Experiment set2IT065 for Burkholderia phytofirmans PsJN

Compare to:

LB, 23C

200 most important genes:

  gene name fitness t score description  
BPHYT_RS23840 -6.3 -5.6 methyltransferase compare
BPHYT_RS08960 -4.7 -2.9 threonine synthase compare
BPHYT_RS12465 -4.4 -5.9 inositol monophosphatase compare
BPHYT_RS14855 -4.3 -3.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS08850 -4.3 -4.1 transcriptional regulator compare
BPHYT_RS14845 -3.4 -4.0 cysteine synthase compare
BPHYT_RS09515 -3.3 -5.7 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16710 -3.1 -2.2 LysR family transcriptional regulator compare
BPHYT_RS01625 -3.1 -5.8 chemotaxis protein CheY compare
BPHYT_RS06405 -3.1 -11.1 phosphoribosylamine--glycine ligase compare
BPHYT_RS16245 -3.1 -6.3 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16255 -2.6 -6.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS04290 -2.6 -2.7 glycosyl transferase family 2 compare
BPHYT_RS18340 -2.4 -3.3 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS06610 -2.3 -3.0 triosephosphate isomerase compare
BPHYT_RS02865 -2.3 -3.4 hypothetical protein compare
BPHYT_RS16840 -2.2 -3.8 transketolase compare
BPHYT_RS03640 -2.2 -3.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS33840 -2.1 -8.3 amidophosphoribosyltransferase compare
BPHYT_RS16835 -2.1 -8.3 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS02610 -2.1 -5.4 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16270 -2.1 -5.1 phosphoglycerate kinase compare
BPHYT_RS12845 -2.1 -13.1 ATPase compare
BPHYT_RS08565 -2.1 -2.4 dihydroorotate dehydrogenase compare
BPHYT_RS14865 -1.9 -2.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS03725 -1.9 -2.0 serine hydroxymethyltransferase compare
BPHYT_RS15620 -1.9 -5.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS29840 -1.8 -2.2 polysaccharide biosynthesis protein compare
BPHYT_RS15075 -1.8 -2.2 dihydrokaempferol 4-reductase compare
BPHYT_RS06350 -1.7 -2.4 chemotaxis protein CheY compare
BPHYT_RS02590 -1.6 -6.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS33920 -1.6 -6.0 type II citrate synthase compare
BPHYT_RS06685 -1.6 -2.9 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS06175 -1.5 -4.6 LPS biosynthesis compare
BPHYT_RS28025 -1.5 -1.9 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS04370 -1.5 -2.1 glycosyl transferase compare
BPHYT_RS06530 -1.5 -1.8 membrane protein compare
BPHYT_RS14195 -1.5 -3.0 carbamoyl phosphate synthase small subunit compare
BPHYT_RS18590 -1.4 -1.2 hypothetical protein compare
BPHYT_RS14450 -1.4 -4.9 hypothetical protein compare
BPHYT_RS14400 -1.4 -4.2 anti-sigma factor compare
BPHYT_RS30450 -1.4 -1.0 ABC transporter permease compare
BPHYT_RS34295 -1.4 -1.1 fimbrial protein compare
BPHYT_RS14190 -1.4 -7.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS29620 -1.3 -1.1 hypothetical protein compare
BPHYT_RS08130 -1.3 -1.4 transposase compare
BPHYT_RS33580 -1.3 -4.5 geranyltranstransferase compare
BPHYT_RS17095 -1.3 -2.4 proline--tRNA ligase compare
BPHYT_RS18320 -1.3 -7.7 orotate phosphoribosyltransferase compare
BPHYT_RS23230 -1.2 -1.5 histidine kinase compare
BPHYT_RS04285 -1.2 -1.5 rhamnosyltransferase compare
BPHYT_RS16905 -1.2 -5.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS12725 -1.2 -9.6 regulator compare
BPHYT_RS32225 -1.2 -1.7 hypothetical protein compare
BPHYT_RS28840 -1.2 -2.3 oxidoreductase compare
BPHYT_RS21975 -1.2 -1.8 2-dehydropantoate 2-reductase compare
BPHYT_RS03400 -1.2 -1.3 ATP-dependent DNA helicase RecG compare
BPHYT_RS17035 -1.2 -3.3 sugar kinase compare
BPHYT_RS17520 -1.2 -3.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS35230 -1.2 -1.7 type 11 methyltransferase compare
BPHYT_RS02650 -1.1 -1.6 membrane protein compare
BPHYT_RS33060 -1.1 -1.3 hypothetical protein compare
BPHYT_RS02860 -1.1 -1.1 membrane protein compare
BPHYT_RS06985 -1.1 -3.8 fumarate hydratase compare
BPHYT_RS06190 -1.1 -2.2 heptosyltransferase compare
BPHYT_RS07705 -1.1 -2.6 arginine succinyltransferase compare
BPHYT_RS04955 -1.0 -2.1 methionyl-tRNA synthetase compare
BPHYT_RS04965 -1.0 -4.9 ATP-binding protein compare
BPHYT_RS06400 -1.0 -3.3 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS16345 -1.0 -4.1 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS09445 -1.0 -4.1 trigger factor compare
BPHYT_RS01620 -1.0 -4.5 sensor histidine kinase compare
BPHYT_RS27370 -1.0 -1.7 CoA transferase compare
BPHYT_RS08955 -1.0 -3.5 homoserine dehydrogenase compare
BPHYT_RS12990 -1.0 -2.6 iron transporter compare
BPHYT_RS14380 -1.0 -4.0 elongation factor 4 compare
BPHYT_RS05010 -1.0 -2.9 RpiR family transcriptional regulator compare
BPHYT_RS02135 -1.0 -1.8 glyoxylate reductase compare
BPHYT_RS04455 -1.0 -1.3 glycosyl transferase compare
BPHYT_RS18760 -1.0 -1.9 flagellar biosynthesis protein FliT compare
BPHYT_RS17100 -1.0 -4.4 RNA pyrophosphohydrolase compare
BPHYT_RS09315 -1.0 -0.9 chemotaxis protein CheY compare
BPHYT_RS35245 -1.0 -2.1 hypothetical protein compare
BPHYT_RS21495 -1.0 -1.0 ABC transporter compare
BPHYT_RS06900 -1.0 -4.7 aspartate aminotransferase compare
BPHYT_RS13390 -0.9 -1.0 IclR family transcriptional regulator compare
BPHYT_RS12055 -0.9 -7.3 phosphoenolpyruvate synthase compare
BPHYT_RS16675 -0.9 -1.7 dihydroorotase compare
BPHYT_RS11600 -0.9 -3.3 biotin synthase compare
BPHYT_RS07350 -0.9 -1.6 ABC transporter ATP-binding protein compare
BPHYT_RS14140 -0.9 -1.9 phosphate transporter permease subunit PstC compare
BPHYT_RS14755 -0.9 -1.8 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS16880 -0.9 -1.2 malic enzyme compare
BPHYT_RS08060 -0.9 -2.7 ribosome maturation factor RimP compare
BPHYT_RS13645 -0.9 -8.0 threonine--tRNA ligase compare
BPHYT_RS13200 -0.9 -1.6 molybdopterin binding oxidoreductase compare
BPHYT_RS33990 -0.9 -0.8 ATPase compare
BPHYT_RS24540 -0.9 -2.8 DMSO reductase compare
BPHYT_RS25395 -0.9 -1.8 3-oxoacyl-ACP reductase compare
BPHYT_RS05615 -0.9 -1.4 hypothetical protein compare
BPHYT_RS35885 -0.9 -3.7 hypothetical protein compare
BPHYT_RS13705 -0.9 -2.7 chorismate synthase compare
BPHYT_RS15415 -0.9 -6.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS05365 -0.9 -1.2 3-ketoacyl-ACP reductase compare
BPHYT_RS01965 -0.9 -1.3 tRNA-Ala compare
BPHYT_RS34490 -0.9 -1.0 hypothetical protein compare
BPHYT_RS26025 -0.9 -0.8 hypothetical protein compare
BPHYT_RS14145 -0.9 -5.6 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS06375 -0.8 -3.3 ribonuclease compare
BPHYT_RS06075 -0.8 -2.8 hypothetical protein compare
BPHYT_RS16470 -0.8 -2.8 DeoR faimly transcriptional regulator compare
BPHYT_RS36220 -0.8 -1.2 hypothetical protein compare
BPHYT_RS35310 -0.8 -1.2 GCN5 family N-acetyltransferase compare
BPHYT_RS03100 -0.8 -1.1 peptidase compare
BPHYT_RS02285 -0.8 -2.8 cell division protein compare
BPHYT_RS32815 -0.8 -1.5 sugar ABC transporter compare
BPHYT_RS23910 -0.8 -1.5 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS09160 -0.8 -2.4 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS27450 -0.8 -1.8 alpha/beta hydrolase compare
BPHYT_RS04335 -0.8 -1.1 membrane protein compare
BPHYT_RS24565 -0.8 -1.5 membrane protein compare
BPHYT_RS11705 -0.8 -1.0 hypothetical protein compare
BPHYT_RS28440 -0.8 -1.3 heat shock Hsp20 compare
BPHYT_RS04430 -0.8 -1.5 amino acid ABC transporter ATPase compare
BPHYT_RS23540 -0.8 -2.1 RND transporter compare
BPHYT_RS26385 -0.8 -1.8 glutamine amidotransferase compare
BPHYT_RS28885 -0.8 -1.2 betaine-aldehyde dehydrogenase compare
BPHYT_RS29175 -0.8 -1.6 ABC transporter ATP-binding protein compare
BPHYT_RS17530 -0.8 -4.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS34235 -0.8 -1.3 putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS06605 -0.7 -2.5 NAD(P)H quinone oxidoreductase compare
BPHYT_RS23650 -0.7 -0.7 hypothetical protein compare
BPHYT_RS07900 -0.7 -1.1 hypothetical protein compare
BPHYT_RS21905 -0.7 -0.9 IclR family transcriptional regulator compare
BPHYT_RS08360 -0.7 -1.6 LysR family transcriptional regulator compare
BPHYT_RS03240 -0.7 -1.9 formate dehydrogenase accessory protein FdhD compare
BPHYT_RS11125 -0.7 -1.1 alkylhydroperoxidase compare
BPHYT_RS17920 -0.7 -1.1 protein CyaY compare
BPHYT_RS12985 -0.7 -1.1 amino acid acetyltransferase compare
BPHYT_RS07475 -0.7 -1.3 nitrate reductase compare
BPHYT_RS30830 -0.7 -1.4 MFS transporter compare
BPHYT_RS30915 -0.7 -1.6 hypothetical protein compare
BPHYT_RS11080 -0.7 -1.8 hypothetical protein compare
BPHYT_RS19785 -0.7 -1.2 chemotaxis protein CheY compare
BPHYT_RS10765 -0.7 -1.2 amidase compare
BPHYT_RS26550 -0.7 -1.1 Fis family transcriptional regulator compare
BPHYT_RS34810 -0.7 -2.4 RND transporter compare
BPHYT_RS10650 -0.7 -1.0 membrane protein compare
BPHYT_RS17380 -0.7 -4.5 ribulose-phosphate 3-epimerase compare
BPHYT_RS22360 -0.7 -1.9 response regulator receiver compare
BPHYT_RS05405 -0.7 -2.4 GCN5 family acetyltransferase compare
BPHYT_RS32155 -0.7 -2.5 type IV secretion system protein VirB11 compare
BPHYT_RS00815 -0.7 -0.9 hypothetical protein compare
BPHYT_RS33635 -0.7 -4.6 AMP nucleosidase compare
BPHYT_RS33645 -0.7 -1.8 homoserine kinase compare
BPHYT_RS05155 -0.7 -2.5 acetyltransferase GCN5 compare
BPHYT_RS29540 -0.7 -1.0 aldolase compare
BPHYT_RS27155 -0.7 -1.2 peroxiredoxin compare
BPHYT_RS12150 -0.7 -4.7 PII uridylyl-transferase compare
BPHYT_RS30395 -0.7 -1.3 small mechanosensitive ion channel protein MscS compare
BPHYT_RS03330 -0.7 -1.7 hypothetical protein compare
BPHYT_RS09500 -0.7 -3.0 glucose-6-phosphate isomerase compare
BPHYT_RS03645 -0.7 -1.8 tRNA dimethylallyltransferase compare
BPHYT_RS31345 -0.7 -1.0 malonate transporter compare
BPHYT_RS01945 -0.7 -1.8 hypothetical protein compare
BPHYT_RS23225 -0.7 -0.8 hypothetical protein compare
BPHYT_RS34850 -0.7 -1.2 acylphosphatase compare
BPHYT_RS02120 -0.7 -1.1 hypothetical protein compare
BPHYT_RS14895 -0.7 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS29110 -0.7 -2.1 DNA-directed DNA polymerase compare
BPHYT_RS29915 -0.7 -1.8 GntR family transcriptional regulator compare
BPHYT_RS23610 -0.7 -1.3 alpha/beta hydrolase compare
BPHYT_RS25870 -0.7 -0.7 type III secretion system ATPase compare
BPHYT_RS14130 -0.7 -2.7 phosphate ABC transporter ATP-binding protein compare
BPHYT_RS19435 -0.7 -1.6 16S rRNA methyltransferase compare
BPHYT_RS11395 -0.7 -1.6 hypothetical protein compare
BPHYT_RS26240 -0.6 -1.9 hypothetical protein compare
BPHYT_RS06775 -0.6 -2.4 nucleotide-binding protein compare
BPHYT_RS03740 -0.6 -1.4 hypothetical protein compare
BPHYT_RS26005 -0.6 -1.4 MarR family transcriptional regulator compare
BPHYT_RS31060 -0.6 -1.0 capsular polysaccharide biosynthesis protein compare
BPHYT_RS22765 -0.6 -2.0 beta-galactosidase compare
BPHYT_RS35505 -0.6 -1.4 short-chain dehydrogenase compare
BPHYT_RS12535 -0.6 -0.8 membrane protein compare
BPHYT_RS17405 -0.6 -0.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS13250 -0.6 -1.7 hypothetical protein compare
BPHYT_RS30485 -0.6 -0.8 ABC transporter ATP-binding protein compare
BPHYT_RS03320 -0.6 -2.1 lactoylglutathione lyase compare
BPHYT_RS35800 -0.6 -1.7 TetR family transcriptional regulator compare
BPHYT_RS10740 -0.6 -1.0 LuxR family transcriptional regulator compare
BPHYT_RS04630 -0.6 -1.9 amino acid ABC transporter permease compare
BPHYT_RS20235 -0.6 -2.6 iron ABC transporter compare
BPHYT_RS24770 -0.6 -1.8 DeoR family transcriptional regulator compare
BPHYT_RS21595 -0.6 -2.1 TetR family transcriptional regulator compare
BPHYT_RS03755 -0.6 -1.5 pilus assembly protein PilE compare
BPHYT_RS32260 -0.6 -1.0 hypothetical protein compare
BPHYT_RS17760 -0.6 -2.2 ABC transporter permease compare
BPHYT_RS14395 -0.6 -2.7 sugar dehydratase compare
BPHYT_RS28965 -0.6 -1.3 hypothetical protein compare
BPHYT_RS09330 -0.6 -4.6 phytoene synthase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in temperature experiments