Experiment set2IT066 for Rhodanobacter denitrificans FW104-10B01
R2A with Zinc chloride 0.625 mM
Group: stressMedia: R2A + Zinc chloride (0.625 mM)
Culturing: rhodanobacter_10B01_ML12, 96 deep-well microplate; 0.8 mL volume, Aerobic, at 30 (C), shaken=700 rpm
By: Hans on 02/27/2021
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Specific Phenotypes
For 6 genes in this experiment
For stress Zinc chloride in Rhodanobacter denitrificans FW104-10B01
For stress Zinc chloride across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Cobalt-zinc-cadmium resistance | 2 |
| Bacterial Cell Division | 1 |
| Glutaredoxins | 1 |
| Lipoic acid metabolism | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| lipoate biosynthesis and incorporation I | 2 | 2 | 1 |
| lipoate biosynthesis and incorporation V (mammals) | 3 | 2 | 1 |
| lipoate biosynthesis and incorporation III (Bacillus) | 3 | 2 | 1 |
| lipoate biosynthesis and incorporation IV (yeast) | 7 | 4 | 1 |