Experiment set2IT064 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -6.9 -4.7 5,10-methylenetetrahydrofolate reductase compare
RR42_RS05860 -6.4 -4.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14390 -6.2 -4.3 3-isopropylmalate dehydratase compare
RR42_RS30655 -6.1 -4.2 LysR family transcriptional regulator compare
RR42_RS14400 -6.1 -4.2 isopropylmalate isomerase compare
RR42_RS14365 -6.0 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS19005 -5.9 -4.1 3-dehydroquinate synthase compare
RR42_RS33255 -5.8 -3.8 protein-tyrosine phosphatase compare
RR42_RS06485 -5.7 -6.7 chorismate synthase compare
RR42_RS11795 -5.4 -3.5 PEP synthetase regulatory protein compare
RR42_RS16250 -5.4 -7.3 sulfate adenylyltransferase compare
RR42_RS18305 -5.1 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS14385 -5.0 -6.8 3-isopropylmalate dehydrogenase compare
RR42_RS04475 -4.8 -13.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS33260 -4.7 -7.2 multidrug MFS transporter compare
RR42_RS19010 -4.7 -8.3 shikimate kinase compare
RR42_RS33240 -4.7 -16.4 GDP-L-fucose synthase compare
RR42_RS33250 -4.7 -5.6 tyrosine protein kinase compare
RR42_RS16255 -4.6 -8.0 sulfate adenylyltransferase compare
RR42_RS30660 -4.6 -9.0 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS33210 -4.6 -8.1 teichoic acid biosynthesis protein compare
RR42_RS01160 -4.5 -10.8 homoserine O-acetyltransferase compare
RR42_RS18300 -4.5 -6.8 anthranilate synthase subunit II compare
RR42_RS18295 -4.5 -12.8 anthranilate synthase component I compare
RR42_RS16270 -4.4 -10.6 sulfite reductase compare
RR42_RS15905 -4.4 -13.5 phosphoenolpyruvate carboxylase compare
RR42_RS14320 -4.1 -6.3 O-succinylhomoserine sulfhydrylase compare
RR42_RS33245 -4.0 -11.6 mannose-1-phosphate guanyltransferase compare
RR42_RS05990 -3.8 -8.5 aromatic amino acid aminotransferase compare
RR42_RS04535 -3.8 -5.7 cysteine synthase compare
RR42_RS33235 -3.7 -9.4 GDP-mannose 4,6-dehydratase compare
RR42_RS16280 -3.7 -8.4 transcriptional regulator compare
RR42_RS16265 -3.7 -3.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS21295 -3.6 -3.8 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS18855 -3.6 -4.2 preprotein translocase compare
RR42_RS00115 -3.5 -2.4 hypothetical protein compare
RR42_RS18990 -3.5 -16.4 glutamate synthase compare
RR42_RS21285 -3.5 -8.4 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS04460 -3.4 -6.7 chorismate mutase compare
RR42_RS16245 -3.4 -6.2 uroporphyrin-III methyltransferase compare
RR42_RS11790 -3.3 -7.5 phosphoenolpyruvate synthase compare
RR42_RS07380 -3.3 -5.4 dihydrolipoamide dehydrogenase compare
RR42_RS01845 -3.2 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS01290 -3.1 -6.4 thiamine biosynthesis protein ThiC compare
RR42_RS17645 -3.0 -5.2 shikimate dehydrogenase compare
RR42_RS07605 -3.0 -6.8 poly-beta-hydroxybutyrate polymerase compare
RR42_RS14360 -3.0 -1.7 tryptophan synthase subunit alpha compare
RR42_RS21290 -2.9 -5.4 L-lactate dehydrogenase, LutC subunit (from data) compare
RR42_RS15890 -2.9 -8.0 heme biosynthesis protein HemY compare
RR42_RS21300 -2.8 -6.2 GntR family transcriptional regulator compare
RR42_RS16275 -2.8 -4.0 membrane protein compare
RR42_RS07365 -2.7 -4.0 pyruvate dehydrogenase compare
RR42_RS07615 -2.6 -3.5 3-ketoacyl-ACP reductase compare
RR42_RS17105 -2.5 -11.5 Clp protease ClpX compare
RR42_RS21220 -2.5 -2.9 iron transporter FeoB compare
RR42_RS05955 -2.5 -1.8 hypothetical protein compare
RR42_RS04700 -2.4 -2.0 ribonuclease G compare
RR42_RS07115 -2.3 -1.7 hypothetical protein compare
RR42_RS04470 -2.3 -5.5 prephenate dehydrogenase compare
RR42_RS15895 -2.3 -6.2 uroporphyrinogen III methyltransferase compare
RR42_RS13910 -2.3 -7.4 glutamate racemase compare
RR42_RS18985 -2.2 -4.0 glutamate synthase compare
RR42_RS30640 -2.2 -5.1 DNA mismatch repair protein MutT compare
RR42_RS06095 -2.2 -3.9 hypothetical protein compare
RR42_RS21280 -2.2 -7.9 L-lactate permease compare
RR42_RS12040 -2.1 -9.8 MFS transporter compare
RR42_RS18850 -2.0 -2.3 preprotein translocase subunit TatC compare
RR42_RS14790 -1.9 -8.2 cobalamin biosynthesis protein CobD compare
RR42_RS01920 -1.9 -3.8 protoheme IX farnesyltransferase compare
RR42_RS02705 -1.8 -2.6 Holliday junction DNA helicase RuvA compare
RR42_RS05485 -1.8 -3.0 polynucleotide phosphorylase/polyadenylase compare
RR42_RS20205 -1.8 -2.4 chromosome partitioning protein compare
RR42_RS24605 -1.7 -8.2 TetR family transcriptional regulator compare
RR42_RS07565 -1.7 -8.1 transcription accessory protein compare
RR42_RS20195 -1.6 -1.4 ATPase F0F1 compare
RR42_RS16240 -1.6 -1.0 cobalamin biosynthesis protein CbiX compare
RR42_RS12550 -1.6 -4.2 hypothetical protein compare
RR42_RS01775 -1.6 -4.2 glutamate--cysteine ligase compare
RR42_RS34060 -1.6 -3.1 alpha/beta hydrolase compare
RR42_RS17355 -1.6 -0.9 hypothetical protein compare
RR42_RS08575 -1.6 -1.4 tail protein compare
RR42_RS07555 -1.6 -1.7 potassium transporter Kup compare
RR42_RS17060 -1.6 -10.9 histidine kinase compare
RR42_RS12590 -1.5 -1.2 50S ribosomal protein L9 compare
RR42_RS33355 -1.4 -4.3 membrane protein compare
RR42_RS15090 -1.4 -3.6 DNA helicase compare
RR42_RS26935 -1.4 -4.9 farnesyl-diphosphate farnesyltransferase compare
RR42_RS06630 -1.4 -2.4 integration host factor subunit alpha compare
RR42_RS13800 -1.4 -4.2 formyltetrahydrofolate deformylase compare
RR42_RS01380 -1.4 -1.8 membrane protein compare
RR42_RS18485 -1.4 -1.3 glutaredoxin compare
RR42_RS17390 -1.4 -4.9 ATP-dependent DNA helicase RecG compare
RR42_RS04895 -1.4 -7.5 serine/threonine protein phosphatase compare
RR42_RS12050 -1.4 -4.8 DNA polymerase compare
RR42_RS23305 -1.3 -1.3 hypothetical protein compare
RR42_RS02045 -1.3 -8.5 GTPase compare
RR42_RS11770 -1.3 -2.2 cyclase compare
RR42_RS32590 -1.3 -1.4 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS07360 -1.3 -2.8 ATPase compare
RR42_RS00725 -1.2 -2.8 hypothetical protein compare
RR42_RS32520 -1.2 -1.9 cytochrome C compare
RR42_RS12015 -1.2 -2.1 dihydrolipoamide acyltransferase compare
RR42_RS17720 -1.2 -1.9 sugar kinase compare
RR42_RS25785 -1.2 -2.7 TetR family transcriptional regulator compare
RR42_RS33575 -1.2 -2.4 hypothetical protein compare
RR42_RS27700 -1.2 -1.9 hypothetical protein compare
RR42_RS15415 -1.2 -2.5 membrane protein compare
RR42_RS35250 -1.2 -2.4 alpha/beta hydrolase compare
RR42_RS18270 -1.1 -3.3 murein transglycosylase compare
RR42_RS28885 -1.1 -4.9 membrane protein compare
RR42_RS18995 -1.1 -4.3 transposase compare
RR42_RS09060 -1.1 -2.0 glucose-6-phosphate isomerase compare
RR42_RS13905 -1.1 -3.5 fumarate hydratase compare
RR42_RS08180 -1.1 -1.3 hypothetical protein compare
RR42_RS17055 -1.1 -6.3 LuxR family transcriptional regulator compare
RR42_RS15455 -1.1 -4.7 membrane protein compare
RR42_RS15410 -1.1 -3.5 membrane protein compare
RR42_RS00830 -1.1 -3.6 cell division protein FtsN compare
RR42_RS08855 -1.1 -2.0 hypothetical protein compare
RR42_RS18310 -1.1 -0.8 indole-3-glycerol-phosphate synthase compare
RR42_RS12345 -1.0 -1.8 hypothetical protein compare
RR42_RS24460 -1.0 -3.3 hypothetical protein compare
RR42_RS17490 -1.0 -3.0 NADP transhydrogenase subunit alpha compare
RR42_RS32905 -1.0 -2.5 cytosine deaminase compare
RR42_RS02250 -1.0 -3.1 GntR family transcriptional regulator compare
RR42_RS33215 -1.0 -6.2 transferase compare
RR42_RS19765 -1.0 -1.7 arsenate reductase compare
RR42_RS26590 -1.0 -1.5 hypothetical protein compare
RR42_RS10355 -1.0 -4.2 AsnC family transcriptional regulator compare
RR42_RS19440 -1.0 -1.6 DNA repair protein compare
RR42_RS35875 -1.0 -5.8 UDP-galactose-4-epimerase compare
RR42_RS08110 -1.0 -1.8 hypothetical protein compare
RR42_RS15745 -1.0 -4.0 group1 glycosyl transferase compare
RR42_RS15035 -1.0 -3.4 ZIP zinc transporter compare
RR42_RS35895 -1.0 -3.1 PadR family transcriptional regulator compare
RR42_RS15420 -1.0 -3.4 hypothetical protein compare
RR42_RS12790 -1.0 -2.8 ACP phosphodiesterase compare
RR42_RS28720 -1.0 -1.6 hypothetical protein compare
RR42_RS16260 -1.0 -0.6 phosphoadenosine phosphosulfate reductase compare
RR42_RS19045 -1.0 -1.0 frataxin compare
RR42_RS08425 -1.0 -1.6 hypothetical protein compare
RR42_RS04770 -0.9 -1.1 methylglyoxal synthase compare
RR42_RS30320 -0.9 -1.3 hypothetical protein compare
RR42_RS32445 -0.9 -1.5 shikimate dehydrogenase compare
RR42_RS18820 -0.9 -3.9 cytochrome B compare
RR42_RS32050 -0.9 -1.4 AraC family transcriptional regulator compare
RR42_RS02775 -0.9 -1.7 molecular chaperone SurA compare
RR42_RS00315 -0.9 -3.3 iron-binding protein compare
RR42_RS18825 -0.9 -3.1 ubiquinol-cytochrome C reductase compare
RR42_RS26370 -0.9 -1.6 tautomerase compare
RR42_RS14075 -0.9 -3.3 anti-sigma factor compare
RR42_RS31290 -0.9 -1.6 XRE family transcriptional regulator compare
RR42_RS12925 -0.9 -1.7 ATPase compare
RR42_RS08450 -0.9 -1.5 hypothetical protein compare
RR42_RS10920 -0.9 -1.8 hypothetical protein compare
RR42_RS32085 -0.9 -0.9 hypothetical protein compare
RR42_RS23515 -0.9 -2.5 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS10415 -0.9 -1.1 hypothetical protein compare
RR42_RS15710 -0.9 -4.3 LPS biosynthesis protein compare
RR42_RS01910 -0.9 -4.3 cytochrome C oxidase subunit I compare
RR42_RS08365 -0.9 -4.6 hypothetical protein compare
RR42_RS09790 -0.9 -2.5 ABC transporter compare
RR42_RS02380 -0.9 -3.2 FAD-linked oxidase compare
RR42_RS26220 -0.9 -1.4 citrate lyase subunit beta compare
RR42_RS08995 -0.9 -2.0 hypothetical protein compare
RR42_RS00760 -0.9 -2.6 hypothetical protein compare
RR42_RS19825 -0.9 -1.9 LysR family transcriptional regulator compare
RR42_RS27090 -0.9 -1.6 chemotaxis protein CheV compare
RR42_RS12055 -0.9 -3.5 acyltransferase compare
RR42_RS22090 -0.8 -3.1 hypothetical protein compare
RR42_RS15470 -0.8 -1.0 biopolymer transporter ExbD compare
RR42_RS20210 -0.8 -3.0 16S rRNA methyltransferase compare
RR42_RS37320 -0.8 -1.1 hypothetical protein compare
RR42_RS02150 -0.8 -1.8 membrane protein compare
RR42_RS11520 -0.8 -1.7 ABC transporter ATP-binding protein compare
RR42_RS00940 -0.8 -3.1 biotin synthase compare
RR42_RS02420 -0.8 -0.8 SAM-dependent methyltransferase compare
RR42_RS36120 -0.8 -3.4 LysR family transcriptional regulator compare
RR42_RS13515 -0.8 -3.3 membrane protein compare
RR42_RS35220 -0.8 -0.9 peptide ABC transporter ATP-binding protein compare
RR42_RS17050 -0.8 -3.1 phosphoribosylglycinamide formyltransferase compare
RR42_RS28065 -0.8 -1.4 ribose-phosphate pyrophosphokinase compare
RR42_RS15015 -0.8 -0.8 exodeoxyribonuclease VII small subunit compare
RR42_RS13190 -0.8 -3.2 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS12985 -0.8 -3.7 histidine kinase compare
RR42_RS14055 -0.8 -1.8 elongation factor 4 compare
RR42_RS03080 -0.8 -2.2 recombinase RecA compare
RR42_RS14965 -0.8 -2.5 hypothetical protein compare
RR42_RS17505 -0.8 -4.9 NAD synthetase compare
RR42_RS18940 -0.8 -2.6 ABC transporter ATP-binding protein compare
RR42_RS22345 -0.8 -2.9 UDP-N-acetylmuramate--alanine ligase compare
RR42_RS13935 -0.8 -1.8 hemin transporter compare
RR42_RS14585 -0.8 -2.4 L-PSP family endoribonuclease compare
RR42_RS08170 -0.8 -2.3 hypothetical protein compare
RR42_RS06870 -0.8 -2.0 hypothetical protein compare
RR42_RS32235 -0.8 -3.0 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS12875 -0.8 -1.6 transcriptional regulator compare
RR42_RS15785 -0.8 -3.3 glycosyl transferase family 28 compare
RR42_RS33650 -0.8 -2.3 IclR family transcriptional regulator compare
RR42_RS36105 -0.8 -2.2 MarR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in carbon source experiments

For carbon source Sodium L-Lactate across organisms