Experiment set2IT064 for Ralstonia sp. UNC404CL21Col

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13250 -7.9 -5.4 phosphoserine phosphatase SerB compare
ABZR87_RS14505 -7.3 -5.0 phosphoribosylanthranilate isomerase compare
ABZR87_RS01810 -7.0 -4.8 glutamate 5-kinase compare
ABZR87_RS08630 -6.8 -13.4 dihydroorotase compare
ABZR87_RS14540 -6.6 -9.0 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14500 -6.5 -13.3 tryptophan synthase subunit beta compare
ABZR87_RS02595 -6.0 -14.0 shikimate kinase compare
ABZR87_RS16170 -6.0 -7.1 argininosuccinate lyase compare
ABZR87_RS09465 -5.9 -8.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02640 -5.9 -19.3 diaminopimelate decarboxylase compare
ABZR87_RS07360 -5.8 -16.0 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02570 -5.7 -26.3 glutamate synthase-related protein compare
ABZR87_RS02145 -5.7 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS08625 -5.5 -3.8 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS02160 -5.4 -8.3 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS13790 -5.4 -14.1 chorismate synthase compare
ABZR87_RS14950 -5.4 -3.7 acetolactate synthase small subunit compare
ABZR87_RS14490 -5.4 -10.3 tryptophan synthase subunit alpha compare
ABZR87_RS09450 -5.3 -10.8 prephenate dehydratase compare
ABZR87_RS22970 -5.3 -13.1 cystathionine gamma-synthase family protein compare
ABZR87_RS00190 -5.3 -12.7 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS00200 -5.2 -6.2 phosphoadenylyl-sulfate reductase compare
ABZR87_RS00835 -5.2 -3.6 argininosuccinate synthase compare
ABZR87_RS09445 -5.2 -16.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS14530 -5.2 -10.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS02565 -5.2 -7.9 glutamate synthase subunit beta compare
ABZR87_RS14535 -5.1 -7.7 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS05200 -5.1 -20.1 homoserine O-acetyltransferase compare
ABZR87_RS09935 -5.0 -4.9 amino acid aminotransferase compare
ABZR87_RS07380 -5.0 -17.7 FAD/FMN-binding oxidoreductase compare
ABZR87_RS04865 -5.0 -4.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS01110 -5.0 -13.1 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS02140 -4.9 -21.0 anthranilate synthase component I compare
ABZR87_RS05590 -4.9 -4.7 orotate phosphoribosyltransferase compare
ABZR87_RS05170 -4.7 -3.3 acetylglutamate kinase compare
ABZR87_RS02155 -4.7 -9.5 anthranilate phosphoribosyltransferase compare
ABZR87_RS02590 -4.7 -11.7 3-dehydroquinate synthase compare
ABZR87_RS07050 -4.6 -3.2 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS00185 -4.6 -4.4 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS16140 -4.5 -17.4 phosphoenolpyruvate carboxylase compare
ABZR87_RS12790 -4.4 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS00210 -4.4 -10.7 nitrite/sulfite reductase compare
ABZR87_RS22920 -4.4 -7.3 phosphogluconate dehydratase compare
ABZR87_RS09895 -4.1 -3.1 DUF1841 family protein compare
ABZR87_RS10240 -3.9 -2.7 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS00220 -3.7 -9.5 CysB family HTH-type transcriptional regulator compare
ABZR87_RS13300 -3.6 -12.2 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS00285 -3.5 -2.4 acetylornithine transaminase compare
ABZR87_RS12785 -3.5 -10.5 endopeptidase La compare
ABZR87_RS06770 -3.4 -7.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS05100 -3.3 -7.3 RNA polymerase-binding protein DksA compare
ABZR87_RS07665 -3.3 -12.7 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS11440 -3.3 -8.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS00205 -3.1 -3.1 DUF934 domain-containing protein compare
ABZR87_RS00195 -3.1 -7.1 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS14955 -3.0 -6.4 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS22915 -3.0 -14.5 glucose-6-phosphate dehydrogenase compare
ABZR87_RS15440 -3.0 -3.5 ribonuclease G compare
ABZR87_RS22910 -2.9 -2.5 6-phosphogluconolactonase compare
ABZR87_RS01605 -2.9 -8.9 shikimate dehydrogenase compare
ABZR87_RS01645 -2.8 -5.4 type II 3-dehydroquinate dehydratase compare
ABZR87_RS13475 -2.8 -10.6 PAS domain S-box protein compare
ABZR87_RS07320 -2.8 -7.6 gluconokinase compare
ABZR87_RS00435 -2.7 -11.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS10400 -2.7 -4.1 hypothetical protein compare
ABZR87_RS16180 -2.6 -3.9 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS23220 -2.5 -8.5 xylose ABC transporter ATP-binding protein compare
ABZR87_RS07635 -2.5 -3.3 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS08695 -2.5 -13.3 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS11815 -2.4 -9.0 [protein-PII] uridylyltransferase compare
ABZR87_RS13290 -2.3 -5.5 3-ketoacyl-ACP reductase compare
ABZR87_RS16185 -2.3 -2.3 dCTP deaminase compare
ABZR87_RS04785 -2.3 -9.8 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS09515 -2.3 -2.2 cysteine synthase CysM compare
ABZR87_RS10085 -2.3 -2.1 Rne/Rng family ribonuclease compare
ABZR87_RS12795 -2.3 -7.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS23225 -2.2 -7.8 sugar ABC transporter permease compare
ABZR87_RS13645 -2.1 -1.8 hypothetical protein compare
ABZR87_RS10610 -2.0 -2.3 inositol monophosphatase family protein compare
ABZR87_RS08700 -2.0 -9.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS23215 -2.0 -8.1 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS09635 -2.0 -3.0 ribosome small subunit-dependent GTPase A compare
ABZR87_RS01225 -2.0 -3.5 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS11125 -2.0 -7.0 cell division protein ZapE compare
ABZR87_RS10820 -1.9 -7.5 LysR substrate-binding domain-containing protein compare
ABZR87_RS19095 -1.9 -4.9 gluconate:H+ symporter compare
ABZR87_RS02480 -1.9 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS10785 -1.9 -6.4 exodeoxyribonuclease V subunit beta compare
ABZR87_RS09460 -1.8 -5.6 prephenate dehydrogenase compare
ABZR87_RS06645 -1.8 -2.2 TlpA disulfide reductase family protein compare
ABZR87_RS13285 -1.8 -9.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS07705 -1.8 -4.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS14115 -1.8 -10.0 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS10620 -1.7 -2.3 serine O-acetyltransferase compare
ABZR87_RS13175 -1.7 -1.4 tRNA-Leu compare
ABZR87_RS00215 -1.7 -3.9 sulfite exporter TauE/SafE family protein compare
ABZR87_RS23230 -1.7 -9.6 NAD(P)-dependent oxidoreductase compare
ABZR87_RS16960 -1.6 -5.1 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS00875 -1.6 -4.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS11065 -1.6 -6.8 nitrogen regulation protein NR(II) compare
ABZR87_RS05010 -1.6 -4.0 rod shape-determining protein RodA compare
ABZR87_RS23210 -1.6 -7.2 carbohydrate porin compare
ABZR87_RS11015 -1.5 -5.3 amino-acid N-acetyltransferase compare
ABZR87_RS11435 -1.5 -4.3 Mth938-like domain-containing protein compare
ABZR87_RS10550 -1.5 -1.4 outer membrane protein assembly factor BamC compare
ABZR87_RS10195 -1.5 -4.7 signal peptidase I compare
ABZR87_RS04125 -1.5 -4.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS02575 -1.4 -5.0 transposase compare
ABZR87_RS05065 -1.4 -3.6 tyrosine recombinase XerC compare
ABZR87_RS08640 -1.4 -5.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS05350 -1.3 -3.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS05205 -1.3 -5.0 methionine biosynthesis protein MetW compare
ABZR87_RS01430 -1.3 -10.3 LysR family transcriptional regulator compare
ABZR87_RS10780 -1.3 -3.4 PD-(D/E)XK nuclease family protein compare
ABZR87_RS15705 -1.3 -3.3 UvrD-helicase domain-containing protein compare
ABZR87_RS14675 -1.3 -1.3 glyoxalase compare
ABZR87_RS06715 -1.3 -2.4 PTS sugar transporter subunit IIA compare
ABZR87_RS06495 -1.3 -2.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS16735 -1.2 -10.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS03705 -1.2 -2.0 DUF2892 domain-containing protein compare
ABZR87_RS10980 -1.2 -1.0 tRNA-Leu compare
ABZR87_RS06705 -1.2 -9.2 glutamate--cysteine ligase compare
ABZR87_RS08655 -1.2 -4.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS05025 -1.2 -1.8 rod shape-determining protein MreC compare
ABZR87_RS07035 -1.2 -6.1 RNase adapter RapZ compare
ABZR87_RS14510 -1.1 -3.6 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS12295 -1.0 -2.8 muconate/chloromuconate family cycloisomerase compare
ABZR87_RS01910 -1.0 -2.8 peroxiredoxin compare
ABZR87_RS09615 -1.0 -2.3 50S ribosomal protein L19 compare
ABZR87_RS11940 -1.0 -2.5 SsrA-binding protein SmpB compare
ABZR87_RS05085 -1.0 -7.7 lactonase family protein compare
ABZR87_RS14495 -1.0 -2.2 site-specific DNA-methyltransferase compare
ABZR87_RS14745 -1.0 -1.5 urease subunit gamma compare
ABZR87_RS08985 -1.0 -6.0 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS11970 -0.9 -2.2 hypothetical protein compare
ABZR87_RS11925 -0.9 -6.8 phosphoenolpyruvate synthase compare
ABZR87_RS01685 -0.9 -4.5 histone H1-like DNA-binding protein compare
ABZR87_RS01760 -0.9 -1.1 PP0621 family protein compare
ABZR87_RS07965 -0.9 -3.4 recombinase RecA compare
ABZR87_RS15405 -0.9 -2.5 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS05580 -0.9 -2.2 diaminopimelate epimerase compare
ABZR87_RS08505 -0.9 -0.8 CpaE family protein compare
ABZR87_RS16125 -0.9 -4.8 heme biosynthesis protein HemY compare
ABZR87_RS15715 -0.8 -5.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS10045 -0.8 -2.1 lactate utilization protein C compare
ABZR87_RS21285 -0.8 -2.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS16225 -0.8 -2.9 twin-arginine translocation signal domain-containing protein compare
ABZR87_RS00830 -0.8 -1.9 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS21365 -0.8 -1.2 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS01245 -0.8 -2.9 Dps family protein compare
ABZR87_RS07675 -0.8 -5.4 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS11375 -0.8 -4.5 inorganic phosphate transporter compare
ABZR87_RS11070 -0.8 -5.1 nitrogen regulation protein NR(I) compare
ABZR87_RS16730 -0.8 -4.0 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS09500 -0.8 -3.4 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS19105 -0.8 -2.1 amidohydrolase family protein compare
ABZR87_RS04500 -0.8 -1.3 hypothetical protein compare
ABZR87_RS04105 -0.7 -2.1 ATP synthase subunit I compare
ABZR87_RS22690 -0.7 -1.6 XRE family transcriptional regulator compare
ABZR87_RS05060 -0.7 -2.7 DUF484 family protein compare
ABZR87_RS20730 -0.7 -1.1 hypothetical protein compare
ABZR87_RS05145 -0.7 -1.3 copper chaperone PCu(A)C compare
ABZR87_RS10170 -0.7 -3.0 RseA family anti-sigma factor compare
ABZR87_RS15505 -0.7 -1.0 DNA polymerase III subunit alpha compare
ABZR87_RS17310 -0.7 -3.3 PadR family transcriptional regulator compare
ABZR87_RS08175 -0.7 -2.2 GntR family transcriptional regulator compare
ABZR87_RS16660 -0.7 -3.2 helix-turn-helix domain-containing protein compare
ABZR87_RS07020 -0.7 -5.6 dynamin-like GTPase family protein compare
ABZR87_RS21170 -0.7 -2.3 ABC transporter ATP-binding protein compare
ABZR87_RS11460 -0.7 -2.5 gephyrin-like molybdotransferase Glp compare
ABZR87_RS15500 -0.7 -4.0 glycosyltransferase compare
ABZR87_RS22485 -0.7 -4.9 FAD-dependent oxidoreductase compare
ABZR87_RS11770 -0.7 -3.3 succinyldiaminopimelate transaminase compare
ABZR87_RS10120 -0.7 -0.8 YceD family protein compare
ABZR87_RS08750 -0.7 -3.3 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS22585 -0.7 -1.0 methyl-accepting chemotaxis protein compare
ABZR87_RS15250 -0.7 -4.1 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS18170 -0.7 -1.1 hypothetical protein compare
ABZR87_RS23380 -0.6 -1.2 chemotaxis protein CheW compare
ABZR87_RS06845 -0.6 -3.8 heme o synthase compare
ABZR87_RS08650 -0.6 -4.7 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS15240 -0.6 -1.0 YicC/YloC family endoribonuclease compare
ABZR87_RS11245 -0.6 -2.7 translational GTPase TypA compare
ABZR87_RS12735 -0.6 -4.2 winged helix DNA-binding protein compare
ABZR87_RS22415 -0.6 -1.0 universal stress protein compare
ABZR87_RS05015 -0.6 -2.7 penicillin-binding protein 2 compare
ABZR87_RS16845 -0.6 -0.8 hypothetical protein compare
ABZR87_RS09440 -0.6 -3.2 DUF2059 domain-containing protein compare
ABZR87_RS16760 -0.6 -1.9 GGDEF domain-containing protein compare
ABZR87_RS14235 -0.6 -3.6 formyltetrahydrofolate deformylase compare
ABZR87_RS21795 -0.6 -3.6 NUDIX domain-containing protein compare
ABZR87_RS12800 -0.6 -2.3 trigger factor compare
ABZR87_RS05645 -0.6 -2.2 SDR family oxidoreductase compare
ABZR87_RS01800 -0.6 -3.0 RNA pyrophosphohydrolase compare
ABZR87_RS09505 -0.6 -3.9 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS11140 -0.6 -1.9 cbb3-type cytochrome oxidase assembly protein CcoS compare
ABZR87_RS23445 -0.6 -1.7 malonate decarboxylase subunit delta compare
ABZR87_RS02075 -0.6 -0.7 23S ribosomal RNA compare
ABZR87_RS10080 -0.6 -3.8 GTP 3',8-cyclase MoaA compare
ABZR87_RS12750 -0.6 -1.7 ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in carbon source experiments

For carbon source D-Glucose across organisms