Experiment set2IT067 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS18305 -6.5 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS05860 -6.4 -4.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14390 -6.2 -4.3 3-isopropylmalate dehydratase compare
RR42_RS30655 -6.2 -4.3 LysR family transcriptional regulator compare
RR42_RS06485 -6.2 -6.0 chorismate synthase compare
RR42_RS14365 -6.0 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS33255 -5.9 -3.9 protein-tyrosine phosphatase compare
RR42_RS19005 -5.9 -4.0 3-dehydroquinate synthase compare
RR42_RS14400 -5.6 -5.5 isopropylmalate isomerase compare
RR42_RS18300 -5.6 -5.4 anthranilate synthase subunit II compare
RR42_RS16265 -5.5 -5.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS16250 -5.2 -7.9 sulfate adenylyltransferase compare
RR42_RS04535 -4.8 -5.7 cysteine synthase compare
RR42_RS14385 -4.8 -7.3 3-isopropylmalate dehydrogenase compare
RR42_RS16255 -4.7 -8.6 sulfate adenylyltransferase compare
RR42_RS16270 -4.6 -10.3 sulfite reductase compare
RR42_RS19010 -4.6 -8.3 shikimate kinase compare
RR42_RS18295 -4.6 -12.6 anthranilate synthase component I compare
RR42_RS04475 -4.5 -11.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS01160 -4.5 -8.4 homoserine O-acetyltransferase compare
RR42_RS18850 -4.5 -4.3 preprotein translocase subunit TatC compare
RR42_RS14320 -4.3 -5.5 O-succinylhomoserine sulfhydrylase compare
RR42_RS16280 -4.2 -8.0 transcriptional regulator compare
RR42_RS33240 -4.2 -17.5 GDP-L-fucose synthase compare
RR42_RS16275 -4.2 -4.9 membrane protein compare
RR42_RS30660 -4.1 -8.1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS05990 -3.9 -8.9 aromatic amino acid aminotransferase compare
RR42_RS33260 -3.9 -8.2 multidrug MFS transporter compare
RR42_RS17645 -3.7 -7.9 shikimate dehydrogenase compare
RR42_RS24930 -3.7 -1.6 AraC family transcriptional regulator compare
RR42_RS15890 -3.5 -9.8 heme biosynthesis protein HemY compare
RR42_RS18990 -3.4 -15.4 glutamate synthase compare
RR42_RS33235 -3.2 -8.9 GDP-mannose 4,6-dehydratase compare
RR42_RS01845 -3.2 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS19885 -3.2 -2.1 aminoglycoside transporter compare
RR42_RS33245 -3.2 -9.3 mannose-1-phosphate guanyltransferase compare
RR42_RS33355 -3.1 -6.5 membrane protein compare
RR42_RS16245 -3.1 -4.9 uroporphyrin-III methyltransferase compare
RR42_RS07555 -3.1 -3.4 potassium transporter Kup compare
RR42_RS33250 -3.0 -7.2 tyrosine protein kinase compare
RR42_RS04460 -3.0 -6.2 chorismate mutase compare
RR42_RS14360 -3.0 -1.7 tryptophan synthase subunit alpha compare
RR42_RS01290 -2.9 -5.4 thiamine biosynthesis protein ThiC compare
RR42_RS19090 -2.9 -2.8 cytochrome C compare
RR42_RS12925 -2.9 -3.8 ATPase compare
RR42_RS18995 -2.9 -9.0 transposase compare
RR42_RS01385 -2.8 -2.6 5,10-methylenetetrahydrofolate reductase compare
RR42_RS13910 -2.7 -8.9 glutamate racemase compare
RR42_RS16240 -2.6 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS20775 -2.6 -1.6 hypothetical protein compare
RR42_RS15895 -2.6 -7.1 uroporphyrinogen III methyltransferase compare
RR42_RS18985 -2.5 -5.2 glutamate synthase compare
RR42_RS01920 -2.4 -4.2 protoheme IX farnesyltransferase compare
RR42_RS30640 -2.4 -6.2 DNA mismatch repair protein MutT compare
RR42_RS12040 -2.4 -10.6 MFS transporter compare
RR42_RS01775 -2.4 -6.3 glutamate--cysteine ligase compare
RR42_RS07365 -2.3 -3.7 pyruvate dehydrogenase compare
RR42_RS02500 -2.3 -3.4 TetR family transcriptional regulator compare
RR42_RS15410 -2.3 -4.9 membrane protein compare
RR42_RS19045 -2.2 -1.7 frataxin compare
RR42_RS04470 -2.2 -6.2 prephenate dehydrogenase compare
RR42_RS02085 -2.2 -6.4 RNA polymerase subunit sigma-54 compare
RR42_RS33210 -2.1 -5.2 teichoic acid biosynthesis protein compare
RR42_RS22230 -2.1 -2.1 hypothetical protein compare
RR42_RS36450 -2.1 -1.7 acyl dehydratase compare
RR42_RS20205 -2.1 -3.0 chromosome partitioning protein compare
RR42_RS21220 -2.0 -2.2 iron transporter FeoB compare
RR42_RS11770 -2.0 -2.6 cyclase compare
RR42_RS15415 -2.0 -2.6 membrane protein compare
RR42_RS19695 -2.0 -3.4 cytochrome C protein compare
RR42_RS07125 -2.0 -2.5 hypothetical protein compare
RR42_RS17105 -1.9 -8.8 Clp protease ClpX compare
RR42_RS18930 -1.9 -5.6 BolA family transcriptional regulator compare
RR42_RS11795 -1.9 -3.5 PEP synthetase regulatory protein compare
RR42_RS17720 -1.9 -3.2 sugar kinase compare
RR42_RS18855 -1.8 -3.4 preprotein translocase compare
RR42_RS01380 -1.8 -1.8 membrane protein compare
RR42_RS26935 -1.7 -4.3 farnesyl-diphosphate farnesyltransferase compare
RR42_RS11280 -1.7 -2.2 phenylacetic acid degradation protein compare
RR42_RS26540 -1.7 -1.6 3-phosphoglycerate dehydrogenase compare
RR42_RS32740 -1.7 -1.4 enoyl-CoA hydratase compare
RR42_RS05955 -1.7 -1.6 hypothetical protein compare
RR42_RS25785 -1.7 -2.3 TetR family transcriptional regulator compare
RR42_RS07380 -1.6 -3.8 dihydrolipoamide dehydrogenase compare
RR42_RS00715 -1.5 -3.7 ferritin compare
RR42_RS31330 -1.5 -1.8 LysR family transcriptional regulator compare
RR42_RS07565 -1.5 -6.4 transcription accessory protein compare
RR42_RS08180 -1.5 -1.7 hypothetical protein compare
RR42_RS12305 -1.5 -1.5 hypothetical protein compare
RR42_RS12050 -1.5 -5.5 DNA polymerase compare
RR42_RS33215 -1.5 -8.4 transferase compare
RR42_RS35875 -1.5 -7.1 UDP-galactose-4-epimerase compare
RR42_RS24605 -1.5 -5.9 TetR family transcriptional regulator compare
RR42_RS04700 -1.4 -1.5 ribonuclease G compare
RR42_RS32600 -1.4 -4.3 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS06890 -1.4 -1.4 hypothetical protein compare
RR42_RS14790 -1.4 -7.2 cobalamin biosynthesis protein CobD compare
RR42_RS17055 -1.4 -7.6 LuxR family transcriptional regulator compare
RR42_RS13905 -1.4 -4.3 fumarate hydratase compare
RR42_RS17060 -1.4 -9.7 histidine kinase compare
RR42_RS21000 -1.3 -2.6 glycosyl transferase compare
RR42_RS18825 -1.3 -3.9 ubiquinol-cytochrome C reductase compare
RR42_RS21665 -1.3 -5.4 cobalt transporter compare
RR42_RS06095 -1.3 -3.3 hypothetical protein compare
RR42_RS07605 -1.2 -3.9 poly-beta-hydroxybutyrate polymerase compare
RR42_RS31530 -1.2 -3.0 histidine kinase compare
RR42_RS04320 -1.2 -4.0 cell division protein FtsK compare
RR42_RS03095 -1.2 -1.8 succinyl-CoA synthetase subunit beta compare
RR42_RS09630 -1.2 -2.6 hypothetical protein compare
RR42_RS17390 -1.2 -5.0 ATP-dependent DNA helicase RecG compare
RR42_RS34215 -1.2 -1.3 ferredoxin compare
RR42_RS32585 -1.2 -2.0 cytochrome C oxidase compare
RR42_RS17050 -1.2 -4.9 phosphoribosylglycinamide formyltransferase compare
RR42_RS36120 -1.2 -4.9 LysR family transcriptional regulator compare
RR42_RS19485 -1.2 -1.0 general secretion pathway protein GspH compare
RR42_RS03080 -1.2 -2.0 recombinase RecA compare
RR42_RS29785 -1.1 -2.0 hypothetical protein compare
RR42_RS19555 -1.1 -1.8 hypothetical protein compare
RR42_RS18820 -1.1 -5.0 cytochrome B compare
RR42_RS21435 -1.1 -2.1 hypothetical protein compare
RR42_RS01780 -1.1 -5.0 glutathione synthetase compare
RR42_RS02210 -1.1 -0.9 succinate dehydrogenase compare
RR42_RS02310 -1.1 -2.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS15015 -1.1 -1.1 exodeoxyribonuclease VII small subunit compare
RR42_RS26455 -1.1 -1.1 amino acid ABC transporter ATP-binding protein compare
RR42_RS12055 -1.1 -3.3 acyltransferase compare
RR42_RS01915 -1.1 -4.0 cytochrome C oxidase subunit I compare
RR42_RS06875 -1.0 -2.0 hypothetical protein compare
RR42_RS36570 -1.0 -1.4 prevent-host-death protein compare
RR42_RS12550 -1.0 -3.1 hypothetical protein compare
RR42_RS19065 -1.0 -6.7 transcriptional regulator compare
RR42_RS18140 -1.0 -1.4 MarR family transcriptional regulator compare
RR42_RS04015 -1.0 -1.4 RNA polymerase sigma factor compare
RR42_RS18815 -1.0 -3.6 cytochrome C compare
RR42_RS16220 -1.0 -1.2 DNA polymerase III subunit chi compare
RR42_RS20195 -1.0 -1.0 ATPase F0F1 compare
RR42_RS33195 -1.0 -6.4 UDP-sugar lipid carrier transferase compare
RR42_RS01260 -1.0 -5.0 lauroyl acyltransferase compare
RR42_RS03415 -1.0 -4.6 N-acetylmuramoyl-L-alanine amidase compare
RR42_RS28290 -1.0 -3.9 DNA-binding protein compare
RR42_RS23565 -1.0 -1.0 flagellar motor switch protein G compare
RR42_RS04895 -1.0 -6.1 serine/threonine protein phosphatase compare
RR42_RS31285 -1.0 -1.7 XRE family transcriptional regulator compare
RR42_RS13025 -1.0 -3.3 hypothetical protein compare
RR42_RS13015 -1.0 -5.0 fatty acid hydroxylase compare
RR42_RS18270 -1.0 -2.7 murein transglycosylase compare
RR42_RS17375 -1.0 -1.2 hypothetical protein compare
RR42_RS17355 -1.0 -0.7 hypothetical protein compare
RR42_RS14080 -1.0 -6.2 RNA polymerase sigma factor RpoE compare
RR42_RS08365 -1.0 -3.7 hypothetical protein compare
RR42_RS17620 -1.0 -2.6 phosphatidylglycerophosphatase compare
RR42_RS36105 -0.9 -2.8 MarR family transcriptional regulator compare
RR42_RS29865 -0.9 -1.5 hypothetical protein compare
RR42_RS02775 -0.9 -2.3 molecular chaperone SurA compare
RR42_RS18425 -0.9 -1.0 hypothetical protein compare
RR42_RS15090 -0.9 -3.2 DNA helicase compare
RR42_RS19085 -0.9 -1.1 cytochrome C biogenesis protein ResB compare
RR42_RS02810 -0.9 -1.2 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS15745 -0.9 -4.2 group1 glycosyl transferase compare
RR42_RS02250 -0.9 -2.7 GntR family transcriptional regulator compare
RR42_RS32595 -0.9 -3.5 cytochrome o ubiquinol oxidase subunit I compare
RR42_RS02705 -0.9 -1.7 Holliday junction DNA helicase RuvA compare
RR42_RS18725 -0.9 -1.3 hypothetical protein compare
RR42_RS02045 -0.9 -5.8 GTPase compare
RR42_RS27160 -0.9 -2.0 acetyl-CoA acetyltransferase compare
RR42_RS13040 -0.9 -3.1 iron transporter compare
RR42_RS15710 -0.9 -4.8 LPS biosynthesis protein compare
RR42_RS22495 -0.9 -1.8 hypothetical protein compare
RR42_RS35720 -0.9 -2.2 flagellar basal body rod protein FlgC compare
RR42_RS34115 -0.9 -2.9 hypothetical protein compare
RR42_RS20440 -0.9 -1.2 histidine kinase compare
RR42_RS26350 -0.9 -1.6 bleomycin resistance protein compare
RR42_RS15475 -0.9 -3.8 protein tolQ compare
RR42_RS03370 -0.8 -1.1 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS26580 -0.8 -1.3 hypothetical protein compare
RR42_RS21595 -0.8 -1.3 IclR family transcriptional regulator compare
RR42_RS35450 -0.8 -1.7 hypothetical protein compare
RR42_RS06925 -0.8 -1.2 hypothetical protein compare
RR42_RS29235 -0.8 -1.9 hypothetical protein compare
RR42_RS29280 -0.8 -1.0 hypothetical protein compare
RR42_RS09920 -0.8 -3.4 TetR family transcriptional regulator compare
RR42_RS25765 -0.8 -1.8 hypothetical protein compare
RR42_RS11655 -0.8 -1.2 heat-shock protein Hsp20 compare
RR42_RS21820 -0.8 -3.1 GntR family transcriptional regulator compare
RR42_RS14530 -0.8 -2.0 2-hydroxyacid dehydrogenase compare
RR42_RS02785 -0.8 -2.3 dimethyladenosine transferase compare
RR42_RS25715 -0.8 -3.3 hypothetical protein compare
RR42_RS10365 -0.8 -1.8 ABC transporter compare
RR42_RS12350 -0.8 -3.0 alkylphosphonate utilization protein compare
RR42_RS04280 -0.8 -2.3 aldehyde dehydrogenase compare
RR42_RS13145 -0.8 -1.3 DNA-binding protein compare
RR42_RS01255 -0.8 -4.0 lauroyl acyltransferase compare
RR42_RS21150 -0.8 -1.1 hypothetical protein compare
RR42_RS01505 -0.8 -1.2 tRNA-Cys compare
RR42_RS15420 -0.7 -1.5 hypothetical protein compare
RR42_RS08000 -0.7 -0.9 hypothetical protein compare
RR42_RS22575 -0.7 -1.0 hypothetical protein compare
RR42_RS28885 -0.7 -2.4 membrane protein compare
RR42_RS19445 -0.7 -2.6 TetR family transcriptional regulator compare
RR42_RS31830 -0.7 -1.1 short-chain dehydrogenase compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in carbon source experiments

For carbon source Sodium succinate dibasic hexahydrate across organisms