Experiment set2IT065 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

D-Trehalose dihydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS10740 +5.3 38.2 DNA-binding response regulator compare
CA265_RS10745 +5.0 40.5 diguanylate cyclase compare
CA265_RS16295 +4.3 11.0 LacI family transcriptional regulator compare
CA265_RS15895 +3.6 9.7 hypothetical protein compare
CA265_RS00940 +3.3 2.7 hypothetical protein compare
CA265_RS08905 +2.8 10.6 DNA helicase RecQ compare
CA265_RS18235 +2.7 8.4 peptidase compare
CA265_RS16245 +2.6 3.1 secretory protein compare
CA265_RS23145 +2.4 13.3 hypothetical protein compare
CA265_RS14705 +2.0 13.3 hypothetical protein compare
CA265_RS15200 +1.9 6.9 hypothetical protein compare
CA265_RS15900 +1.8 3.5 hypothetical protein compare
CA265_RS20350 +1.7 9.2 gliding motility lipoprotein GldH compare
CA265_RS04990 +1.6 6.0 short chain dehydrogenase compare
CA265_RS17455 +1.5 5.2 hypothetical protein compare
CA265_RS15070 +1.5 7.2 hypothetical protein compare
CA265_RS24625 +1.5 10.7 LacI family transcriptional regulator compare
CA265_RS13695 +1.5 5.1 hypothetical protein compare
CA265_RS15335 +1.4 5.9 NAD-dependent epimerase compare
CA265_RS00270 +1.4 1.9 hypothetical protein compare
CA265_RS16240 +1.4 4.5 alpha-mannosidase compare
CA265_RS12890 +1.4 9.6 hypothetical protein compare
CA265_RS24230 +1.3 9.1 RNA polymerase sigma factor compare
CA265_RS20525 +1.3 3.2 hypothetical protein compare
CA265_RS04330 +1.3 5.1 transcriptional regulator compare
CA265_RS15640 +1.3 7.8 sugar kinase compare
CA265_RS24680 +1.3 5.8 hypothetical protein compare
CA265_RS18090 +1.3 10.8 gliding motility protein compare
CA265_RS16270 +1.2 5.8 hypothetical protein compare
CA265_RS15195 +1.2 6.4 hypothetical protein compare
CA265_RS21905 +1.2 6.7 hypothetical protein compare
CA265_RS17720 +1.2 8.4 hypothetical protein compare
CA265_RS23305 +1.2 2.2 hypothetical protein compare
CA265_RS23155 +1.2 8.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CA265_RS23960 +1.1 2.5 glycine cleavage system protein T compare
CA265_RS06585 +1.1 6.9 hypothetical protein compare
CA265_RS16250 +1.1 4.7 secretory protein compare
CA265_RS19030 +1.1 5.2 hypothetical protein compare
CA265_RS19945 +1.1 4.0 hypothetical protein compare
CA265_RS23510 +1.1 4.4 energy transducer TonB compare
CA265_RS21900 +1.1 9.3 two-component sensor histidine kinase compare
CA265_RS18120 +1.1 8.7 gliding motility protein GldM compare
CA265_RS21715 +1.1 5.5 hypothetical protein compare
CA265_RS04295 +1.1 3.4 transcriptional regulator compare
CA265_RS18125 +1.0 5.8 gliding motility protein GldL compare
CA265_RS03295 +1.0 7.6 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS18115 +1.0 6.0 gliding motility protein GldN compare
CA265_RS22690 +1.0 8.0 hypothetical protein compare
CA265_RS02045 +1.0 1.6 hypothetical protein compare
CA265_RS15115 +1.0 5.9 porin compare
CA265_RS16785 +1.0 1.9 50S ribosomal protein L17 compare
CA265_RS18130 +1.0 8.1 gliding motility-associated lipoprotein compare
CA265_RS02200 +1.0 6.6 NUDIX hydrolase compare
CA265_RS25295 +1.0 6.7 DoxX family protein compare
CA265_RS21060 +1.0 3.7 hypothetical protein compare
CA265_RS18780 +0.9 3.6 YicC family protein compare
CA265_RS21000 +0.9 4.9 ribosome silencing factor compare
CA265_RS23515 +0.9 3.0 hypothetical protein compare
CA265_RS24575 +0.9 5.2 hypothetical protein compare
CA265_RS15085 +0.9 5.9 hypothetical protein compare
CA265_RS06115 +0.9 6.1 DNA mismatch repair protein MutT compare
CA265_RS23520 +0.9 6.6 phosphate ABC transporter substrate-binding protein compare
CA265_RS19380 +0.9 6.9 beta-carotene 15,15'-monooxygenase compare
CA265_RS23635 +0.9 6.9 gliding motility lipoprotein GldJ compare
CA265_RS18945 +0.9 5.2 LacI family transcriptional regulator compare
CA265_RS19940 +0.9 7.3 hypothetical protein compare
CA265_RS21430 +0.9 2.9 hypothetical protein compare
CA265_RS18230 +0.8 2.1 two-component sensor histidine kinase compare
CA265_RS18990 +0.8 7.7 cell surface protein SprA compare
CA265_RS13685 +0.8 4.6 hypothetical protein compare
CA265_RS23140 +0.8 2.4 hypothetical protein compare
CA265_RS04325 +0.8 2.2 hypothetical protein compare
CA265_RS21565 +0.8 1.1 cold-shock protein compare
CA265_RS03260 +0.8 6.3 multidrug ABC transporter ATP-binding protein compare
CA265_RS00380 +0.8 2.6 hypothetical protein compare
CA265_RS06595 +0.8 1.4 Arc family DNA binding domain-containing protein compare
CA265_RS21670 +0.8 3.8 hypothetical protein compare
CA265_RS14715 +0.8 4.6 hypothetical protein compare
CA265_RS09720 +0.8 5.4 transglycosylase compare
CA265_RS08880 +0.8 4.9 chromate transporter compare
CA265_RS19140 +0.8 2.1 tRNA-Ile compare
CA265_RS23675 +0.8 2.4 hypothetical protein compare
CA265_RS21330 +0.8 5.0 TetR family transcriptional regulator compare
CA265_RS21435 +0.8 3.7 hypothetical protein compare
CA265_RS14535 +0.7 2.2 DUF4783 domain-containing protein compare
CA265_RS17685 +0.7 3.8 hypothetical protein compare
CA265_RS10390 +0.7 2.0 hypothetical protein compare
CA265_RS13225 +0.7 5.1 exonuclease compare
CA265_RS03290 +0.7 4.9 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS14550 +0.7 4.5 hypothetical protein compare
CA265_RS17710 +0.7 5.2 hypothetical protein compare
CA265_RS02315 +0.7 4.5 single-stranded DNA-binding protein compare
CA265_RS15330 +0.7 1.6 YebC/PmpR family DNA-binding transcriptional regulator compare
CA265_RS04140 +0.7 5.3 glycogen synthase compare
CA265_RS01050 +0.7 5.8 sodium:solute symporter compare
CA265_RS21365 +0.7 2.5 thiol reductase thioredoxin compare
CA265_RS17705 +0.7 5.2 hypothetical protein compare
CA265_RS15315 +0.7 2.8 xylosidase compare
CA265_RS24655 +0.7 4.6 maltose phosphorylase (EC 2.4.1.8) (from data) compare
CA265_RS18770 +0.7 3.1 hypothetical protein compare
CA265_RS19740 +0.7 2.5 gliding motility lipoprotein GldD compare
CA265_RS05620 +0.7 1.1 hypothetical protein compare
CA265_RS15310 +0.7 3.4 beta-glucosidase compare
CA265_RS00490 +0.7 1.7 hypothetical protein compare
CA265_RS18465 +0.7 3.4 RNA-splicing ligase RtcB compare
CA265_RS02965 +0.7 3.7 hypothetical protein compare
CA265_RS17390 +0.7 4.2 PadR family transcriptional regulator compare
CA265_RS25050 +0.7 2.8 hypothetical protein compare
CA265_RS04980 +0.7 2.7 recombination protein RecR compare
CA265_RS03255 +0.6 4.5 glycerophosphodiester phosphodiesterase compare
CA265_RS19500 +0.6 3.6 methyltransferase type 11 compare
CA265_RS01165 +0.6 1.4 hypothetical protein compare
CA265_RS24355 +0.6 3.0 transcriptional regulator compare
CA265_RS14840 +0.6 4.2 DUF4835 domain-containing protein compare
CA265_RS24560 +0.6 4.2 DUF5007 domain-containing protein compare
CA265_RS16005 +0.6 2.9 hypothetical protein compare
CA265_RS17860 +0.6 3.4 hypothetical protein compare
CA265_RS06930 +0.6 2.0 hypothetical protein compare
CA265_RS23800 +0.6 3.0 methyltransferase type 12 compare
CA265_RS20990 +0.6 1.6 sugar transporter compare
CA265_RS21975 +0.6 4.8 peptidase S41 compare
CA265_RS06405 +0.6 2.0 hypothetical protein compare
CA265_RS24720 +0.6 4.8 multidrug transporter compare
CA265_RS21620 +0.6 4.2 hybrid sensor histidine kinase/response regulator compare
CA265_RS22800 +0.6 3.8 glycosyl transferase compare
CA265_RS15905 +0.6 2.7 RNA polymerase sigma factor compare
CA265_RS03835 +0.6 1.6 hypothetical protein compare
CA265_RS23755 +0.5 3.3 lauroyl acyltransferase compare
CA265_RS14845 +0.5 3.8 transcriptional regulator compare
CA265_RS18265 +0.5 2.4 hypothetical protein compare
CA265_RS18855 +0.5 1.8 hypothetical protein compare
CA265_RS18570 +0.5 2.3 hypothetical protein compare
CA265_RS02145 +0.5 4.3 1,4-alpha-glucan branching enzyme compare
CA265_RS22455 +0.5 2.9 hypothetical protein compare
CA265_RS15270 +0.5 3.0 hypothetical protein compare
CA265_RS23985 +0.5 3.2 gliding motility lipoprotein GldB compare
CA265_RS23650 +0.5 3.5 hypothetical protein compare
CA265_RS09840 +0.5 1.9 YajQ family cyclic di-GMP-binding protein compare
CA265_RS23835 +0.5 2.5 hypothetical protein compare
CA265_RS10985 +0.5 2.9 hypothetical protein compare
CA265_RS22980 +0.5 1.6 hypothetical protein compare
CA265_RS23020 +0.5 4.0 hypothetical protein compare
CA265_RS12940 +0.5 2.5 peptidase dimerization domain protein compare
CA265_RS17575 +0.5 3.6 acyl-CoA dehydrogenase compare
CA265_RS17555 +0.5 3.8 hypothetical protein compare
CA265_RS04155 +0.5 4.2 bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase compare
CA265_RS10600 +0.5 2.5 RNA polymerase subunit sigma-24 compare
CA265_RS23525 +0.5 3.8 hypothetical protein compare
CA265_RS24555 +0.5 3.2 ATP/GTP-binding protein compare
CA265_RS08895 +0.5 3.6 mannose-1-phosphate guanylyltransferase compare
CA265_RS19345 +0.5 3.4 hypothetical protein compare
CA265_RS17115 +0.5 2.1 arsenate reductase compare
CA265_RS25395 +0.5 3.1 cysteine hydrolase compare
CA265_RS24970 +0.5 2.6 AAA family ATPase compare
CA265_RS17680 +0.5 2.1 hypothetical protein compare
CA265_RS18140 +0.5 2.6 DUF4271 domain-containing protein compare
CA265_RS07520 +0.5 3.4 cation diffusion facilitator family transporter compare
CA265_RS00570 +0.5 2.9 hypothetical protein compare
CA265_RS01035 +0.5 2.3 hypothetical protein compare
CA265_RS03665 +0.5 2.5 hypothetical protein compare
CA265_RS02125 +0.5 2.8 hypothetical protein compare
CA265_RS20640 +0.5 2.5 hypothetical protein compare
CA265_RS19035 +0.5 3.9 hypothetical protein compare
CA265_RS01975 +0.5 1.1 cell division protein compare
CA265_RS04010 +0.5 2.9 hypothetical protein compare
CA265_RS24590 +0.5 3.5 hypothetical protein compare
CA265_RS05615 +0.5 2.7 hypothetical protein compare
CA265_RS23620 +0.5 3.2 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
CA265_RS21255 +0.5 3.4 hypothetical protein compare
CA265_RS20305 +0.5 3.7 RagB/SusD family nutrient uptake outer membrane protein compare
CA265_RS10020 +0.5 2.6 hypothetical protein compare
CA265_RS22610 +0.5 2.4 hypothetical protein compare
CA265_RS24170 +0.5 3.2 MFS transporter compare
CA265_RS21130 +0.5 2.9 Co2+/Mg2+ efflux protein ApaG compare
CA265_RS25135 +0.5 1.7 histidine kinase compare
CA265_RS19610 +0.5 1.1 hypothetical protein compare
CA265_RS20865 +0.5 1.7 hypothetical protein compare
CA265_RS23090 +0.5 1.9 transcriptional regulator compare
CA265_RS06010 +0.5 1.5 hypothetical protein compare
CA265_RS19650 +0.5 2.4 DNA-3-methyladenine glycosylase compare
CA265_RS19640 +0.5 2.5 hypothetical protein compare
CA265_RS07595 +0.5 2.5 MerR family transcriptional regulator compare
CA265_RS03115 +0.5 1.5 peroxiredoxin compare
CA265_RS13245 +0.5 2.6 hypothetical protein compare
CA265_RS18975 +0.5 2.1 glycine cleavage system protein H compare
CA265_RS24585 +0.5 3.1 hypothetical protein compare
CA265_RS05940 +0.4 0.9 hypothetical protein compare
CA265_RS07110 +0.4 2.3 hypothetical protein compare
CA265_RS03530 +0.4 1.8 hypothetical protein compare
CA265_RS09050 +0.4 2.2 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS16940 +0.4 2.5 plasmid stabilization system protein compare
CA265_RS17715 +0.4 4.2 hypothetical protein compare
CA265_RS25255 +0.4 3.0 methyltransferase type 11 compare
CA265_RS01100 +0.4 2.5 transcriptional regulator compare
CA265_RS07625 +0.4 1.4 hypothetical protein compare
CA265_RS20900 +0.4 2.3 hypoxanthine phosphoribosyltransferase compare
CA265_RS14615 +0.4 2.2 hypothetical protein compare
CA265_RS16585 +0.4 1.4 hypothetical protein compare
CA265_RS24040 +0.4 1.0 seryl-tRNA synthetase compare
CA265_RS06900 +0.4 1.7 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Trehalose dihydrate in Pedobacter sp. GW460-11-11-14-LB5

For carbon source D-Trehalose dihydrate across organisms