Experiment set2IT064 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Ethanol carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO356_14335 +2.7 11.4 rRNA methyltransferase compare
AO356_03095 +2.5 18.7 protease HtpX compare
AO356_00880 +2.2 7.7 integration host factor subunit alpha compare
AO356_18010 +1.8 13.7 hypothetical protein compare
AO356_12515 +1.7 8.1 exodeoxyribonuclease III compare
AO356_11045 +1.6 14.0 phosphate-binding protein compare
AO356_01755 +1.6 6.5 trigger factor compare
AO356_11040 +1.5 14.3 phosphate ABC transporter permease compare
AO356_03435 +1.5 6.3 integration host factor subunit beta compare
AO356_00920 +1.5 4.6 cold-shock protein compare
AO356_10145 +1.4 4.4 molecular chaperone Hsp33 compare
AO356_11030 +1.4 12.6 phosphate ABC transporter ATP-binding protein compare
AO356_08585 +1.4 5.7 50S ribosomal protein L9 compare
AO356_18340 +1.3 8.3 leucyl-tRNA synthetase compare
AO356_02465 +1.3 3.6 carbonate dehydratase compare
AO356_10160 +1.2 10.7 ribosomal protein S6 modification protein compare
AO356_04565 +1.2 6.1 RNA polymerase subunit sigma compare
AO356_11035 +1.2 8.5 phosphate ABC transporter permease compare
AO356_16070 +1.2 5.7 poly(A) polymerase compare
AO356_18780 +1.1 2.1 carbon storage regulator compare
AO356_16260 +1.1 7.3 ribosomal-protein-alanine acetyltransferase compare
AO356_16080 +1.1 6.0 ATPase compare
AO356_29835 +1.1 2.1 LuxR family transcriptional regulator compare
AO356_06145 +1.1 5.1 SAM-dependent methyltransferase compare
AO356_28100 +1.1 3.8 sulfurtransferase compare
AO356_07385 +1.0 2.0 tRNA-Thr compare
AO356_13580 +1.0 8.3 cytochrome B compare
AO356_13585 +1.0 8.9 hypothetical protein compare
AO356_04885 +1.0 7.0 multidrug transporter compare
AO356_07400 +1.0 4.3 pseudouridine synthase compare
AO356_10185 +1.0 6.9 glutamate--cysteine ligase compare
AO356_16600 +1.0 2.7 malate:quinone oxidoreductase compare
AO356_17400 +0.9 3.9 transcriptional regulator compare
AO356_08215 +0.9 5.5 tRNA-dihydrouridine synthase B compare
AO356_09125 +0.9 5.9 GntR family transcriptional regulator compare
AO356_28910 +0.9 1.9 LysR family transcriptional regulator compare
AO356_08755 +0.9 3.1 aspartyl protease compare
AO356_10340 +0.9 7.1 phosphoserine phosphatase compare
AO356_27630 +0.9 3.4 chemotaxis protein CheY compare
AO356_16085 +0.9 2.9 MFS transporter compare
AO356_11005 +0.9 7.1 histidine kinase compare
AO356_12640 +0.9 2.1 cytochrome C compare
AO356_05065 +0.9 7.2 LacI family transcriptional regulator compare
AO356_23500 +0.9 5.5 TetR family transcriptional regulator compare
AO356_09420 +0.9 7.9 peptidase compare
AO356_12385 +0.9 6.1 LysR family transcriptional regulator compare
AO356_23155 +0.9 6.4 RpiR family transcriptional regulator compare
AO356_00575 +0.8 2.1 SCP-2 family sterol carrier protein compare
AO356_18755 +0.8 5.8 succinylglutamate desuccinylase compare
AO356_04325 +0.8 3.1 allophanate hydrolase compare
AO356_19145 +0.8 2.8 5,6-dimethylbenzimidazole synthase compare
AO356_02580 +0.8 4.0 GntR family transcriptional regulator compare
AO356_21200 +0.8 1.5 quercetin 2,3-dioxygenase compare
AO356_13320 +0.8 4.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO356_09495 +0.8 3.4 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO356_18920 +0.8 6.0 flagellar basal-body rod protein FlgC compare
AO356_17950 +0.8 5.9 histidine kinase compare
AO356_06065 +0.8 2.7 ArsC family transcriptional regulator compare
AO356_17770 +0.8 1.7 hypothetical protein compare
AO356_09055 +0.8 4.7 transcriptional regulator compare
AO356_02460 +0.8 2.1 hypothetical protein compare
AO356_15235 +0.8 5.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
AO356_27840 +0.8 4.7 sodium:proton antiporter compare
AO356_13480 +0.8 1.6 pilus assembly protein PilG compare
AO356_03865 +0.8 6.0 flagellar export chaperone FliS compare
AO356_10880 +0.8 1.6 hypothetical protein compare
AO356_07210 +0.8 2.3 histidine kinase compare
AO356_17985 +0.8 4.5 cold-shock protein compare
AO356_13655 +0.7 3.3 hypothetical protein compare
AO356_23215 +0.7 4.6 conjugal transfer protein TraR compare
AO356_03240 +0.7 3.8 transcription elongation factor GreB compare
AO356_04335 +0.7 5.0 hypothetical protein compare
AO356_22160 +0.7 4.7 arginyl-tRNA-protein transferase compare
AO356_26485 +0.7 1.5 hypothetical protein compare
AO356_29795 +0.7 1.9 amino acid transporter compare
AO356_19425 +0.7 1.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_19300 +0.7 6.0 peptidylprolyl isomerase compare
AO356_23420 +0.7 4.5 carboxynorspermidine decarboxylase compare
AO356_19240 +0.7 1.7 cupin compare
AO356_11400 +0.7 4.9 glutamate:protein symporter compare
AO356_26350 +0.7 1.8 acetyl-CoA acetyltransferase compare
AO356_03915 +0.7 4.5 flagellar biosynthesis protein FlgI compare
AO356_03495 +0.7 2.3 phosphoglycolate phosphatase compare
AO356_10155 +0.7 3.5 ribosomal protein S6 modification protein compare
AO356_15140 +0.7 1.5 homoserine dehydrogenase compare
AO356_02440 +0.7 4.7 cytochrome C oxidase Cbb3 compare
AO356_08955 +0.7 5.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO356_11275 +0.7 4.7 16S rRNA methyltransferase compare
AO356_08790 +0.7 5.4 cytoplasmic protein compare
AO356_21805 +0.7 2.6 LexA family transcriptional regulator compare
AO356_05245 +0.7 2.6 heme oxygenase compare
AO356_26730 +0.7 2.4 cupin compare
AO356_20450 +0.7 2.9 hypothetical protein compare
AO356_23130 +0.7 1.8 hypothetical protein compare
AO356_08590 +0.7 4.1 hypothetical protein compare
AO356_04580 +0.7 5.4 L-aspartate oxidase compare
AO356_09490 +0.7 1.5 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO356_04235 +0.7 2.8 LysR family transcriptional regulator compare
AO356_02430 +0.7 3.8 cytochrome C oxidase Cbb3 compare
AO356_08550 +0.6 5.1 transglutaminase compare
AO356_08605 +0.6 4.1 23S rRNA methyltransferase compare
AO356_17105 +0.6 4.2 hypothetical protein compare
AO356_03010 +0.6 2.1 glutaredoxin compare
AO356_07545 +0.6 5.4 transcriptional regulator PdhR compare
AO356_27585 +0.6 2.4 AcrR family transcriptional regulator compare
AO356_01275 +0.6 3.6 GntR family transcriptional regulator compare
AO356_02425 +0.6 4.6 cytochrome C oxidase Cbb3 compare
AO356_13565 +0.6 3.5 16S rRNA methyltransferase compare
AO356_03925 +0.6 3.8 flagellar basal-body rod protein FlgG compare
AO356_08445 +0.6 3.3 TetR family transcriptional regulator compare
AO356_18150 +0.6 2.0 hypothetical protein compare
AO356_20240 +0.6 1.9 L-arabinose 1-dehydrogenase (EC 1.1.1.46) (from data) compare
AO356_04935 +0.6 1.4 3-oxoadipate--succinyl-CoA transferase compare
AO356_15815 +0.6 1.5 gamma-glutamyl kinase compare
AO356_10445 +0.6 1.6 serine protease compare
AO356_06760 +0.6 2.6 transcriptional antiterminator compare
AO356_16975 +0.6 4.1 cytochrome C oxidase compare
AO356_13155 +0.6 5.0 spermidine/putrescine ABC transporter substrate-binding protein compare
AO356_25260 +0.6 1.1 iron transporter compare
AO356_13175 +0.6 3.5 spermidine/putrescine ABC transporter permease compare
AO356_17730 +0.6 3.6 GNAT family acetyltransferase compare
AO356_15395 +0.6 2.2 magnesium transporter compare
AO356_07955 +0.6 3.9 omega amino acid--pyruvate aminotransferase compare
AO356_11090 +0.6 2.3 aspartate ammonia-lyase compare
AO356_13455 +0.6 1.9 uracil phosphoribosyltransferase compare
AO356_16520 +0.6 1.1 Fe-S-oxidoreductase compare
AO356_06485 +0.6 3.4 hypothetical protein compare
AO356_05540 +0.6 1.4 cold-shock protein compare
AO356_05510 +0.6 3.4 succinylglutamate desuccinylase compare
AO356_04225 +0.6 2.1 FMN-dependent NADH-azoreductase compare
AO356_04055 +0.6 1.1 hypothetical protein compare
AO356_03900 +0.6 4.4 flagellar biosynthesis protein FlgL compare
AO356_13685 +0.6 2.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_28380 +0.6 1.9 ABC transporter permease compare
AO356_28945 +0.6 2.9 aminomethyltransferase compare
AO356_29855 +0.6 1.1 hypothetical protein compare
AO356_03775 +0.5 1.2 flagellar assembly protein FliO compare
AO356_18900 +0.5 3.6 flagellar biosynthesis protein FlgA compare
AO356_17785 +0.5 1.3 heme utilization protein compare
AO356_05205 +0.5 3.9 histidine kinase compare
AO356_27870 +0.5 2.6 ATPase compare
AO356_21835 +0.5 1.4 glyoxalase compare
AO356_12990 +0.5 3.6 5-formyltetrahydrofolate cyclo-ligase compare
AO356_09500 +0.5 2.2 polyhydroxyalkanoic acid system protein compare
AO356_08375 +0.5 1.0 acetyltransferase compare
AO356_13710 +0.5 1.5 fructose-bisphosphate aldolase compare
AO356_15160 +0.5 1.2 hypothetical protein compare
AO356_08555 +0.5 4.8 molybdopterin oxidoreductase compare
AO356_15735 +0.5 4.0 ABC transporter ATP-binding protein compare
AO356_28430 +0.5 1.2 hypothetical protein compare
AO356_09080 +0.5 1.4 thioredoxin compare
AO356_23240 +0.5 3.3 hypothetical protein compare
AO356_24695 +0.5 1.9 transcriptional regulator compare
AO356_03830 +0.5 2.7 flagellar motor switch protein FliG compare
AO356_13170 +0.5 4.4 spermidine/putrescine ABC transporter permease compare
AO356_27280 +0.5 1.1 XRE family transcriptional regulator compare
AO356_22345 +0.5 2.3 potassium transporter KefC compare
AO356_04605 +0.5 3.8 histidine kinase compare
AO356_00915 +0.5 3.6 hypothetical protein compare
AO356_04100 +0.5 2.1 ketosteroid isomerase compare
AO356_27775 +0.5 1.9 UDP pyrophosphate phosphatase compare
AO356_14355 +0.5 4.2 aminoglycoside phosphotransferase compare
AO356_05415 +0.5 2.6 hypothetical protein compare
AO356_04330 +0.5 3.1 allophanate hydrolase compare
AO356_25995 +0.5 0.9 acetylglucosaminylphosphatidylinositol deacetylase compare
AO356_13165 +0.5 4.0 transporter compare
AO356_02135 +0.5 1.7 hypothetical protein compare
AO356_18500 +0.5 2.8 hypothetical protein compare
AO356_08465 +0.5 1.3 protein hupE compare
AO356_00385 +0.5 0.9 peptidylprolyl isomerase compare
AO356_16395 +0.5 1.4 chemotaxis protein compare
AO356_18555 +0.5 1.7 peptidase M4 compare
AO356_23320 +0.5 2.0 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase compare
AO356_24730 +0.5 1.9 hypothetical protein compare
AO356_21215 +0.5 2.2 RNA polymerase subunit sigma-24 compare
AO356_18915 +0.5 3.2 flagellar biosynthesis protein FlgB compare
AO356_04965 +0.5 1.1 ATP-dependent helicase compare
AO356_06050 +0.5 3.9 protein-PII uridylyltransferase compare
AO356_10805 +0.5 4.3 hypothetical protein compare
AO356_08610 +0.5 3.1 exoribonuclease R compare
AO356_21515 +0.5 1.0 antitoxin compare
AO356_04875 +0.5 3.5 antibiotic transporter compare
AO356_09540 +0.5 0.9 twin-arginine protein translocation system subunit TatC compare
AO356_00125 +0.5 1.3 hypothetical protein compare
AO356_17250 +0.5 1.5 short-chain dehydrogenase compare
AO356_12635 +0.5 3.3 XRE family transcriptional regulator compare
AO356_20460 +0.5 2.0 hypothetical protein compare
AO356_03880 +0.5 3.2 flagellin compare
AO356_01530 +0.5 2.0 arginine N-succinyltransferase compare
AO356_19970 +0.5 1.8 hypothetical protein compare
AO356_17485 +0.5 2.2 elongation factor 4 compare
AO356_22950 +0.5 0.6 peptidylprolyl isomerase compare
AO356_17380 +0.5 3.7 amino acid ABC transporter substrate-binding protein compare
AO356_29490 +0.5 1.1 ArsR family transcriptional regulator compare
AO356_27040 +0.5 1.7 LysR family transcriptional regulator compare
AO356_27925 +0.5 1.4 MarR family transcriptional regulator compare
AO356_12820 +0.4 2.7 transcriptional regulator compare
AO356_01270 +0.4 2.8 (Fe-S)-binding protein compare
AO356_17395 +0.4 2.3 glutamine ABC transporter ATP-binding protein compare
AO356_28520 +0.4 1.2 multidrug MFS transporter compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source Ethanol in Pseudomonas fluorescens FW300-N2C3

For carbon source Ethanol across organisms