Experiment set2IT064 for Sinorhizobium meliloti 1021

Compare to:

LB, pH7

200 most important genes:

  gene name fitness t score description  
SMc01147 -3.2 -6.4 coproporphyrinogen III oxidase compare
SMc04296 -3.2 -1.5 cell division protein FtsZ compare
SMc02115 -3.0 -1.5 hypothetical protein compare
SMc01569 -2.9 -2.5 carbamoyl phosphate synthase small subunit compare
SMc02144 -2.7 -5.6 phosphate ABC transporter permease compare
SMc03763 -2.7 -4.5 cytosine-specific methyltransferase compare
SMc03850 -2.7 -2.3 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc03127 -2.6 -3.0 ABC transporter permease compare
SMc02858 -2.6 -1.3 chaperone protein DnaJ compare
SMc02850 -2.5 -4.0 DNA polymerase I compare
SMc02363 -2.5 -4.5 cytochrome C-type biogenesis transmembrane protein compare
SMc00427 -2.4 -3.5 peptide chain release factor RF-3 protein compare
SMc00987 -2.4 -3.1 hypothetical protein compare
SMc03849 -2.3 -2.0 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SMc02909 -2.2 -2.6 transglycosylase transmembrane protein compare
SMc00914 -2.2 -5.1 oxidoreductase compare
SMc02147 -2.2 -8.3 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc02362 -2.1 -4.5 cytochrome c-type biogenesis protein CcmE compare
SMc03967 -2.1 -2.3 Holliday junction resolvase compare
SMc04085 -2.1 -5.5 hypothetical protein compare
SMc03978 -2.0 -4.0 transketolase compare
SMc02833 -2.0 -1.7 penicillin-insensitive murein endopeptidase compare
SMc00856 -2.0 -1.9 hypothetical protein compare
SMc01568 -2.0 -1.9 hypothetical protein compare
SMc00302 -1.9 -3.2 hypothetical protein compare
SMc02140 -1.9 -1.7 phosphate regulon transcriptional regulatory protein compare
SMc02753 -1.8 -1.9 PTS system transporter subunit IIA compare
SMc01880 -1.8 -4.1 pantoate--beta-alanine ligase compare
SMc00352 -1.7 -2.2 acetyltransferase compare
SMc00619 -1.7 -1.8 hypothetical protein compare
SMc00963 -1.7 -5.4 hypothetical protein compare
SMc02141 -1.7 -3.7 phosphate transporter PhoU compare
SMa0753 -1.7 -1.0 hypothetical protein compare
SMc00334 -1.7 -1.5 cytidylate kinase compare
SMc02102 -1.6 -3.9 hypothetical protein compare
SMc02856 -1.6 -9.2 penicillin-binding protein compare
SMc00010 -1.6 -3.1 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc02510 -1.6 -1.1 ferric uptake regulation protein compare
SMc02867 -1.6 -3.6 multidrug-efflux system transmembrane protein compare
SMa0789 -1.6 -2.9 GntR family transcriptional regulator compare
SMc02435 -1.6 -3.6 methyltransferase compare
SMc01361 -1.5 -4.7 dihydroorotase compare
SMc03229 -1.5 -1.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00450 -1.5 -2.5 protoheme IX farnesyltransferase compare
SMc01845 -1.5 -2.8 transglycosylase transmembrane protein compare
SMc00013 -1.4 -2.2 cytochrome C oxidase subunit III transmembrane protein compare
SMc02234 -1.4 -2.3 hypothetical protein compare
SMc00580 -1.3 -3.3 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc02143 -1.3 -3.1 phosphate ABC transporter permease compare
SMc02485 -1.3 -1.8 signal peptide protein compare
SMc03124 -1.3 -3.5 periplasmic binding ABC transporter protein compare
SMc02683 -1.3 -2.6 hypothetical protein compare
SMc01183 -1.3 -1.1 LexA repressor compare
SMc00053 -1.3 -1.1 monovalent cation/H+ antiporter subunit C compare
SMc02232 -1.2 -2.8 hypothetical protein compare
SMc00815 -1.2 -1.2 inosine 5'-monophosphate dehydrogenase compare
SMc00073 -1.2 -1.8 hypothetical protein compare
SMc02149 -1.2 -1.9 hypothetical protein compare
SMc01342 -1.2 -4.9 hypothetical protein compare
SMc02077 -1.2 -2.2 exodeoxyribonuclease III protein compare
SMc01280 -1.2 -1.9 protease compare
SMc01850 -1.1 -3.4 hypothetical protein compare
SMc02050 -1.1 -4.2 trigger factor compare
SMc00556 -1.1 -3.1 DNA repair protein RadA compare
SMc01461 -1.1 -3.5 DNA helicase II protein compare
SMc01939 -1.1 -1.4 urease subunit beta compare
SMc01215 -1.1 -4.2 carbamoyl phosphate synthase large subunit compare
SMc02280 -1.0 -1.6 hypothetical protein compare
SMc04391 -1.0 -1.4 3-ketoacyl-ACP reductase compare
SMc02484 -1.0 -2.9 amino acid efflux transmembrane protein compare
SMc02145 -1.0 -0.8 signal peptide protein compare
SMc01881 -1.0 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SM_b20758 -1.0 -1.8 ArsR family transcriptional regulator compare
SMc01207 -1.0 -1.6 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMa5010 -1.0 -1.0 hypothetical protein compare
SMc03941 -1.0 -2.7 hypothetical protein compare
SMc00565 -1.0 -1.3 50S ribosomal protein L9 compare
SMc02114 -1.0 -2.7 hypothetical protein compare
SMa5031 -1.0 -1.6 hypothetical protein compare
SMc02685 -1.0 -1.6 hypothetical protein compare
SMc00419 -1.0 -3.1 glutathione synthetase compare
SMc01242 -1.0 -2.7 signal peptide protein compare
SMc02142 -1.0 -2.8 phosphate transporter ATP-binding protein compare
SMc04385 -1.0 -3.5 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc01579 -1.0 -1.1 hypothetical protein compare
SMc01853 -0.9 -2.6 hypothetical protein compare
SMc02036 -0.9 -2.5 transcriptional regulator compare
SMc01438 -0.9 -3.0 protease precursor signal peptide protein compare
SMc00085 -0.9 -3.7 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SM_b20746 -0.9 -1.0 hypothetical protein compare
SMc02309 -0.9 -4.3 arsenate reductase compare
SMc03242 -0.9 -2.6 GTP-binding protein compare
SM_b20258 -0.9 -2.9 transcriptional regulator compare
SMc02247 -0.9 -1.0 signal peptide protein compare
SMc01800 -0.9 -1.2 cytochrome C oxidase assembly transmembrane protein compare
SMc02576 -0.9 -1.3 acetyltransferase compare
SM_b22001 -0.9 -1.5 hypothetical protein compare
SMc02071 -0.9 -3.3 hydrolase glycosidase compare
SMc03128 -0.8 -2.6 ABC transporter permease compare
SMc00451 -0.8 -4.4 processing protease compare
SMc00088 -0.8 -1.6 hypothetical protein compare
SMc01235 -0.8 -6.4 excinuclease ABC subunit A compare
SM_b20075 -0.8 -1.3 hypothetical protein compare
SMc00711 -0.8 -2.9 cyclohexadienyl dehydrogenase compare
SMc04330 -0.8 -2.0 trimethylamine methyltransferase compare
SMc04404 -0.8 -1.3 amino acid efflux transmembrane protein compare
SMc00981 -0.8 -4.1 ferredoxin protein compare
SMc00492 -0.8 -0.8 hypothetical protein compare
SMc01984 -0.8 -2.8 cytochrome-C oxidase transmembrane protein compare
SMc02868 -0.8 -3.6 multidrug efflux system protein compare
SMc02425 -0.8 -2.0 transcriptional regulator compare
SM_b20050 -0.8 -1.2 hypothetical protein compare
SMc02827 -0.8 -1.7 hypothetical protein compare
SMc00760 -0.8 -2.4 recombinase A compare
SMc00667 -0.8 -0.9 hypothetical protein compare
SMc00928 -0.8 -1.2 signal peptide protein compare
SMc00557 -0.8 -3.8 alanine racemase compare
SMc02505 -0.8 -1.3 hypothetical protein compare
SMc00876 -0.8 -3.0 ATP-binding MRP protein compare
SMc01933 -0.8 -0.9 hypothetical protein compare
SMc01877 -0.8 -4.1 DNA repair protein compare
SMa2215 -0.8 -2.3 GntR family transcriptional regulator compare
SMc00823 -0.8 -1.4 hypothetical protein compare
SMc05009 -0.7 -1.9 nodulation protein NolR compare
SM_b20184 -0.7 -1.5 ABC transporter ATP-binding protein compare
SMc01208 -0.7 -2.4 peptidyl-prolyl cis-trans isomerase B protein compare
SMc01607 -0.7 -3.7 permease compare
SMc04003 -0.7 -1.3 50S ribosomal protein L36 compare
SMc01606 -0.7 -2.9 permease compare
SMc02709 -0.7 -2.9 hypothetical protein compare
SMc00296 -0.7 -4.5 POLY3-hydroxybutyrate polymerase compare
SMc03878 -0.7 -1.3 acetoacetyl-CoA reductase compare
SM_b21686 -0.7 -2.6 hypothetical protein compare
SMc01007 -0.7 -1.6 hypothetical protein compare
SMc03836 -0.7 -1.2 acyl-CoA thioesterase i protein compare
SMc00461 -0.7 -1.2 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMa0748 -0.7 -0.8 MucR family transcriptional regulator compare
SMc03993 -0.7 -2.1 hypothetical protein compare
SMa1240 -0.7 -0.8 NapF ferredoxin component of periplasmic nitrate reductase compare
SMc03746 -0.7 -1.4 hypothetical protein compare
SMa1595 -0.7 -1.7 hypothetical protein compare
SMc02306 -0.7 -1.0 hypothetical protein compare
SMc04329 -0.7 -2.6 hypothetical protein compare
SM_b20021 -0.7 -0.8 transcriptional regulator compare
SMc01146 -0.7 -1.5 deoxyribonucleotide triphosphate pyrophosphatase compare
SM_b21359 -0.7 -2.3 LysR family transcriptional regulator compare
SMa1365 -0.7 -1.0 ATP-binding protein compare
SMc00566 -0.7 -2.1 hypothetical protein compare
SMc04383 -0.7 -2.2 putative hydrolase, required for lysine catabolism (from data) compare
SMa0955 -0.7 -1.5 GntR family transcriptional regulator compare
SMa0543 -0.7 -1.3 hypothetical protein compare
SM_b20385 -0.7 -2.5 hypothetical protein compare
SMa1239 -0.6 -1.5 NapD component of periplasmic nitrate reductase compare
SM_b20555 -0.6 -2.5 hypothetical protein compare
SMc01969 -0.6 -3.1 hypothetical protein compare
SMc04040 -0.6 -1.2 heat shock protein compare
SM_b20880 -0.6 -3.8 ATP-dependent RNA helicase compare
SM_b20089 -0.6 -1.0 hypothetical protein compare
SM_b20143 -0.6 -0.9 oligopeptide ABC transporter permease compare
SM_b21551 -0.6 -0.9 hypothetical protein compare
SM_b21479 -0.6 -1.3 hypothetical protein compare
SM_b20889 -0.6 -1.6 hypothetical protein compare
SMc02582 -0.6 -1.5 hypothetical protein compare
SMc02841 -0.6 -2.8 methylated-DNA--protein-cysteine methyltransferase transcription regulator compare
SM_b20896 -0.6 -2.4 LysR family transcriptional regulator compare
SMc01178 -0.6 -1.3 multidrug transmembrane resistance signal peptide protein compare
SM_b20054 -0.6 -2.3 non-heme chloroperoxidase compare
SM_b20822 -0.6 -3.0 cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833 compare
SMc00579 -0.6 -2.9 dimethyladenosine transferase compare
SMa0738 -0.6 -2.0 CspA6 cold shock protein transcriptional regulator compare
SMa2195 -0.6 -1.8 ABC transporter ATP-binding protein compare
SMa1711 -0.6 -2.7 arginase compare
SMc03183 -0.6 -4.1 monovalent cation/H+ antiporter subunit F compare
SMc02862 -0.6 -2.3 Pit accessory protein compare
SMa5027 -0.6 -2.6 hypothetical protein compare
SM_b20450 -0.6 -4.4 regulatory protein compare
SM_b21213 -0.6 -2.0 serinethreonine protein phosphatase compare
SMc02906 -0.6 -0.6 hypothetical protein compare
SMc03140 -0.6 -2.5 transcriptional regulator compare
SMc01120 -0.6 -2.2 hypothetical protein compare
SMa1688 -0.6 -1.5 Two-component response regulator compare
SMc00147 -0.6 -1.9 hypothetical protein compare
SMc01716 -0.6 -2.7 sensor histidine kinase transmembrane protein compare
SM_b22015 -0.6 -2.3 LysR family transcriptional regulator compare
SM_b21115 -0.6 -0.5 response regulator protein compare
SMc00012 -0.6 -0.9 cytochrome C oxidase assembly protein compare
SMc01260 -0.6 -2.5 transcriptional regulator compare
SMa1053 -0.6 -1.1 hypothetical protein compare
SMc02521 -0.6 -1.7 glycerol-3-phosphate regulon repressor transcription regulator protein compare
SMc04121 -0.6 -1.3 uracil phosphoribosyltransferase compare
SMc00355 -0.6 -2.1 hypothetical protein compare
SMc00812 -0.6 -1.7 hypothetical protein compare
SMc00397 -0.6 -2.8 hypothetical protein compare
SMa0144 -0.6 -0.6 hypothetical protein compare
SMc01187 -0.6 -0.9 rare lipoprotein A compare
SMc00970 -0.6 -1.4 exodeoxyribonuclease VII small subunit compare
SMc02755 -0.6 -2.7 S-adenosyl-L-homocysteine hydrolase compare
SM_b21679 -0.6 -0.6 hypothetical protein compare
SMc04261 -0.6 -2.2 hypothetical protein compare
SM_b20862 -0.6 -1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in pH experiments