Experiment set2IT067 for Burkholderia phytofirmans PsJN

Compare to:

LB, 30C

200 most important genes:

  gene name fitness t score description  
BPHYT_RS23840 -4.1 -5.9 methyltransferase compare
BPHYT_RS16710 -3.7 -2.5 LysR family transcriptional regulator compare
BPHYT_RS01625 -3.1 -5.2 chemotaxis protein CheY compare
BPHYT_RS14855 -2.8 -2.8 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS03725 -2.6 -2.9 serine hydroxymethyltransferase compare
BPHYT_RS14865 -2.6 -6.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS06685 -2.5 -4.1 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS02865 -2.5 -5.1 hypothetical protein compare
BPHYT_RS17095 -2.4 -5.4 proline--tRNA ligase compare
BPHYT_RS16255 -2.3 -7.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS03640 -2.2 -5.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS08850 -2.2 -3.7 transcriptional regulator compare
BPHYT_RS16835 -2.1 -8.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS36275 -2.1 -2.0 hypothetical protein compare
BPHYT_RS33920 -2.1 -8.5 type II citrate synthase compare
BPHYT_RS16245 -2.0 -8.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17520 -1.9 -6.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS16270 -1.9 -6.4 phosphoglycerate kinase compare
BPHYT_RS15615 -1.8 -4.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS01485 -1.8 -1.4 histidine kinase compare
BPHYT_RS06610 -1.8 -3.1 triosephosphate isomerase compare
BPHYT_RS02610 -1.8 -6.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16675 -1.8 -2.9 dihydroorotase compare
BPHYT_RS15620 -1.7 -3.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS06530 -1.7 -2.7 membrane protein compare
BPHYT_RS02590 -1.7 -6.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS04290 -1.6 -2.1 glycosyl transferase family 2 compare
BPHYT_RS09515 -1.6 -4.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14550 -1.6 -1.7 tRNA-Asn compare
BPHYT_RS16840 -1.6 -3.5 transketolase compare
BPHYT_RS12465 -1.6 -5.2 inositol monophosphatase compare
BPHYT_RS12845 -1.6 -12.9 ATPase compare
BPHYT_RS12990 -1.5 -2.7 iron transporter compare
BPHYT_RS15710 -1.5 -1.7 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS08565 -1.5 -2.0 dihydroorotate dehydrogenase compare
BPHYT_RS04285 -1.4 -2.4 rhamnosyltransferase compare
BPHYT_RS16175 -1.4 -3.1 hemolysin D compare
BPHYT_RS10095 -1.4 -2.2 integrase compare
BPHYT_RS23650 -1.4 -1.2 hypothetical protein compare
BPHYT_RS13605 -1.4 -1.2 tRNA-Pro compare
BPHYT_RS02975 -1.4 -2.6 membrane protein compare
BPHYT_RS12280 -1.3 -1.7 RNA helicase compare
BPHYT_RS16180 -1.3 -1.2 TetR family transcriptional regulator compare
BPHYT_RS22910 -1.3 -1.6 hypothetical protein compare
BPHYT_RS17530 -1.3 -7.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS23230 -1.3 -1.8 histidine kinase compare
BPHYT_RS06405 -1.3 -7.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS20235 -1.3 -3.0 iron ABC transporter compare
BPHYT_RS09315 -1.3 -1.3 chemotaxis protein CheY compare
BPHYT_RS23270 -1.3 -1.8 enoyl-CoA hydratase compare
BPHYT_RS09480 -1.3 -1.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS18590 -1.2 -1.2 hypothetical protein compare
BPHYT_RS12510 -1.2 -2.2 RNA-binding protein compare
BPHYT_RS09280 -1.2 -1.3 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS02005 -1.2 -2.5 diguanylate phosphodiesterase compare
BPHYT_RS13200 -1.2 -2.2 molybdopterin binding oxidoreductase compare
BPHYT_RS34810 -1.2 -3.5 RND transporter compare
BPHYT_RS17920 -1.2 -1.7 protein CyaY compare
BPHYT_RS15415 -1.2 -9.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS06175 -1.2 -4.9 LPS biosynthesis compare
BPHYT_RS12840 -1.2 -3.2 pyruvate dehydrogenase compare
BPHYT_RS34805 -1.1 -5.6 ABC transporter compare
BPHYT_RS21860 -1.1 -1.4 hypothetical protein compare
BPHYT_RS02130 -1.1 -2.3 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS04455 -1.1 -1.5 glycosyl transferase compare
BPHYT_RS23475 -1.1 -2.0 luciferase compare
BPHYT_RS10065 -1.1 -1.8 cytochrome C oxidase subunit I compare
BPHYT_RS14400 -1.1 -3.1 anti-sigma factor compare
BPHYT_RS14845 -1.1 -2.9 cysteine synthase compare
BPHYT_RS16350 -1.1 -2.7 hypothetical protein compare
BPHYT_RS12535 -1.1 -1.4 membrane protein compare
BPHYT_RS02965 -1.0 -3.0 membrane protein compare
BPHYT_RS04370 -1.0 -1.9 glycosyl transferase compare
BPHYT_RS34815 -1.0 -2.2 ABC transporter compare
BPHYT_RS08765 -1.0 -1.1 ABC transporter ATP-binding protein compare
BPHYT_RS35310 -1.0 -1.7 GCN5 family N-acetyltransferase compare
BPHYT_RS06375 -1.0 -3.4 ribonuclease compare
BPHYT_RS30795 -1.0 -1.4 short-chain dehydrogenase compare
BPHYT_RS16290 -1.0 -1.2 hypothetical protein compare
BPHYT_RS06400 -1.0 -3.8 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS01620 -1.0 -5.2 sensor histidine kinase compare
BPHYT_RS17890 -1.0 -2.0 shikimate kinase compare
BPHYT_RS17885 -1.0 -3.9 3-dehydroquinate synthase compare
BPHYT_RS18705 -1.0 -1.9 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS26465 -1.0 -1.3 metallophosphoesterase compare
BPHYT_RS09330 -1.0 -6.1 phytoene synthase compare
BPHYT_RS08955 -0.9 -3.3 homoserine dehydrogenase compare
BPHYT_RS31635 -0.9 -2.7 choline dehydrogenase compare
BPHYT_RS29520 -0.9 -1.0 hypothetical protein compare
BPHYT_RS14380 -0.9 -3.9 elongation factor 4 compare
BPHYT_RS15545 -0.9 -1.8 isoaspartyl peptidase compare
BPHYT_RS22930 -0.9 -1.8 type II secretion system protein compare
BPHYT_RS14140 -0.9 -2.4 phosphate transporter permease subunit PstC compare
BPHYT_RS17905 -0.9 -2.2 fimbrial assembly family protein compare
BPHYT_RS34560 -0.9 -2.0 hypothetical protein compare
BPHYT_RS31345 -0.9 -2.2 malonate transporter compare
BPHYT_RS26025 -0.9 -1.0 hypothetical protein compare
BPHYT_RS02725 -0.9 -3.1 GntR family transcriptional regulator compare
BPHYT_RS28065 -0.9 -1.0 hypothetical protein compare
BPHYT_RS01425 -0.9 -3.4 3-phosphoglycerate dehydrogenase compare
BPHYT_RS15190 -0.9 -1.8 acyl carrier protein compare
BPHYT_RS04335 -0.9 -1.4 membrane protein compare
BPHYT_RS03645 -0.9 -1.8 tRNA dimethylallyltransferase compare
BPHYT_RS14880 -0.9 -2.2 integration host factor subunit beta compare
BPHYT_RS33840 -0.9 -4.7 amidophosphoribosyltransferase compare
BPHYT_RS35885 -0.9 -2.6 hypothetical protein compare
BPHYT_RS12925 -0.8 -1.1 exodeoxyribonuclease III compare
BPHYT_RS20095 -0.8 -1.0 transcriptional regulator compare
BPHYT_RS02860 -0.8 -1.1 membrane protein compare
BPHYT_RS24565 -0.8 -2.2 membrane protein compare
BPHYT_RS17100 -0.8 -4.1 RNA pyrophosphohydrolase compare
BPHYT_RS03730 -0.8 -2.2 transcriptional repressor NrdR compare
BPHYT_RS06985 -0.8 -2.5 fumarate hydratase compare
BPHYT_RS19760 -0.8 -3.5 AraC family transcriptional regulator compare
BPHYT_RS04385 -0.8 -2.9 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS02595 -0.8 -1.2 sulfurtransferase compare
BPHYT_RS36090 -0.8 -1.7 hypothetical protein compare
BPHYT_RS09650 -0.8 -2.0 hypothetical protein compare
BPHYT_RS25780 -0.8 -1.2 DeoR faimly transcriptional regulator compare
BPHYT_RS17075 -0.8 -3.8 ABC transporter permease compare
BPHYT_RS31950 -0.8 -1.6 short-chain dehydrogenase compare
BPHYT_RS10540 -0.8 -1.3 secretion protein compare
BPHYT_RS06075 -0.8 -5.0 hypothetical protein compare
BPHYT_RS29720 -0.8 -1.2 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS17035 -0.8 -1.6 sugar kinase compare
BPHYT_RS36435 -0.8 -1.6 hypothetical protein compare
BPHYT_RS29320 -0.8 -1.6 histidine kinase compare
BPHYT_RS11480 -0.8 -1.8 heme ABC transporter ATP-binding protein compare
BPHYT_RS23265 -0.8 -3.3 methylcrotonoyl-CoA carboxylase compare
BPHYT_RS16905 -0.8 -4.1 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS24770 -0.8 -1.9 DeoR family transcriptional regulator compare
BPHYT_RS11705 -0.7 -1.1 hypothetical protein compare
BPHYT_RS03410 -0.7 -1.9 queuine tRNA-ribosyltransferase compare
BPHYT_RS09620 -0.7 -2.2 aminodeoxychorismate lyase compare
BPHYT_RS34780 -0.7 -2.5 phytoene synthase compare
BPHYT_RS08340 -0.7 -1.1 chemotaxis protein CheY compare
BPHYT_RS32525 -0.7 -1.5 hypothetical protein compare
BPHYT_RS36525 -0.7 -2.0 hypothetical protein compare
BPHYT_RS05620 -0.7 -1.1 CsbD family protein compare
BPHYT_RS27655 -0.7 -1.4 potassium transporter compare
BPHYT_RS28030 -0.7 -1.7 methylmalonate-semialdehyde dehydrogenase compare
BPHYT_RS27370 -0.7 -1.6 CoA transferase compare
BPHYT_RS34490 -0.7 -1.0 hypothetical protein compare
BPHYT_RS03455 -0.7 -1.7 paraquat-inducible protein A compare
BPHYT_RS13645 -0.7 -5.7 threonine--tRNA ligase compare
BPHYT_RS02285 -0.7 -2.9 cell division protein compare
BPHYT_RS20280 -0.7 -1.8 hypothetical protein compare
BPHYT_RS29085 -0.7 -1.2 LysR family transcriptional regulator compare
BPHYT_RS04965 -0.7 -3.7 ATP-binding protein compare
BPHYT_RS33950 -0.7 -4.7 GntR family transcriptional regulator compare
BPHYT_RS09500 -0.7 -2.6 glucose-6-phosphate isomerase compare
BPHYT_RS14390 -0.7 -3.5 peptidase compare
BPHYT_RS23390 -0.7 -1.3 hypothetical protein compare
BPHYT_RS19085 -0.7 -4.0 flagellin compare
BPHYT_RS33580 -0.7 -1.9 geranyltranstransferase compare
BPHYT_RS08125 -0.7 -4.4 ATPase compare
BPHYT_RS16215 -0.7 -3.0 sensor histidine kinase compare
BPHYT_RS03365 -0.7 -2.1 NUDIX hydrolase compare
BPHYT_RS22530 -0.7 -1.3 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS06410 -0.7 -2.1 transcriptional regulator compare
BPHYT_RS10230 -0.7 -2.3 hypothetical protein compare
BPHYT_RS36540 -0.7 -1.2 hypothetical protein compare
BPHYT_RS04955 -0.7 -1.7 methionyl-tRNA synthetase compare
BPHYT_RS17445 -0.7 -3.2 GTP-binding protein YchF compare
BPHYT_RS04625 -0.7 -1.3 urea ABC transporter ATP-binding protein compare
BPHYT_RS03655 -0.7 -1.0 membrane protein compare
BPHYT_RS06760 -0.7 -2.7 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS17240 -0.7 -0.9 cell division protein FtsW compare
BPHYT_RS26560 -0.7 -1.1 murein hydrolase transporter LrgA compare
BPHYT_RS28955 -0.7 -1.8 hypothetical protein compare
BPHYT_RS20245 -0.7 -3.3 iron ABC transporter substrate-binding protein compare
BPHYT_RS31260 -0.7 -1.3 histidine kinase compare
BPHYT_RS22360 -0.7 -1.0 response regulator receiver compare
BPHYT_RS27405 -0.7 -1.6 aldehyde dehydrogenase compare
BPHYT_RS14060 -0.6 -1.3 peptidase M23 compare
BPHYT_RS34655 -0.6 -1.3 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS16250 -0.6 -0.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS23225 -0.6 -1.5 hypothetical protein compare
BPHYT_RS06990 -0.6 -1.0 membrane protein compare
BPHYT_RS06190 -0.6 -2.2 heptosyltransferase compare
BPHYT_RS33765 -0.6 -0.9 membrane protein compare
BPHYT_RS01630 -0.6 -1.5 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS08355 -0.6 -1.4 hypothetical protein compare
BPHYT_RS03090 -0.6 -1.1 hypothetical protein compare
BPHYT_RS34235 -0.6 -1.1 putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS02930 -0.6 -1.2 KpsF/GutQ family protein compare
BPHYT_RS02525 -0.6 -3.9 membrane protein compare
BPHYT_RS00690 -0.6 -0.8 transcriptional regulator compare
BPHYT_RS12060 -0.6 -1.5 hypothetical protein compare
BPHYT_RS09290 -0.6 -4.0 helicase compare
BPHYT_RS04170 -0.6 -1.7 hypothetical protein compare
BPHYT_RS05615 -0.6 -1.7 hypothetical protein compare
BPHYT_RS29540 -0.6 -1.0 aldolase compare
BPHYT_RS06415 -0.6 -1.3 uracil phosphoribosyltransferase compare
BPHYT_RS13735 -0.6 -3.1 membrane protein compare
BPHYT_RS20900 -0.6 -1.8 phytanoyl-CoA dioxygenase compare
BPHYT_RS13340 -0.6 -2.5 benzoyl-CoA oxygenase compare
BPHYT_RS04720 -0.6 -2.4 transcriptional regulator compare
BPHYT_RS05980 -0.6 -3.1 heat shock protein 90 compare
BPHYT_RS23090 -0.6 -1.4 histidine kinase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in temperature experiments