BBR_RS16605 -1.8 -6.9 hypothetical protein compare
BBR_RS20450 -1.7 -10.9 murein biosynthesis integral membrane protein MurJ compare
BBR_RS15085 -1.7 -1.2 3-dehydroquinate synthase compare
BBR_RS12905 -1.7 -2.8 galactose-1-phosphate uridylyltransferase compare
BBR_RS19375 -1.7 -1.3 acyl-CoA carboxylase subunit beta compare
BBR_RS10740 -1.7 -1.5 tRNA-Gly compare
BBR_RS18570 -1.6 -9.7 phosphoserine transaminase compare
BBR_RS19645 -1.6 -6.5 RNA degradosome polyphosphate kinase compare
BBR_RS15915 -1.6 -0.9 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS13125 -1.6 -1.7 ABC transporter permease compare
BBR_RS11590 -1.5 -0.8 30S ribosomal protein S18 compare
BBR_RS11025 -1.5 -10.5 aspartate-semialdehyde dehydrogenase compare
BBR_RS14230 -1.5 -4.2 HAMP domain-containing histidine kinase compare
BBR_RS19740 -1.5 -9.7 DUF2142 domain-containing protein compare
BBR_RS19260 -1.5 -10.9 hypothetical protein compare
BBR_RS14280 -1.5 -1.6 dephospho-CoA kinase compare
BBR_RS13820 -1.4 -0.8 ATP-binding protein compare
BBR_RS11595 -1.4 -2.9 50S ribosomal protein L9 compare
BBR_RS19540 -1.4 -4.0 homoserine dehydrogenase compare
BBR_RS20635 -1.4 -3.6 hypothetical protein compare
BBR_RS10255 -1.4 -1.5 chromosomal replication initiator protein DnaA compare
BBR_RS11020 -1.4 -8.0 ACT domain-containing protein compare
BBR_RS15440 -1.4 -3.0 orotidine-5'-phosphate decarboxylase compare
BBR_RS19945 -1.4 -5.1 MarR family transcriptional regulator compare
BBR_RS19535 -1.4 -8.3 homoserine kinase compare
BBR_RS13740 -1.4 -2.7 DUF3052 domain-containing protein compare
BBR_RS19450 -1.4 -1.3 GTPase ObgE compare
BBR_RS13830 -1.3 -0.7 DUF4191 domain-containing protein compare
BBR_RS14240 -1.3 -3.7 1,4-alpha-glucan branching protein GlgB compare
BBR_RS10555 -1.3 -1.1 DUF3073 domain-containing protein compare
BBR_RS16940 -1.3 -2.6 hypothetical protein compare
BBR_RS10285 -1.2 -1.1 membrane protein compare
BBR_RS16275 -1.2 -0.9 leucine--tRNA ligase compare
BBR_RS11540 -1.2 -1.5 DUF1727 domain-containing protein compare
BBR_RS19105 -1.2 -4.3 FmdB family transcriptional regulator compare
BBR_RS17615 -1.2 -5.4 phosphoserine phosphatase SerB compare
BBR_RS18700 -1.2 -3.4 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS14610 -1.2 -2.5 DNA-binding response regulator compare
BBR_RS10720 -1.1 -6.9 PDZ domain-containing protein compare
BBR_RS12365 -1.1 -4.5 DUF177 domain-containing protein compare
BBR_RS16535 -1.1 -1.1 DUF3046 domain-containing protein compare
BBR_RS11015 -1.1 -6.5 aspartate kinase compare
BBR_RS15650 -1.1 -1.2 Holliday junction resolvase compare
BBR_RS17995 -1.1 -6.0 citrate synthase compare
BBR_RS20825 -1.1 -1.4 hypothetical protein compare
BBR_RS19795 -1.1 -8.4 hypothetical protein compare
BBR_RS14660 -1.1 -1.2 transcriptional regulator compare
BBR_RS14655 -1.1 -3.0 AraC family transcriptional regulator compare
BBR_RS15670 -1.0 -2.4 adenine phosphoribosyltransferase compare
BBR_RS16155 -1.0 -4.4 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS12310 -1.0 -1.0 signal recognition particle protein compare
BBR_RS19095 -1.0 -6.7 magnesium transporter compare
BBR_RS16255 -1.0 -1.7 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS16035 -1.0 -2.3 hypothetical protein compare
BBR_RS10905 -1.0 -1.9 nucleotide exchange factor GrpE compare
BBR_RS13805 -1.0 -1.5 hypothetical protein compare
BBR_RS15845 -1.0 -0.5 hypothetical protein compare
BBR_RS16430 -1.0 -1.9 nucleotide pyrophosphatase compare
BBR_RS12175 -1.0 -4.6 TetR/AcrR family transcriptional regulator compare
BBR_RS18755 -1.0 -1.1 30S ribosome-binding factor RbfA compare
BBR_RS12375 -1.0 -0.8 pantetheine-phosphate adenylyltransferase compare
BBR_RS16600 -1.0 -5.4 aconitate hydratase AcnA compare
BBR_RS16975 -1.0 -2.2 transcriptional repressor NrdR compare
BBR_RS11355 -1.0 -4.7 hypothetical protein compare
BBR_RS20925 -1.0 -0.8 amino acid permease compare
BBR_RS10445 -1.0 -7.6 HlyC/CorC family transporter compare
BBR_RS12645 -1.0 -3.7 acyltransferase compare
BBR_RS16905 -0.9 -3.3 hypothetical protein compare
BBR_RS19635 -0.9 -5.1 IclR family transcriptional regulator compare
BBR_RS13835 -0.9 -4.8 FAD-dependent oxidoreductase compare
BBR_RS20725 -0.9 -3.5 hypothetical protein compare
BBR_RS19700 -0.9 -8.0 ATP-dependent chaperone ClpB compare
BBR_RS14265 -0.9 -2.7 Solute-binding protein of ABC transporter system for metals compare
BBR_RS20775 -0.9 -0.7 DUF4230 domain-containing protein compare
BBR_RS12760 -0.9 -3.8 hypothetical protein compare
BBR_RS16855 -0.9 -2.9 NUDIX domain-containing protein compare
BBR_RS15675 -0.9 -3.4 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS16755 -0.9 -2.7 site-specific tyrosine recombinase XerD compare
BBR_RS16960 -0.9 -1.1 transcriptional regulator MraZ compare
BBR_RS11505 -0.9 -6.2 TetR/AcrR family transcriptional regulator compare
BBR_RS10755 -0.9 -2.7 adenylosuccinate synthase compare
BBR_RS12770 -0.9 -1.9 hypothetical protein compare
BBR_RS19475 -0.9 -6.3 AEC family transporter compare
BBR_RS17455 -0.9 -3.3 DNA-binding response regulator compare
BBR_RS19240 -0.9 -5.1 LacI family transcriptional regulator compare
BBR_RS12660 -0.9 -3.6 EpsG family protein compare
BBR_RS16970 -0.8 -4.3 phosphoglycerate dehydrogenase compare
BBR_RS12460 -0.8 -3.6 LacI family DNA-binding transcriptional regulator compare
BBR_RS11970 -0.8 -1.3 Phage transcriptional regulator compare
BBR_RS12620 -0.8 -4.5 glycosyltransferase family 1 protein compare
BBR_RS14540 -0.8 -1.5 Na+/H+ antiporter NhaA compare
BBR_RS19265 -0.8 -4.3 pyrrolidone-carboxylate peptidase compare
BBR_RS11570 -0.8 -4.4 YggS family pyridoxal phosphate-dependent enzyme compare
BBR_RS15425 -0.8 -1.1 aspartate carbamoyltransferase compare
BBR_RS12700 -0.8 -3.9 hypothetical protein compare
BBR_RS17440 -0.8 -0.7 DUF3027 domain-containing protein compare
BBR_RS16150 -0.8 -3.1 GuaB3 family IMP dehydrogenase-related protein compare
BBR_RS17905 -0.8 -7.0 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS15680 -0.8 -3.2 succinate--CoA ligase subunit alpha compare
BBR_RS17990 -0.8 -4.8 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS16555 -0.8 -0.5 DNA translocase FtsK compare
BBR_RS17120 -0.8 -2.1 DUF4186 domain-containing protein compare
BBR_RS18575 -0.8 -2.6 hypothetical protein compare
BBR_RS15695 -0.8 -2.9 membrane channel protein compare
BBR_RS14190 -0.8 -4.0 transcriptional regulator compare
BBR_RS18050 -0.8 -1.1 threonylcarbamoyl-AMP synthase compare
BBR_RS14780 -0.8 -2.2 XRE family transcriptional regulator compare
BBR_RS14665 -0.8 -3.3 MATE family efflux transporter compare
BBR_RS10900 -0.8 -1.2 molecular chaperone DnaK compare
BBR_RS15320 -0.8 -1.5 hypothetical protein compare
BBR_RS12045 -0.8 -2.5 hypothetical protein compare
BBR_RS17865 -0.8 -2.3 MarR family transcriptional regulator compare
BBR_RS19390 -0.8 -0.9 hypothetical protein compare
BBR_RS15455 -0.8 -0.7 orotate phosphoribosyltransferase compare
BBR_RS20960 -0.7 -1.0 hypothetical protein compare
BBR_RS16890 -0.7 -2.1 glucose/galactose transporter compare
BBR_RS11220 -0.7 -4.9 YbhB/YbcL family Raf kinase inhibitor-like protein compare
BBR_RS16985 -0.7 -1.9 transcriptional repressor LexA compare
BBR_RS15230 -0.7 -2.1 elongation factor 4 compare
BBR_RS21000 -0.7 -1.0 hypothetical protein compare
BBR_RS15755 -0.7 -0.7 hypothetical protein compare
BBR_RS13705 -0.7 -2.4 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS13405 -0.7 -2.1 hypothetical protein compare
BBR_RS12635 -0.7 -5.0 polysaccharide biosynthesis protein compare
BBR_RS12925 -0.7 -0.8 hypothetical protein compare
BBR_RS12775 -0.7 -2.1 hypothetical protein compare
BBR_RS12705 -0.7 -4.2 hypothetical protein compare
BBR_RS19745 -0.7 -5.4 LTA synthase family protein compare
BBR_RS15155 -0.7 -1.7 histidine triad nucleotide-binding protein compare
BBR_RS10910 -0.7 -4.7 molecular chaperone DnaJ compare
BBR_RS13505 -0.7 -2.2 DUF4391 domain-containing protein compare
BBR_RS20815 -0.7 -2.5 potassium transporter Trk compare
BBR_RS17690 -0.7 -2.4 CRISPR-associated endonuclease Cas2 compare
BBR_RS17715 -0.7 -3.0 type I-C CRISPR-associated protein Cas5 compare
BBR_RS12640 -0.7 -4.2 glycosyl transferase compare
BBR_RS13490 -0.7 -0.5 30S ribosomal protein S7 compare
BBR_RS14575 -0.7 -1.4 YraN family protein compare
BBR_RS15370 -0.6 -1.2 macro domain-containing protein compare
BBR_RS13600 -0.6 -3.3 carbohydrate-binding protein compare
BBR_RS12340 -0.6 -1.0 Arc family DNA-binding protein compare
BBR_RS10665 -0.6 -5.7 DUF2156 domain-containing protein compare
BBR_RS12625 -0.6 -3.6 glycosyltransferase family 1 protein compare
BBR_RS20795 -0.6 -0.7 cystathionine gamma-lyase compare
BBR_RS20380 -0.6 -2.7 XRE family transcriptional regulator compare
BBR_RS14740 -0.6 -2.1 YccF domain-containing protein compare
BBR_RS17460 -0.6 -2.8 TPM domain-containing protein compare
BBR_RS20630 -0.6 -2.0 transposase compare
BBR_RS13940 -0.6 -1.3 integrase compare
BBR_RS12600 -0.6 -2.1 serine acetyltransferase compare
BBR_RS19125 -0.6 -2.6 hypothetical protein compare
BBR_RS20790 -0.6 -1.6 hypothetical protein compare
BBR_RS12990 -0.6 -3.1 4-hydroxy-tetrahydrodipicolinate reductase compare
BBR_RS20870 -0.6 -0.9 hypothetical protein compare
BBR_RS15365 -0.6 -2.3 alpha/beta hydrolase compare
BBR_RS16135 -0.6 -1.0 peptide deformylase compare
BBR_RS14480 -0.6 -1.9 pyruvate formate-lyase 1-activating enzyme compare
BBR_RS14870 -0.6 -2.0 histidine phosphatase family protein compare
BBR_RS20695 -0.6 -1.1 hypothetical protein compare
BBR_RS13305 -0.6 -1.8 transcriptional repressor compare
BBR_RS16655 -0.6 -1.9 tyrosine recombinase XerC compare
BBR_RS16820 -0.6 -0.9 RNA polymerase sigma factor RpoE compare
BBR_RS12535 -0.6 -3.0 divalent metal cation transporter MntH compare
BBR_RS20810 -0.6 -1.0 pirin compare
BBR_RS12840 -0.6 -3.0 DUF4916 domain-containing protein compare
BBR_RS15385 -0.6 -1.2 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For nutrient dropout no Glutamate in Bifidobacterium breve UCC2003

For nutrient dropout no Glutamate across organisms