Experiment set2IT067 for Pantoea sp. MT58

Compare to:

Defined media control, aerobic

200 most important genes:

  gene name fitness t score description  
IAI47_15635 -7.2 -4.4 RNA polymerase-binding protein DksA compare
IAI47_16205 -5.5 -9.2 threonine synthase compare
IAI47_13690 -5.3 -1.4 cell envelope integrity protein TolA compare
IAI47_09180 -5.2 -15.9 anthranilate phosphoribosyltransferase compare
IAI47_09185 -5.2 -7.8 glutamine amidotransferase compare
IAI47_05525 -5.1 -2.4 tRNA-Ala compare
IAI47_12705 -5.1 -14.4 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_00600 -5.1 -14.0 orotate phosphoribosyltransferase compare
IAI47_10520 -5.0 -3.4 pyridoxamine 5'-phosphate oxidase compare
IAI47_09175 -5.0 -16.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_16010 -5.0 -18.5 3-isopropylmalate dehydratase large subunit compare
IAI47_09170 -4.9 -12.4 tryptophan synthase subunit beta compare
IAI47_05070 -4.9 -1.4 outer membrane protein assembly factor BamB compare
IAI47_16005 -4.9 -15.1 3-isopropylmalate dehydrogenase compare
IAI47_13695 -4.9 -1.3 colicin uptake protein TolR compare
IAI47_09190 -4.9 -16.4 anthranilate synthase component 1 compare
IAI47_05180 -4.8 -17.0 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_09165 -4.8 -9.2 tryptophan synthase subunit alpha compare
IAI47_05275 -4.8 -8.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_01050 -4.8 -22.4 ketol-acid reductoisomerase compare
IAI47_03860 -4.7 -16.7 diaminopimelate decarboxylase compare
IAI47_13745 -4.7 -3.2 2-oxoglutarate dehydrogenase E1 component compare
IAI47_12645 -4.7 -8.5 porin OmpA compare
IAI47_09360 -4.7 -2.5 peptide ABC transporter ATP-binding protein SapF compare
IAI47_13770 -4.6 -10.8 citrate synthase compare
IAI47_18040 -4.5 -20.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_14355 -4.5 -15.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_00455 -4.4 -13.9 nitrogen regulation protein NR(II) compare
IAI47_17225 -4.4 -20.1 sulfite reductase subunit alpha compare
IAI47_07060 -4.4 -10.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_04410 -4.4 -18.6 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_17185 -4.4 -3.0 RNA polymerase factor sigma-54 compare
IAI47_00450 -4.4 -17.3 nitrogen regulation protein NR(I) compare
IAI47_09010 -4.3 -10.8 formyltetrahydrofolate deformylase compare
IAI47_00910 -4.3 -11.2 acetylglutamate kinase compare
IAI47_04930 -4.3 -21.9 phosphoribosylformylglycinamidine synthase compare
IAI47_04190 -4.3 -8.1 adenylyl-sulfate kinase compare
IAI47_16870 -4.3 -9.0 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_00895 -4.3 -21.1 phosphoenolpyruvate carboxylase compare
IAI47_06235 -4.2 -10.8 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_16080 -4.2 -10.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_07075 -4.2 -10.2 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_01035 -4.2 -18.6 dihydroxy-acid dehydratase compare
IAI47_06275 -4.2 -18.2 amidophosphoribosyltransferase compare
IAI47_00900 -4.1 -12.7 acetylornithine deacetylase compare
IAI47_03725 -4.1 -11.2 phosphoglycerate dehydrogenase compare
IAI47_03855 -4.0 -8.4 LysR family transcriptional regulator compare
IAI47_00920 -4.0 -14.6 argininosuccinate lyase compare
IAI47_12215 -4.0 -12.4 dihydroorotase compare
IAI47_12865 -4.0 -13.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_04895 -4.0 -5.2 pyridoxine 5'-phosphate synthase compare
IAI47_17220 -4.0 -24.3 glutamate synthase large subunit compare
IAI47_01135 -4.0 -1.1 hypothetical protein compare
IAI47_14350 -3.9 -8.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_16215 -3.9 -16.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_18015 -3.9 -14.9 homoserine O-succinyltransferase compare
IAI47_07085 -3.8 -13.2 histidinol-phosphate transaminase compare
IAI47_14945 -3.8 -2.6 pyrroline-5-carboxylate reductase compare
IAI47_00880 -3.8 -14.7 cystathionine gamma-synthase compare
IAI47_07885 -3.7 -1.4 tRNA-Asn compare
IAI47_16350 -3.7 -10.4 phosphoserine phosphatase compare
IAI47_16120 -3.7 -11.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_18045 -3.7 -10.3 phosphoribosylamine--glycine ligase compare
IAI47_01030 -3.7 -13.1 branched-chain amino acid transaminase compare
IAI47_16015 -3.6 -8.2 3-isopropylmalate dehydratase small subunit compare
IAI47_13180 -3.6 -8.1 manganese-binding transcriptional regulator MntR compare
IAI47_07090 -3.6 -10.7 histidinol dehydrogenase compare
IAI47_16000 -3.5 -15.7 2-isopropylmalate synthase compare
IAI47_15120 -3.5 -10.0 glutamate 5-kinase compare
IAI47_00780 -3.5 -3.4 6-phosphofructokinase compare
IAI47_00870 -3.5 -1.3 50S ribosomal protein L31 compare
IAI47_07070 -3.5 -6.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_11450 -3.5 -6.7 ankyrin repeat domain-containing protein compare
IAI47_00460 -3.4 -2.4 glutamate--ammonia ligase compare
IAI47_07065 -3.4 -10.0 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_16830 -3.3 -13.0 ornithine carbamoyltransferase compare
IAI47_12915 -3.3 -9.8 leucine-responsive transcriptional regulator Lrp compare
IAI47_00300 -3.3 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_07095 -3.3 -8.5 ATP phosphoribosyltransferase compare
IAI47_18830 -3.3 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_12060 -3.3 -5.4 beta-ketoacyl-ACP synthase II compare
IAI47_09240 -3.2 -4.3 HTH-type transcriptional regulator CysB compare
IAI47_03375 -3.2 -13.2 peptide chain release factor 3 compare
IAI47_18315 -3.2 -7.3 HTH-type transcriptional regulator MetR compare
IAI47_02695 -3.2 -10.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_03975 -3.2 -11.5 amino-acid N-acetyltransferase compare
IAI47_15810 -3.1 -2.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_16860 -3.1 -11.0 aspartate carbamoyltransferase compare
IAI47_18240 -3.1 -2.1 NAD(P)H-flavin reductase compare
IAI47_04150 -3.0 -11.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_04155 -3.0 -11.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_13900 -3.0 -13.6 asparagine synthase B compare
IAI47_09275 -3.0 -8.1 orotidine-5'-phosphate decarboxylase compare
IAI47_16115 -2.9 -15.1 carbamoyl-phosphate synthase large subunit compare
IAI47_07080 -2.9 -8.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_00905 -2.9 -9.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_02400 -2.9 -1.4 YhdT family protein compare
IAI47_01365 -2.9 -2.0 inorganic phosphate transporter PitA compare
IAI47_04175 -2.9 -9.9 uroporphyrinogen-III C-methyltransferase compare
IAI47_10320 -2.8 -2.4 Rrf2 family transcriptional regulator compare
IAI47_16210 -2.8 -8.2 homoserine kinase compare
IAI47_15115 -2.8 -10.1 glutamate-5-semialdehyde dehydrogenase compare
IAI47_00515 -2.8 -2.6 DNA-directed RNA polymerase subunit omega compare
IAI47_15110 -2.7 -6.2 chromophore lyase compare
IAI47_01040 -2.7 -7.2 threonine ammonia-lyase, biosynthetic compare
IAI47_13765 -2.6 -2.6 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_04835 -2.6 -8.5 ATP-dependent RNA helicase SrmB compare
IAI47_11760 -2.6 -1.9 TonB-dependent siderophore receptor compare
IAI47_13685 -2.5 -2.1 Tol-Pal system protein TolB compare
IAI47_07165 -2.5 -2.8 exodeoxyribonuclease I compare
IAI47_00735 -2.5 -2.5 protein-export chaperone SecB compare
IAI47_18530 -2.4 -2.5 thioredoxin TrxA compare
IAI47_00760 -2.4 -3.8 envelope stress response regulator transcription factor CpxR compare
IAI47_00465 -2.4 -4.3 ribosome-dependent GTPase TypA compare
IAI47_00655 -2.4 -7.7 glycosyltransferase family 4 protein compare
IAI47_13050 -2.3 -4.2 YbjN domain-containing protein compare
IAI47_19690 -2.3 -1.4 hypothetical protein compare
IAI47_12790 -2.3 -0.9 chromosome partition protein MukE compare
IAI47_16220 -2.3 -5.0 thr operon leader peptide compare
IAI47_00915 -2.3 -9.9 argininosuccinate synthase compare
IAI47_13155 -2.3 -2.7 H-NS histone family protein compare
IAI47_15970 -2.2 -2.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_08085 -2.2 -4.6 helix-turn-helix domain-containing protein compare
IAI47_15540 -2.2 -8.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_17965 -2.2 -8.1 glucose-6-phosphate isomerase compare
IAI47_04160 -2.1 -7.5 phosphoadenylyl-sulfate reductase compare
IAI47_05440 -2.1 -7.3 cysteine synthase A compare
IAI47_18215 -2.0 -1.3 Trk system potassium transporter TrkH compare
IAI47_13310 -2.0 -4.4 MerR family transcriptional regulator compare
IAI47_17120 -2.0 -2.6 BolA family iron metabolism protein IbaG compare
IAI47_06980 -1.9 -2.9 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_11310 -1.9 -3.5 redox-regulated ATPase YchF compare
IAI47_06390 -1.8 -2.7 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_10775 -1.8 -3.8 ribonuclease T compare
IAI47_01955 -1.8 -7.6 aspartate aminotransferase family protein compare
IAI47_17560 -1.8 -1.6 ROK family transcriptional regulator compare
IAI47_04185 -1.8 -9.2 sulfate adenylyltransferase subunit CysN compare
IAI47_16085 -1.8 -1.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_11375 -1.8 -1.5 hypothetical protein compare
IAI47_13755 -1.8 -6.0 succinate dehydrogenase flavoprotein subunit compare
IAI47_04400 -1.8 -5.0 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_02090 -1.7 -3.5 elongation factor Tu compare
IAI47_06365 -1.7 -3.6 NADH-quinone oxidoreductase subunit B compare
IAI47_05390 -1.7 -3.6 sulfate/thiosulfate ABC transporter permease CysT compare
IAI47_14690 -1.6 -4.5 cytochrome o ubiquinol oxidase subunit III compare
IAI47_18410 -1.6 -2.5 diaminopimelate epimerase compare
IAI47_01045 -1.6 -4.0 HTH-type transcriptional activator IlvY compare
IAI47_04180 -1.6 -6.8 sulfate adenylyltransferase subunit CysD compare
IAI47_05465 -1.6 -3.8 bile acid:sodium symporter compare
IAI47_04120 -1.6 -9.3 GTP diphosphokinase compare
IAI47_16950 -1.6 -2.8 GIY-YIG nuclease family protein compare
IAI47_03595 -1.6 -3.4 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_06245 -1.6 -2.3 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_03680 -1.5 -6.6 transketolase compare
IAI47_03610 -1.5 -2.5 YqgE/AlgH family protein compare
IAI47_06380 -1.5 -2.7 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_09265 -1.5 -2.3 LapA family protein compare
IAI47_11415 -1.5 -1.6 hypothetical protein compare
IAI47_17005 -1.5 -5.8 polyribonucleotide nucleotidyltransferase compare
IAI47_21690 -1.5 -6.9 TetR/AcrR family transcriptional regulator compare
IAI47_09040 -1.4 -1.8 NAD-dependent epimerase compare
IAI47_12175 -1.4 -2.3 anti-sigma-28 factor FlgM compare
IAI47_18145 -1.4 -1.5 elongation factor Tu compare
IAI47_05395 -1.4 -6.8 sulfate/thiosulfate ABC transporter permease CysW compare
IAI47_02585 -1.4 -2.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_06355 -1.4 -5.6 transcriptional regulator LrhA compare
IAI47_09245 -1.4 -4.5 YmiA family putative membrane protein compare
IAI47_07010 -1.4 -2.2 ABC transporter permease compare
IAI47_13635 -1.3 -5.2 quinolinate synthase NadA compare
IAI47_16095 -1.3 -2.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_04870 -1.3 -3.3 elongation factor 4 compare
IAI47_17385 -1.3 -2.7 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_06405 -1.3 -2.5 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_13750 -1.3 -2.7 succinate dehydrogenase iron-sulfur subunit compare
IAI47_06370 -1.3 -3.3 NADH-quinone oxidoreductase subunit C/D compare
IAI47_04425 -1.3 -5.4 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_10925 -1.2 -2.2 EAL domain-containing protein compare
IAI47_14700 -1.2 -4.3 protoheme IX farnesyltransferase compare
IAI47_17645 -1.2 -1.6 hypothetical protein compare
IAI47_13740 -1.2 -0.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_07930 -1.2 -1.4 DUF2158 domain-containing protein compare
IAI47_18815 -1.2 -4.7 4'-phosphopantetheinyl transferase superfamily protein compare
IAI47_05420 -1.2 -0.7 PTS glucose transporter subunit IIA compare
IAI47_02515 -1.2 -2.2 transcriptional regulator ArgR compare
IAI47_00755 -1.2 -5.7 envelope stress sensor histidine kinase CpxA compare
IAI47_05175 -1.2 -5.1 phosphoribosylglycinamide formyltransferase compare
IAI47_09210 -1.2 -4.5 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_15665 -1.2 -5.5 aspartate 1-decarboxylase compare
IAI47_18055 -1.2 -2.9 DNA-binding protein HU-alpha compare
IAI47_11200 -1.2 -2.1 DotU family type IV/VI secretion system protein compare
IAI47_07475 -1.1 -0.9 hypothetical protein compare
IAI47_16990 -1.1 -1.9 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_10145 -1.1 -2.2 winged helix-turn-helix transcriptional regulator compare
IAI47_06475 -1.1 -3.2 transcriptional regulator RcsB compare
IAI47_10790 -1.1 -2.7 YnhF family membrane protein compare
IAI47_12920 -1.1 -2.2 thioredoxin-disulfide reductase compare
IAI47_04505 -1.1 -4.5 transcriptional repressor MprA compare
IAI47_05035 -1.1 -1.7 nucleoside-diphosphate kinase compare
IAI47_13885 -1.1 -1.1 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_03685 -1.0 -4.2 erythrose-4-phosphate dehydrogenase compare


Specific Phenotypes

For 1 genes in this experiment