Experiment set2IT064 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

D-Galacturonic Acid monohydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS20350 +1.7 9.0 gliding motility lipoprotein GldH compare
CA265_RS19940 +1.5 12.9 hypothetical protein compare
CA265_RS19380 +1.5 9.3 beta-carotene 15,15'-monooxygenase compare
CA265_RS19945 +1.4 7.0 hypothetical protein compare
CA265_RS08775 +1.3 2.3 hypothetical protein compare
CA265_RS18140 +1.3 8.2 DUF4271 domain-containing protein compare
CA265_RS23675 +1.3 2.3 hypothetical protein compare
CA265_RS09335 +1.3 8.0 DUF4442 domain-containing protein compare
CA265_RS18225 +1.2 6.8 DNA-binding response regulator compare
CA265_RS19030 +1.2 6.6 hypothetical protein compare
CA265_RS24355 +1.2 5.3 transcriptional regulator compare
CA265_RS15070 +1.2 5.1 hypothetical protein compare
CA265_RS23505 +1.2 4.1 biopolymer transporter ExbD compare
CA265_RS22690 +1.2 8.0 hypothetical protein compare
CA265_RS15200 +1.1 5.0 hypothetical protein compare
CA265_RS23510 +1.1 5.7 energy transducer TonB compare
CA265_RS24790 +1.1 7.3 peptidylprolyl isomerase compare
CA265_RS22450 +1.1 4.8 GntR family transcriptional regulator compare
CA265_RS23515 +1.1 3.8 hypothetical protein compare
CA265_RS21905 +1.1 6.5 hypothetical protein compare
CA265_RS18120 +1.0 8.0 gliding motility protein GldM compare
CA265_RS10740 +1.0 7.5 DNA-binding response regulator compare
CA265_RS02765 +1.0 3.1 cell division protein ZapA compare
CA265_RS23520 +1.0 7.6 phosphate ABC transporter substrate-binding protein compare
CA265_RS04330 +1.0 4.5 transcriptional regulator compare
CA265_RS06870 +1.0 8.4 efflux transporter periplasmic adaptor subunit compare
CA265_RS18115 +1.0 5.8 gliding motility protein GldN compare
CA265_RS19575 +1.0 3.0 glycoside hydrolase compare
CA265_RS20365 +0.9 2.4 hypothetical protein compare
CA265_RS25030 +0.9 1.8 hypothetical protein compare
CA265_RS06875 +0.9 7.8 hydrophobe/amphiphile efflux-1 family RND transporter compare
CA265_RS23525 +0.9 7.0 hypothetical protein compare
CA265_RS19640 +0.9 4.0 hypothetical protein compare
CA265_RS23305 +0.9 1.3 hypothetical protein compare
CA265_RS13225 +0.9 6.7 exonuclease compare
CA265_RS19535 +0.9 5.2 hypothetical protein compare
CA265_RS19140 +0.9 2.0 tRNA-Ile compare
CA265_RS18125 +0.9 5.2 gliding motility protein GldL compare
CA265_RS21670 +0.8 1.7 hypothetical protein compare
CA265_RS19345 +0.8 5.8 hypothetical protein compare
CA265_RS19465 +0.8 4.6 protein tyrosine phosphatase compare
CA265_RS20315 +0.8 6.3 hypothetical protein compare
CA265_RS11575 +0.8 0.6 hypothetical protein compare
CA265_RS15085 +0.8 4.7 hypothetical protein compare
CA265_RS06585 +0.8 5.6 hypothetical protein compare
CA265_RS17565 +0.8 2.9 hypothetical protein compare
CA265_RS02045 +0.8 1.2 hypothetical protein compare
CA265_RS20640 +0.8 4.5 hypothetical protein compare
CA265_RS03295 +0.8 5.8 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS18780 +0.8 2.7 YicC family protein compare
CA265_RS10390 +0.8 1.2 hypothetical protein compare
CA265_RS01960 +0.7 0.8 division/cell wall cluster transcriptional repressor MraZ compare
CA265_RS15215 +0.7 5.1 two-component sensor histidine kinase compare
CA265_RS12665 +0.7 1.4 cold-shock protein compare
CA265_RS01100 +0.7 4.2 transcriptional regulator compare
CA265_RS16995 +0.7 3.1 hypothetical protein compare
CA265_RS04640 +0.7 3.5 efflux transporter periplasmic adaptor subunit compare
CA265_RS21865 +0.7 4.5 two-component sensor histidine kinase compare
CA265_RS08085 +0.7 4.6 aminodeoxychorismate lyase compare
CA265_RS10745 +0.7 5.9 diguanylate cyclase compare
CA265_RS19910 +0.7 3.4 GDSL family lipase compare
CA265_RS22800 +0.7 4.7 glycosyl transferase compare
CA265_RS23635 +0.7 5.2 gliding motility lipoprotein GldJ compare
CA265_RS18770 +0.7 2.7 hypothetical protein compare
CA265_RS15195 +0.7 4.5 hypothetical protein compare
CA265_RS23250 +0.7 2.3 hypothetical protein compare
CA265_RS25255 +0.7 4.6 methyltransferase type 11 compare
CA265_RS07460 +0.7 3.1 deoxynucleoside kinase compare
CA265_RS19500 +0.7 3.4 methyltransferase type 11 compare
CA265_RS23755 +0.7 4.4 lauroyl acyltransferase compare
CA265_RS17555 +0.7 4.7 hypothetical protein compare
CA265_RS18465 +0.7 3.5 RNA-splicing ligase RtcB compare
CA265_RS18855 +0.7 1.7 hypothetical protein compare
CA265_RS19965 +0.7 2.8 hypothetical protein compare
CA265_RS23620 +0.7 4.1 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
CA265_RS22260 +0.7 2.9 hypothetical protein compare
CA265_RS18130 +0.7 5.3 gliding motility-associated lipoprotein compare
CA265_RS15335 +0.6 3.5 NAD-dependent epimerase compare
CA265_RS01205 +0.6 4.2 import component protein compare
CA265_RS18090 +0.6 5.5 gliding motility protein compare
CA265_RS20040 +0.6 3.0 GNAT family N-acetyltransferase compare
CA265_RS20320 +0.6 5.8 hypothetical protein compare
CA265_RS01975 +0.6 1.6 cell division protein compare
CA265_RS15010 +0.6 2.9 hypothetical protein compare
CA265_RS24995 +0.6 3.8 hypothetical protein compare
CA265_RS16180 +0.6 3.2 secondary thiamine-phosphate synthase compare
CA265_RS01955 +0.6 2.8 VapC toxin family PIN domain ribonuclease compare
CA265_RS19050 +0.6 1.4 acylphosphatase compare
CA265_RS21130 +0.6 3.8 Co2+/Mg2+ efflux protein ApaG compare
CA265_RS01950 +0.6 1.5 hypothetical protein compare
CA265_RS00165 +0.6 2.2 hypothetical protein compare
CA265_RS20525 +0.6 1.0 hypothetical protein compare
CA265_RS22530 +0.6 3.0 RDD family protein compare
CA265_RS23640 +0.6 4.3 hypothetical protein compare
CA265_RS20695 +0.6 1.0 hypothetical protein compare
CA265_RS17560 +0.6 4.3 peptidylprolyl isomerase compare
CA265_RS19900 +0.6 2.9 pectin esterase compare
CA265_RS07755 +0.6 1.3 hypothetical protein compare
CA265_RS17885 +0.6 1.8 CopY family transcriptional repressor compare
CA265_RS14845 +0.6 4.1 transcriptional regulator compare
CA265_RS06775 +0.6 2.8 competence protein TfoX compare
CA265_RS13020 +0.6 3.0 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA265_RS04635 +0.6 4.8 CusA/CzcA family heavy metal efflux RND transporter compare
CA265_RS02555 +0.6 2.0 ATPase compare
CA265_RS21220 +0.6 3.4 hypothetical protein compare
CA265_RS16295 +0.6 3.5 LacI family transcriptional regulator compare
CA265_RS21255 +0.6 4.2 hypothetical protein compare
CA265_RS16685 +0.6 2.8 ATPase compare
CA265_RS04645 +0.6 3.9 cation transporter compare
CA265_RS04790 +0.6 2.5 hypothetical protein compare
CA265_RS23090 +0.6 2.4 transcriptional regulator compare
CA265_RS12800 +0.6 2.4 NAD(P)H-dependent oxidoreductase compare
CA265_RS15890 +0.6 3.7 DNA-binding protein compare
CA265_RS13695 +0.6 4.1 hypothetical protein compare
CA265_RS24575 +0.6 3.7 hypothetical protein compare
CA265_RS16470 +0.6 4.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CA265_RS25275 +0.6 2.5 TIGR00159 family protein compare
CA265_RS07110 +0.6 3.4 hypothetical protein compare
CA265_RS23650 +0.6 3.4 hypothetical protein compare
CA265_RS18570 +0.6 2.8 hypothetical protein compare
CA265_RS20440 +0.6 2.6 hypothetical protein compare
CA265_RS00690 +0.6 1.6 hypothetical protein compare
CA265_RS21000 +0.6 2.5 ribosome silencing factor compare
CA265_RS25435 +0.6 2.3 hypothetical protein compare
CA265_RS19590 +0.6 2.2 hypothetical protein compare
CA265_RS01220 +0.6 2.3 hypothetical protein compare
CA265_RS02315 +0.6 2.1 single-stranded DNA-binding protein compare
CA265_RS22460 +0.5 2.1 ABC transporter ATP-binding protein compare
CA265_RS22320 +0.5 1.5 hypothetical protein compare
CA265_RS23955 +0.5 3.6 glycosyl transferase family 4 compare
CA265_RS09720 +0.5 3.8 transglycosylase compare
CA265_RS01200 +0.5 2.4 hypothetical protein compare
CA265_RS21900 +0.5 4.1 two-component sensor histidine kinase compare
CA265_RS03260 +0.5 3.6 multidrug ABC transporter ATP-binding protein compare
CA265_RS20335 +0.5 4.7 SusC/RagA family TonB-linked outer membrane protein compare
CA265_RS00285 +0.5 2.4 hypothetical protein compare
CA265_RS21225 +0.5 3.3 hypothetical protein compare
CA265_RS05940 +0.5 1.2 hypothetical protein compare
CA265_RS15690 +0.5 2.6 NADPH-dependent FMN reductase compare
CA265_RS20330 +0.5 4.2 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA265_RS13470 +0.5 3.4 hypothetical protein compare
CA265_RS17720 +0.5 4.1 hypothetical protein compare
CA265_RS13815 +0.5 3.2 hypothetical protein compare
CA265_RS02180 +0.5 3.5 hypothetical protein compare
CA265_RS14825 +0.5 1.1 outer membrane protein assembly factor BamD compare
CA265_RS23985 +0.5 3.2 gliding motility lipoprotein GldB compare
CA265_RS21715 +0.5 2.9 hypothetical protein compare
CA265_RS14630 +0.5 3.5 AraC family transcriptional regulator compare
CA265_RS18990 +0.5 4.6 cell surface protein SprA compare
CA265_RS24450 +0.5 2.1 hypothetical protein compare
CA265_RS19645 +0.5 3.0 GNAT family N-acetyltransferase compare
CA265_RS00400 +0.5 3.1 hypothetical protein compare
CA265_RS21620 +0.5 2.7 hybrid sensor histidine kinase/response regulator compare
CA265_RS23435 +0.5 3.1 hypothetical protein compare
CA265_RS20310 +0.5 4.1 SusC/RagA family TonB-linked outer membrane protein compare
CA265_RS08825 +0.5 3.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CA265_RS01165 +0.5 1.0 hypothetical protein compare
CA265_RS18875 +0.5 2.7 hypothetical protein compare
CA265_RS05620 +0.5 0.7 hypothetical protein compare
CA265_RS17460 +0.5 2.2 RNA polymerase sigma-70 factor compare
CA265_RS18415 +0.5 2.5 hypothetical protein compare
CA265_RS21370 +0.5 2.4 peroxiredoxin compare
CA265_RS24370 +0.5 1.6 hypothetical protein compare
CA265_RS09415 +0.5 1.2 hypothetical protein compare
CA265_RS20980 +0.5 2.6 6-phosphofructokinase compare
CA265_RS05065 +0.5 3.1 hypothetical protein compare
CA265_RS20940 +0.5 2.7 hypothetical protein compare
CA265_RS24820 +0.5 1.8 adenylate cyclase compare
CA265_RS21445 +0.5 2.8 exodeoxyribonuclease III compare
CA265_RS08815 +0.5 2.6 hypothetical protein compare
CA265_RS22620 +0.5 0.8 hypothetical protein compare
CA265_RS23120 +0.5 1.2 hypothetical protein compare
CA265_RS08500 +0.5 3.5 endonuclease compare
CA265_RS01460 +0.5 2.3 hypothetical protein compare
CA265_RS22540 +0.5 1.7 hypothetical protein compare
CA265_RS13510 +0.5 2.9 TetR family transcriptional regulator compare
CA265_RS19980 +0.5 2.0 hypothetical protein compare
CA265_RS19930 +0.5 2.3 hypothetical protein compare
CA265_RS21455 +0.5 2.8 Formiminoglutamase (EC 3.5.3.8) (from data) compare
CA265_RS24115 +0.5 3.0 hypothetical protein compare
CA265_RS21470 +0.5 2.2 elongation factor P compare
CA265_RS24605 +0.5 0.6 hypothetical protein compare
CA265_RS05945 +0.5 1.3 polysaccharide biosynthesis protein GtrA compare
CA265_RS25410 +0.5 2.8 gluconate kinase compare
CA265_RS19400 +0.5 2.5 hypothetical protein compare
CA265_RS11090 +0.5 3.8 hypothetical protein compare
CA265_RS24560 +0.5 3.1 DUF5007 domain-containing protein compare
CA265_RS14260 +0.5 2.9 restriction endonuclease subunit R compare
CA265_RS23545 +0.5 0.6 NADH dehydrogenase subunit D compare
CA265_RS25205 +0.5 2.5 hypothetical protein compare
CA265_RS04335 +0.5 2.7 hypothetical protein compare
CA265_RS19155 +0.5 3.1 hypothetical protein compare
CA265_RS25200 +0.5 2.6 hypothetical protein compare
CA265_RS09035 +0.5 2.8 anti-anti-sigma factor compare
CA265_RS20670 +0.5 1.1 hypothetical protein compare
CA265_RS03835 +0.5 1.2 hypothetical protein compare
CA265_RS22010 +0.5 1.1 hypothetical protein compare
CA265_RS18755 +0.5 1.7 beta-ketoacyl-[acyl-carrier-protein] synthase II compare
CA265_RS23630 +0.5 1.9 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
CA265_RS22075 +0.5 1.9 hypothetical protein compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source D-Galacturonic Acid monohydrate in Pedobacter sp. GW460-11-11-14-LB5

For carbon source D-Galacturonic Acid monohydrate across organisms