Experiment set2IT066 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -6.6 -4.6 5,10-methylenetetrahydrofolate reductase compare
RR42_RS18305 -6.3 -4.3 anthranilate phosphoribosyltransferase compare
RR42_RS05860 -6.2 -4.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14390 -6.0 -4.1 3-isopropylmalate dehydratase compare
RR42_RS16255 -6.0 -5.8 sulfate adenylyltransferase compare
RR42_RS14400 -5.9 -4.1 isopropylmalate isomerase compare
RR42_RS06485 -5.9 -5.7 chorismate synthase compare
RR42_RS15905 -5.8 -5.7 phosphoenolpyruvate carboxylase compare
RR42_RS14365 -5.8 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS33255 -5.7 -3.8 protein-tyrosine phosphatase compare
RR42_RS30655 -5.4 -6.3 LysR family transcriptional regulator compare
RR42_RS14385 -5.3 -5.1 3-isopropylmalate dehydrogenase compare
RR42_RS11795 -5.2 -3.3 PEP synthetase regulatory protein compare
RR42_RS16250 -5.1 -7.8 sulfate adenylyltransferase compare
RR42_RS04475 -5.1 -9.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS33240 -5.0 -12.1 GDP-L-fucose synthase compare
RR42_RS01160 -4.9 -11.4 homoserine O-acetyltransferase compare
RR42_RS33210 -4.9 -7.4 teichoic acid biosynthesis protein compare
RR42_RS33260 -4.8 -5.7 multidrug MFS transporter compare
RR42_RS19005 -4.7 -4.6 3-dehydroquinate synthase compare
RR42_RS16265 -4.7 -4.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS17645 -4.7 -5.6 shikimate dehydrogenase compare
RR42_RS07555 -4.6 -3.2 potassium transporter Kup compare
RR42_RS19010 -4.6 -7.6 shikimate kinase compare
RR42_RS16270 -4.6 -9.2 sulfite reductase compare
RR42_RS30660 -4.5 -10.5 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS14320 -4.4 -5.3 O-succinylhomoserine sulfhydrylase compare
RR42_RS18300 -4.3 -5.1 anthranilate synthase subunit II compare
RR42_RS33245 -4.1 -11.5 mannose-1-phosphate guanyltransferase compare
RR42_RS18295 -4.1 -12.7 anthranilate synthase component I compare
RR42_RS16280 -4.1 -7.8 transcriptional regulator compare
RR42_RS33250 -4.0 -7.2 tyrosine protein kinase compare
RR42_RS16245 -3.9 -5.7 uroporphyrin-III methyltransferase compare
RR42_RS18990 -3.9 -19.1 glutamate synthase compare
RR42_RS11790 -3.8 -9.0 phosphoenolpyruvate synthase compare
RR42_RS01290 -3.8 -6.9 thiamine biosynthesis protein ThiC compare
RR42_RS16275 -3.8 -3.7 membrane protein compare
RR42_RS11770 -3.5 -2.1 cyclase compare
RR42_RS33235 -3.4 -7.4 GDP-mannose 4,6-dehydratase compare
RR42_RS07605 -3.4 -6.4 poly-beta-hydroxybutyrate polymerase compare
RR42_RS07365 -3.2 -3.8 pyruvate dehydrogenase compare
RR42_RS12040 -3.2 -13.0 MFS transporter compare
RR42_RS04460 -3.1 -5.7 chorismate mutase compare
RR42_RS33355 -3.1 -6.8 membrane protein compare
RR42_RS15035 -3.1 -5.5 ZIP zinc transporter compare
RR42_RS01845 -3.1 -1.9 glycerol-3-phosphate dehydrogenase compare
RR42_RS05990 -3.0 -7.1 aromatic amino acid aminotransferase compare
RR42_RS04700 -3.0 -1.9 ribonuclease G compare
RR42_RS17105 -3.0 -11.6 Clp protease ClpX compare
RR42_RS15410 -3.0 -4.7 membrane protein compare
RR42_RS14360 -2.8 -1.6 tryptophan synthase subunit alpha compare
RR42_RS07380 -2.8 -5.2 dihydrolipoamide dehydrogenase compare
RR42_RS15890 -2.7 -6.9 heme biosynthesis protein HemY compare
RR42_RS06095 -2.5 -5.0 hypothetical protein compare
RR42_RS04535 -2.5 -4.2 cysteine synthase compare
RR42_RS16240 -2.5 -1.4 cobalamin biosynthesis protein CbiX compare
RR42_RS20510 -2.5 -8.6 small component of pyruvate transporter (ybdD-like) (from data) conserved
RR42_RS18855 -2.3 -4.1 preprotein translocase compare
RR42_RS14790 -2.3 -7.7 cobalamin biosynthesis protein CobD compare
RR42_RS18985 -2.3 -4.6 glutamate synthase compare
RR42_RS05665 -2.2 -1.7 urease accessory protein UreJ compare
RR42_RS20515 -2.2 -14.8 large component of pyruvate transporter (cstA-like) (from data) conserved
RR42_RS13910 -2.2 -7.7 glutamate racemase compare
RR42_RS04470 -2.1 -4.2 prephenate dehydrogenase compare
RR42_RS17055 -2.1 -7.0 LuxR family transcriptional regulator compare
RR42_RS01920 -2.0 -3.8 protoheme IX farnesyltransferase compare
RR42_RS20520 -2.0 -12.4 histidine kinase conserved
RR42_RS19090 -2.0 -2.3 cytochrome C compare
RR42_RS17060 -2.0 -12.9 histidine kinase compare
RR42_RS03095 -2.0 -2.6 succinyl-CoA synthetase subunit beta compare
RR42_RS02705 -2.0 -2.5 Holliday junction DNA helicase RuvA compare
RR42_RS01380 -1.9 -2.2 membrane protein compare
RR42_RS20525 -1.9 -5.5 LuxR family transcriptional regulator conserved
RR42_RS07360 -1.9 -4.1 ATPase compare
RR42_RS33215 -1.9 -10.0 transferase compare
RR42_RS15895 -1.9 -4.4 uroporphyrinogen III methyltransferase compare
RR42_RS15415 -1.9 -2.9 membrane protein compare
RR42_RS13620 -1.9 -1.4 ferredoxin compare
RR42_RS05500 -1.9 -1.6 preprotein translocase subunit SecG compare
RR42_RS35875 -1.9 -8.6 UDP-galactose-4-epimerase compare
RR42_RS19885 -1.9 -1.7 aminoglycoside transporter compare
RR42_RS07615 -1.8 -2.3 3-ketoacyl-ACP reductase compare
RR42_RS04895 -1.8 -10.3 serine/threonine protein phosphatase compare
RR42_RS30640 -1.8 -4.6 DNA mismatch repair protein MutT compare
RR42_RS12550 -1.8 -2.9 hypothetical protein compare
RR42_RS36105 -1.8 -3.0 MarR family transcriptional regulator compare
RR42_RS18850 -1.7 -2.6 preprotein translocase subunit TatC compare
RR42_RS14965 -1.7 -3.7 hypothetical protein compare
RR42_RS32975 -1.7 -1.9 LysR family transcriptional regulator compare
RR42_RS18310 -1.6 -1.7 indole-3-glycerol-phosphate synthase compare
RR42_RS07565 -1.6 -6.9 transcription accessory protein compare
RR42_RS18995 -1.6 -5.0 transposase compare
RR42_RS01775 -1.6 -5.9 glutamate--cysteine ligase compare
RR42_RS19045 -1.5 -1.3 frataxin compare
RR42_RS26935 -1.5 -4.4 farnesyl-diphosphate farnesyltransferase compare
RR42_RS33195 -1.5 -8.1 UDP-sugar lipid carrier transferase compare
RR42_RS05955 -1.4 -1.4 hypothetical protein compare
RR42_RS18425 -1.4 -1.3 hypothetical protein compare
RR42_RS17565 -1.4 -9.3 LysR family transcriptional regulator compare
RR42_RS02250 -1.4 -1.7 GntR family transcriptional regulator compare
RR42_RS14845 -1.4 -1.6 MarR family transcriptional regulator compare
RR42_RS04145 -1.4 -1.0 peptidase A24 compare
RR42_RS21220 -1.4 -2.1 iron transporter FeoB compare
RR42_RS02045 -1.4 -8.4 GTPase compare
RR42_RS24605 -1.4 -6.2 TetR family transcriptional regulator compare
RR42_RS28885 -1.4 -5.1 membrane protein compare
RR42_RS34395 -1.4 -1.8 hypothetical protein compare
RR42_RS17730 -1.3 -2.7 hypothetical protein compare
RR42_RS16260 -1.3 -0.8 phosphoadenosine phosphosulfate reductase compare
RR42_RS20205 -1.3 -1.7 chromosome partitioning protein compare
RR42_RS15745 -1.3 -5.5 group1 glycosyl transferase compare
RR42_RS03080 -1.3 -3.2 recombinase RecA compare
RR42_RS17050 -1.3 -4.5 phosphoribosylglycinamide formyltransferase compare
RR42_RS25785 -1.3 -2.4 TetR family transcriptional regulator compare
RR42_RS05485 -1.3 -2.0 polynucleotide phosphorylase/polyadenylase compare
RR42_RS13515 -1.3 -4.3 membrane protein compare
RR42_RS03085 -1.3 -1.1 RecX family transcriptional regulator compare
RR42_RS12590 -1.3 -1.0 50S ribosomal protein L9 compare
RR42_RS15420 -1.3 -3.3 hypothetical protein compare
RR42_RS17720 -1.3 -2.4 sugar kinase compare
RR42_RS18270 -1.2 -2.8 murein transglycosylase compare
RR42_RS16930 -1.2 -2.7 sulfonate ABC transporter ATP-binding protein compare
RR42_RS36315 -1.2 -3.5 fructose 2,6-bisphosphatase compare
RR42_RS31830 -1.2 -1.5 short-chain dehydrogenase compare
RR42_RS35250 -1.2 -2.0 alpha/beta hydrolase compare
RR42_RS21295 -1.2 -1.9 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS15740 -1.2 -1.8 hypothetical protein compare
RR42_RS12050 -1.2 -5.2 DNA polymerase compare
RR42_RS06875 -1.2 -1.9 hypothetical protein compare
RR42_RS19085 -1.2 -1.5 cytochrome C biogenesis protein ResB compare
RR42_RS21665 -1.2 -6.5 cobalt transporter compare
RR42_RS01045 -1.2 -2.0 Fur family transcriptional regulator compare
RR42_RS20570 -1.1 -1.9 biopolymer transporter ExbD compare
RR42_RS28020 -1.1 -3.2 phosphohydrolase compare
RR42_RS27710 -1.1 -2.9 LysR family transcriptional regulator compare
RR42_RS27915 -1.1 -1.7 acyl-CoA synthetase compare
RR42_RS00725 -1.1 -3.6 hypothetical protein compare
RR42_RS18930 -1.1 -3.3 BolA family transcriptional regulator compare
RR42_RS12015 -1.1 -1.7 dihydrolipoamide acyltransferase compare
RR42_RS05420 -1.1 -3.0 membrane protein compare
RR42_RS01505 -1.1 -1.5 tRNA-Cys compare
RR42_RS33650 -1.1 -2.6 IclR family transcriptional regulator compare
RR42_RS28290 -1.1 -4.0 DNA-binding protein compare
RR42_RS23760 -1.1 -2.0 tRNA-Asn compare
RR42_RS13145 -1.1 -1.5 DNA-binding protein compare
RR42_RS28955 -1.1 -3.0 transcriptional regulator compare
RR42_RS12925 -1.1 -1.4 ATPase compare
RR42_RS12130 -1.1 -2.1 hypothetical protein compare
RR42_RS29280 -1.1 -1.1 hypothetical protein compare
RR42_RS14860 -1.0 -1.5 hypothetical protein compare
RR42_RS06630 -1.0 -1.8 integration host factor subunit alpha compare
RR42_RS17930 -1.0 -3.4 RNA pyrophosphohydrolase compare
RR42_RS25510 -1.0 -1.4 short-chain dehydrogenase compare
RR42_RS32600 -1.0 -1.8 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS35220 -1.0 -1.3 peptide ABC transporter ATP-binding protein compare
RR42_RS13655 -1.0 -2.7 glyoxalase compare
RR42_RS34690 -1.0 -2.3 permease compare
RR42_RS21150 -1.0 -1.7 hypothetical protein compare
RR42_RS13835 -1.0 -2.0 hypothetical protein compare
RR42_RS14080 -1.0 -5.5 RNA polymerase sigma factor RpoE compare
RR42_RS36545 -1.0 -2.2 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS20790 -1.0 -2.5 isoprenylcysteine carboxyl methyltransferase compare
RR42_RS13905 -1.0 -3.4 fumarate hydratase compare
RR42_RS08690 -1.0 -2.1 hypothetical protein compare
RR42_RS02860 -1.0 -2.2 hypothetical protein compare
RR42_RS10920 -0.9 -1.1 hypothetical protein compare
RR42_RS24820 -0.9 -2.1 hypothetical protein compare
RR42_RS34570 -0.9 -1.2 hypothetical protein compare
RR42_RS26740 -0.9 -0.8 protein serine/threonine phosphatase compare
RR42_RS18820 -0.9 -3.8 cytochrome B compare
RR42_RS02150 -0.9 -1.7 membrane protein compare
RR42_RS12615 -0.9 -1.8 LexA family transcriptional regulator compare
RR42_RS05610 -0.9 -2.4 dehydratase compare
RR42_RS03925 -0.9 -2.0 hypothetical protein compare
RR42_RS07890 -0.9 -1.3 hypothetical protein compare
RR42_RS08390 -0.9 -1.9 hypothetical protein compare
RR42_RS11480 -0.9 -1.6 cytochrome C compare
RR42_RS33205 -0.9 -4.4 UDP-glucose 6-dehydrogenase compare
RR42_RS26590 -0.9 -1.3 hypothetical protein compare
RR42_RS18140 -0.9 -1.0 MarR family transcriptional regulator compare
RR42_RS28695 -0.9 -1.2 hypothetical protein compare
RR42_RS28630 -0.9 -3.8 ABC transporter substrate-binding protein compare
RR42_RS07185 -0.9 -2.5 hypothetical protein compare
RR42_RS17390 -0.9 -3.0 ATP-dependent DNA helicase RecG compare
RR42_RS04880 -0.8 -5.0 coproporphyrinogen III oxidase compare
RR42_RS15475 -0.8 -4.0 protein tolQ compare
RR42_RS26535 -0.8 -2.2 diguanylate cyclase compare
RR42_RS08365 -0.8 -3.6 hypothetical protein compare
RR42_RS23635 -0.8 -1.6 flagellar assembly protein FliT compare
RR42_RS23515 -0.8 -2.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS36370 -0.8 -2.2 dihydrodipicolinate synthase compare
RR42_RS08330 -0.8 -0.9 hypothetical protein compare
RR42_RS01780 -0.8 -3.8 glutathione synthetase compare
RR42_RS04320 -0.8 -2.7 cell division protein FtsK compare
RR42_RS01040 -0.8 -5.2 cobalamin biosynthesis protein CobW compare
RR42_RS27160 -0.8 -1.9 acetyl-CoA acetyltransferase compare
RR42_RS00115 -0.8 -1.0 hypothetical protein compare
RR42_RS27180 -0.8 -2.8 alkylhydroperoxidase compare
RR42_RS28550 -0.8 -1.8 enoyl-CoA hydratase compare
RR42_RS24980 -0.8 -1.2 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium pyruvate in Cupriavidus basilensis FW507-4G11

For carbon source Sodium pyruvate across organisms