Experiment set2IT065 for Ralstonia sp. UNC404CL21Col

Compare to:

3-Hydroxypropionate carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13250 -7.7 -5.3 phosphoserine phosphatase SerB compare
ABZR87_RS14540 -7.7 -5.3 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS16170 -6.9 -4.8 argininosuccinate lyase compare
ABZR87_RS01810 -6.8 -4.7 glutamate 5-kinase compare
ABZR87_RS06770 -6.7 -9.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS14500 -6.3 -12.9 tryptophan synthase subunit beta compare
ABZR87_RS07360 -6.2 -14.5 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02640 -5.9 -17.5 diaminopimelate decarboxylase compare
ABZR87_RS14530 -5.8 -6.9 3-isopropylmalate dehydrogenase compare
ABZR87_RS02590 -5.7 -13.4 3-dehydroquinate synthase compare
ABZR87_RS09445 -5.7 -14.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS05200 -5.5 -20.1 homoserine O-acetyltransferase compare
ABZR87_RS09450 -5.5 -10.4 prephenate dehydratase compare
ABZR87_RS09465 -5.4 -8.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14535 -5.4 -6.4 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS08625 -5.4 -3.7 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS07380 -5.4 -13.1 FAD/FMN-binding oxidoreductase compare
ABZR87_RS14505 -5.4 -6.0 phosphoribosylanthranilate isomerase compare
ABZR87_RS01110 -5.3 -12.4 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS01605 -5.3 -11.8 shikimate dehydrogenase compare
ABZR87_RS22970 -5.2 -13.4 cystathionine gamma-synthase family protein compare
ABZR87_RS01645 -5.2 -6.0 type II 3-dehydroquinate dehydratase compare
ABZR87_RS02595 -5.2 -11.0 shikimate kinase compare
ABZR87_RS15110 -5.0 -15.0 NADP-dependent malic enzyme compare
ABZR87_RS00210 -5.0 -9.0 nitrite/sulfite reductase compare
ABZR87_RS00185 -5.0 -3.4 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS00835 -5.0 -4.8 argininosuccinate synthase compare
ABZR87_RS14490 -4.9 -11.0 tryptophan synthase subunit alpha compare
ABZR87_RS05590 -4.9 -4.7 orotate phosphoribosyltransferase compare
ABZR87_RS09935 -4.7 -5.6 amino acid aminotransferase compare
ABZR87_RS04865 -4.6 -5.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS13790 -4.6 -11.2 chorismate synthase compare
ABZR87_RS09460 -4.6 -6.2 prephenate dehydrogenase compare
ABZR87_RS05170 -4.6 -3.2 acetylglutamate kinase compare
ABZR87_RS02160 -4.5 -6.8 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS00190 -4.5 -13.1 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS02155 -4.5 -7.6 anthranilate phosphoribosyltransferase compare
ABZR87_RS07510 -4.5 -5.3 LysR family transcriptional regulator compare
ABZR87_RS14950 -4.3 -4.2 acetolactate synthase small subunit compare
ABZR87_RS05100 -4.2 -8.9 RNA polymerase-binding protein DksA compare
ABZR87_RS00200 -4.2 -5.3 phosphoadenylyl-sulfate reductase compare
ABZR87_RS08630 -3.9 -10.1 dihydroorotase compare
ABZR87_RS05025 -3.9 -2.7 rod shape-determining protein MreC compare
ABZR87_RS06495 -3.8 -3.7 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS13300 -3.8 -12.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS00195 -3.5 -3.7 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS02145 -3.5 -2.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS00205 -3.5 -3.6 DUF934 domain-containing protein compare
ABZR87_RS00285 -3.4 -2.3 acetylornithine transaminase compare
ABZR87_RS11925 -3.4 -16.1 phosphoenolpyruvate synthase compare
ABZR87_RS11440 -3.3 -7.8 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS09500 -3.3 -4.0 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS07050 -3.3 -3.2 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS10240 -3.3 -3.2 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS14955 -3.3 -5.0 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS10820 -3.2 -11.0 LysR substrate-binding domain-containing protein compare
ABZR87_RS09895 -3.2 -2.3 DUF1841 family protein compare
ABZR87_RS00220 -3.1 -9.8 CysB family HTH-type transcriptional regulator compare
ABZR87_RS05010 -3.1 -4.2 rod shape-determining protein RodA compare
ABZR87_RS03075 -3.1 -10.8 AGE family epimerase/isomerase compare
ABZR87_RS09515 -3.0 -2.9 cysteine synthase CysM compare
ABZR87_RS10610 -3.0 -3.5 inositol monophosphatase family protein compare
ABZR87_RS02140 -3.0 -15.2 anthranilate synthase component I compare
ABZR87_RS12790 -2.9 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS14375 -2.9 -3.9 fumarate hydratase compare
ABZR87_RS04785 -2.8 -11.6 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS05015 -2.8 -5.9 penicillin-binding protein 2 compare
ABZR87_RS14380 -2.5 -7.6 glutamate racemase compare
ABZR87_RS09635 -2.3 -3.1 ribosome small subunit-dependent GTPase A compare
ABZR87_RS08750 -2.3 -3.7 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS10785 -2.3 -6.4 exodeoxyribonuclease V subunit beta compare
ABZR87_RS16180 -2.2 -3.6 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS07735 -2.2 -5.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS12785 -2.1 -7.6 endopeptidase La compare
ABZR87_RS07635 -2.0 -3.1 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS08655 -2.0 -5.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS15715 -2.0 -8.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS14115 -1.9 -6.3 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS13290 -1.9 -6.2 3-ketoacyl-ACP reductase compare
ABZR87_RS11125 -1.9 -7.1 cell division protein ZapE compare
ABZR87_RS00325 -1.9 -2.6 peptidylprolyl isomerase compare
ABZR87_RS12795 -1.8 -6.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS10565 -1.8 -4.2 cupin domain-containing protein compare
ABZR87_RS10400 -1.8 -3.5 hypothetical protein compare
ABZR87_RS10120 -1.8 -1.6 YceD family protein compare
ABZR87_RS10780 -1.7 -4.2 PD-(D/E)XK nuclease family protein compare
ABZR87_RS02480 -1.6 -2.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS07520 -1.6 -6.7 glutamate/aspartate ABC transporter substrate-binding protein compare
ABZR87_RS00215 -1.6 -4.2 sulfite exporter TauE/SafE family protein compare
ABZR87_RS10085 -1.6 -2.0 Rne/Rng family ribonuclease compare
ABZR87_RS10620 -1.6 -3.7 serine O-acetyltransferase compare
ABZR87_RS10700 -1.6 -7.5 C40 family peptidase compare
ABZR87_RS06715 -1.5 -4.1 PTS sugar transporter subunit IIA compare
ABZR87_RS07535 -1.5 -4.1 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS09820 -1.5 -2.0 RidA family protein compare
ABZR87_RS07525 -1.5 -8.8 amino acid ABC transporter permease compare
ABZR87_RS10550 -1.4 -1.9 outer membrane protein assembly factor BamC compare
ABZR87_RS00275 -1.4 -7.8 NAD-dependent epimerase/dehydratase family protein compare
ABZR87_RS13175 -1.4 -2.2 tRNA-Leu compare
ABZR87_RS17075 -1.4 -7.7 acyl-CoA thioesterase compare
ABZR87_RS05580 -1.4 -2.6 diaminopimelate epimerase compare
ABZR87_RS13475 -1.3 -6.6 PAS domain S-box protein compare
ABZR87_RS15705 -1.3 -2.9 UvrD-helicase domain-containing protein compare
ABZR87_RS00435 -1.3 -8.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS10195 -1.3 -3.9 signal peptidase I compare
ABZR87_RS07705 -1.3 -3.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS01675 -1.3 -2.0 carbohydrate kinase family protein compare
ABZR87_RS09505 -1.3 -5.6 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS08700 -1.3 -7.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS08695 -1.3 -9.0 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS01565 -1.3 -7.8 NADP-dependent malic enzyme compare
ABZR87_RS00745 -1.3 -2.2 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS02150 -1.2 -2.5 lysozyme inhibitor LprI family protein compare
ABZR87_RS07530 -1.2 -7.6 glutamate/aspartate ABC transporter permease GltK compare
ABZR87_RS00795 -1.2 -3.3 site-specific tyrosine recombinase XerD compare
ABZR87_RS18040 -1.2 -6.4 RNA polymerase sigma factor FliA compare
ABZR87_RS17310 -1.2 -5.0 PadR family transcriptional regulator compare
ABZR87_RS05065 -1.2 -3.6 tyrosine recombinase XerC compare
ABZR87_RS08660 -1.2 -5.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS16960 -1.2 -3.8 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS01285 -1.1 -2.1 preprotein translocase subunit YajC compare
ABZR87_RS11015 -1.1 -5.2 amino-acid N-acetyltransferase compare
ABZR87_RS14495 -1.1 -2.4 site-specific DNA-methyltransferase compare
ABZR87_RS06405 -1.1 -1.4 hypothetical protein compare
ABZR87_RS09615 -1.1 -2.5 50S ribosomal protein L19 compare
ABZR87_RS05350 -1.0 -3.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS22300 -1.0 -1.3 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS06745 -1.0 -4.9 S41 family peptidase compare
ABZR87_RS16125 -1.0 -6.2 heme biosynthesis protein HemY compare
ABZR87_RS04125 -1.0 -3.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS07620 -1.0 -2.3 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS01245 -1.0 -3.1 Dps family protein compare
ABZR87_RS05140 -1.0 -1.6 ATP-binding protein compare
ABZR87_RS14510 -1.0 -3.5 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS16055 -0.9 -4.9 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS11420 -0.9 -1.8 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS02485 -0.9 -1.0 MarC family protein compare
ABZR87_RS00830 -0.9 -1.6 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS15225 -0.9 -3.9 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS15440 -0.9 -2.1 ribonuclease G compare
ABZR87_RS11435 -0.9 -2.7 Mth938-like domain-containing protein compare
ABZR87_RS00875 -0.9 -3.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS10170 -0.9 -4.0 RseA family anti-sigma factor compare
ABZR87_RS11940 -0.9 -1.6 SsrA-binding protein SmpB compare
ABZR87_RS11245 -0.9 -3.8 translational GTPase TypA compare
ABZR87_RS17695 -0.9 -2.1 helix-turn-helix transcriptional regulator compare
ABZR87_RS06645 -0.9 -1.1 TlpA disulfide reductase family protein compare
ABZR87_RS08650 -0.9 -5.2 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS04945 -0.8 -2.0 DUF4390 domain-containing protein compare
ABZR87_RS01430 -0.8 -7.1 LysR family transcriptional regulator compare
ABZR87_RS06705 -0.8 -6.5 glutamate--cysteine ligase compare
ABZR87_RS15250 -0.8 -4.6 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS08990 -0.8 -3.1 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS03180 -0.8 -1.8 hypothetical protein compare
ABZR87_RS15405 -0.8 -2.1 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS02850 -0.8 -2.7 elongation factor Tu compare
ABZR87_RS11760 -0.8 -1.1 membrane protein compare
ABZR87_RS01555 -0.8 -1.2 barstar family protein compare
ABZR87_RS07020 -0.8 -6.1 dynamin-like GTPase family protein compare
ABZR87_RS07700 -0.8 -1.4 peptidylprolyl isomerase compare
ABZR87_RS08505 -0.8 -1.8 CpaE family protein compare
ABZR87_RS13330 -0.8 -2.8 DUF465 domain-containing protein compare
ABZR87_RS01130 -0.8 -3.4 LysR substrate-binding domain-containing protein compare
ABZR87_RS13350 -0.7 -2.8 potassium transporter Kup compare
ABZR87_RS14095 -0.7 -2.5 phosphate ABC transporter permease PstC compare
ABZR87_RS12120 -0.7 -1.2 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS08985 -0.7 -4.9 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS14910 -0.7 -1.4 polyribonucleotide nucleotidyltransferase compare
ABZR87_RS19255 -0.7 -3.2 type III secretion system export apparatus subunit SctR compare
ABZR87_RS06395 -0.7 -3.7 response regulator compare
ABZR87_RS20785 -0.7 -0.9 DUF2783 domain-containing protein compare
ABZR87_RS08040 -0.7 -4.4 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS08640 -0.7 -2.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS07665 -0.7 -5.0 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS07565 -0.7 -4.4 OsmC family protein compare
ABZR87_RS22520 -0.7 -1.0 ABATE domain-containing protein compare
ABZR87_RS02075 -0.7 -1.3 23S ribosomal RNA compare
ABZR87_RS11010 -0.7 -1.6 oxidative damage protection protein compare
ABZR87_RS14575 -0.7 -2.0 GntR family transcriptional regulator compare
ABZR87_RS01980 -0.7 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS23445 -0.7 -1.3 malonate decarboxylase subunit delta compare
ABZR87_RS16165 -0.6 -0.7 anti-sigma factor compare
ABZR87_RS02220 -0.6 -4.1 redox-regulated ATPase YchF compare
ABZR87_RS08525 -0.6 -2.0 prepilin peptidase compare
ABZR87_RS04940 -0.6 -3.9 PAS domain-containing sensor histidine kinase compare
ABZR87_RS14085 -0.6 -2.9 phosphate ABC transporter ATP-binding protein PstB compare
ABZR87_RS07625 -0.6 -1.2 Holliday junction branch migration protein RuvA compare
ABZR87_RS14090 -0.6 -2.9 phosphate ABC transporter permease PstA compare
ABZR87_RS18105 -0.6 -1.2 hypothetical protein compare
ABZR87_RS18080 -0.6 -1.9 hypothetical protein compare
ABZR87_RS05205 -0.6 -3.0 methionine biosynthesis protein MetW compare
ABZR87_RS08970 -0.6 -3.0 protein TolQ compare
ABZR87_RS15810 -0.6 -1.8 hypothetical protein compare
ABZR87_RS07470 -0.6 -3.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14890 -0.6 -1.0 preprotein translocase subunit SecG compare
ABZR87_RS21365 -0.6 -0.8 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS01800 -0.6 -2.8 RNA pyrophosphohydrolase compare
ABZR87_RS06235 -0.6 -2.7 MBL fold metallo-hydrolase compare
ABZR87_RS08715 -0.6 -4.8 ATP-grasp domain-containing protein compare
ABZR87_RS20440 -0.6 -0.9 F0F1 ATP synthase subunit epsilon compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source 3-Hydroxypropionate in Ralstonia sp. UNC404CL21Col

For carbon source 3-Hydroxypropionate across organisms