Experiment set2IT064 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without Tyrosine

200 most important genes:

  gene name fitness t score description  
BBR_RS18735 -8.2 -15.7 hypothetical protein compare
BBR_RS16750 -7.5 -7.3 ParA family protein compare
BBR_RS10660 -7.2 -32.7 esterase compare
BBR_RS10445 -7.0 -12.6 HlyC/CorC family transporter compare
BBR_RS11025 -7.0 -14.9 aspartate-semialdehyde dehydrogenase compare
BBR_RS11020 -6.9 -11.5 ACT domain-containing protein compare
BBR_RS18570 -6.7 -9.2 phosphoserine transaminase compare
BBR_RS17365 -6.7 -4.6 ABC transporter permease compare
BBR_RS19475 -6.6 -17.2 AEC family transporter compare
BBR_RS19055 -6.6 -3.5 ferredoxin family protein compare
BBR_RS17375 -6.5 -6.4 amino acid ABC transporter ATP-binding protein compare
BBR_RS11015 -6.5 -13.3 aspartate kinase compare
BBR_RS18955 -6.5 -13.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS13035 -6.4 -4.3 ABC transporter permease compare
BBR_RS19535 -6.2 -12.0 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS16970 -6.2 -6.0 phosphoglycerate dehydrogenase compare
BBR_RS13040 -6.2 -7.4 CHAP domain-containing protein compare
BBR_RS19700 -6.2 -32.9 ATP-dependent chaperone ClpB compare
BBR_RS14210 -6.1 -4.0 hypothetical protein compare
BBR_RS13070 -6.1 -1.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS17990 -6.0 -14.6 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS17370 -5.9 -10.6 ABC transporter substrate-binding protein compare
BBR_RS18690 -5.8 -8.0 diacylglycerol kinase compare
BBR_RS19240 -5.8 -20.5 LacI family transcriptional regulator compare
BBR_RS11540 -5.8 -5.0 DUF1727 domain-containing protein compare
BBR_RS11205 -5.8 -4.0 HPr family phosphocarrier protein compare
BBR_RS15680 -5.8 -7.9 succinate--CoA ligase subunit alpha compare
BBR_RS15505 -5.8 -9.6 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS14215 -5.7 -6.2 peptidase compare
BBR_RS19355 -5.7 -3.0 tRNA-Gly compare
BBR_RS18695 -5.6 -3.9 PRD domain-containing protein compare
BBR_RS12235 -5.6 -1.7 hypothetical protein compare
BBR_RS15675 -5.6 -9.3 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS10900 -5.6 -3.8 molecular chaperone DnaK compare
BBR_RS19945 -5.6 -12.4 MarR family transcriptional regulator compare
BBR_RS16600 -5.5 -12.4 aconitate hydratase AcnA compare
BBR_RS16820 -5.5 -5.0 RNA polymerase sigma factor RpoE compare
BBR_RS12995 -5.4 -10.1 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS17460 -5.4 -12.7 TPM domain-containing protein compare
BBR_RS13735 -5.4 -1.7 Lon protease compare
BBR_RS20430 -5.4 -3.7 hypothetical protein compare
BBR_RS16675 -5.4 -3.7 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS13030 -5.3 -7.6 cell division ATP-binding protein FtsE compare
BBR_RS16425 -5.3 -5.4 DUF3071 domain-containing protein compare
BBR_RS11210 -5.3 -3.7 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS19555 -5.2 -33.7 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BBR_RS14070 -5.2 -3.6 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS15170 -5.2 -10.5 HlyC/CorC family transporter compare
BBR_RS17135 -5.2 -3.1 RluA family pseudouridine synthase compare
BBR_RS16540 -5.1 -7.3 XRE family transcriptional regulator compare
BBR_RS19645 -5.1 -17.3 RNA degradosome polyphosphate kinase compare
BBR_RS12460 -5.1 -11.3 LacI family DNA-binding transcriptional regulator compare
BBR_RS16155 -5.1 -13.2 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS17615 -5.0 -10.1 phosphoserine phosphatase SerB compare
BBR_RS19165 -4.9 -3.8 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS12900 -4.9 -4.0 DeoR/GlpR transcriptional regulator compare
BBR_RS15085 -4.9 -2.6 3-dehydroquinate synthase compare
BBR_RS19270 -4.8 -1.5 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS15070 -4.8 -3.3 endolytic transglycosylase MltG compare
BBR_RS13490 -4.8 -1.5 30S ribosomal protein S7 compare
BBR_RS12500 -4.6 -1.4 sugar ABC transporter permease compare
BBR_RS10620 -4.6 -4.5 phosphoprotein phosphatase compare
BBR_RS13700 -4.6 -14.2 diaminopimelate epimerase compare
BBR_RS19155 -4.6 -10.7 phosphate ABC transporter, permease protein PstA compare
BBR_RS11505 -4.5 -19.2 TetR/AcrR family transcriptional regulator compare
BBR_RS11720 -4.5 -8.7 DUF2469 domain-containing protein compare
BBR_RS15080 -4.4 -3.1 chorismate synthase compare
BBR_RS17290 -4.4 -11.4 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS19190 -4.4 -9.0 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS12545 -4.4 -3.0 DUF4012 domain-containing protein compare
BBR_RS18700 -4.4 -10.9 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS13820 -4.3 -1.3 ATP-binding protein compare
BBR_RS17905 -4.3 -28.7 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS15520 -4.2 -2.9 shikimate 5-dehydrogenase compare
BBR_RS11515 -4.1 -20.5 ammonium transporter compare
BBR_RS19470 -4.0 -23.7 succinyl-diaminopimelate desuccinylase compare
BBR_RS20910 -4.0 -3.0 DUF1829 domain-containing protein compare
BBR_RS16605 -4.0 -10.7 hypothetical protein compare
BBR_RS16610 -4.0 -7.1 hypothetical protein compare
BBR_RS14365 -4.0 -9.9 hypothetical protein compare
BBR_RS11770 -3.9 -6.1 chorismate mutase compare
BBR_RS15180 -3.9 -11.3 long-chain fatty acid--CoA ligase compare
BBR_RS16965 -3.9 -3.8 ATP-dependent DNA helicase compare
BBR_RS14370 -3.9 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS10755 -3.9 -9.3 adenylosuccinate synthase compare
BBR_RS19265 -3.8 -13.7 pyrrolidone-carboxylate peptidase compare
BBR_RS19740 -3.8 -19.6 DUF2142 domain-containing protein compare
BBR_RS19160 -3.8 -1.6 phosphate ABC transporter permease subunit PstC compare
BBR_RS18725 -3.7 -5.0 ribonuclease HI compare
BBR_RS19120 -3.6 -12.1 helicase compare
BBR_RS19540 -3.6 -2.5 homoserine dehydrogenase compare
BBR_RS13300 -3.6 -1.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS18745 -3.5 -2.0 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS14205 -3.5 -4.5 hypothetical protein compare
BBR_RS12905 -3.5 -4.0 galactose-1-phosphate uridylyltransferase compare
BBR_RS20465 -3.4 -11.7 chromosome partitioning protein compare
BBR_RS14625 -3.4 -8.7 pyrroline-5-carboxylate reductase compare
BBR_RS10910 -3.4 -14.7 molecular chaperone DnaJ compare
BBR_RS11500 -3.3 -13.2 glycosyltransferase family 2 protein compare
BBR_RS20450 -3.3 -17.2 murein biosynthesis integral membrane protein MurJ compare
BBR_RS16940 -3.2 -3.8 hypothetical protein compare
BBR_RS15090 -3.2 -1.4 type II 3-dehydroquinate dehydratase compare
BBR_RS13740 -3.2 -6.0 DUF3052 domain-containing protein compare
BBR_RS12770 -3.2 -4.3 hypothetical protein compare
BBR_RS13125 -3.2 -1.8 ABC transporter permease compare
BBR_RS19755 -3.2 -14.2 glycosyl transferase compare
BBR_RS14265 -3.1 -7.0 Solute-binding protein of ABC transporter system for metals compare
BBR_RS14330 -3.1 -2.2 glycogen debranching enzyme GlgX compare
BBR_RS12660 -3.1 -10.2 EpsG family protein compare
BBR_RS16670 -3.1 -3.8 hypothetical protein compare
BBR_RS15805 -3.0 -7.6 prolipoprotein diacylglyceryl transferase compare
BBR_RS16430 -3.0 -3.2 nucleotide pyrophosphatase compare
BBR_RS12760 -3.0 -8.6 hypothetical protein compare
BBR_RS13805 -2.9 -2.9 hypothetical protein compare
BBR_RS19260 -2.9 -19.0 hypothetical protein compare
BBR_RS15455 -2.9 -2.0 orotate phosphoribosyltransferase compare
BBR_RS11595 -2.9 -5.1 50S ribosomal protein L9 compare
BBR_RS14230 -2.8 -7.7 HAMP domain-containing histidine kinase compare
BBR_RS10625 -2.8 -2.2 FHA domain-containing protein compare
BBR_RS16975 -2.8 -5.1 transcriptional repressor NrdR compare
BBR_RS19390 -2.8 -1.9 hypothetical protein compare
BBR_RS14540 -2.7 -4.3 Na+/H+ antiporter NhaA compare
BBR_RS10720 -2.7 -13.4 PDZ domain-containing protein compare
BBR_RS15860 -2.6 -1.1 DUF2316 domain-containing protein compare
BBR_RS12375 -2.6 -1.7 pantetheine-phosphate adenylyltransferase compare
BBR_RS17360 -2.6 -4.2 amino acid ABC transporter permease compare
BBR_RS11220 -2.5 -11.9 YbhB/YbcL family Raf kinase inhibitor-like protein compare
BBR_RS16905 -2.5 -4.3 hypothetical protein compare
BBR_RS16245 -2.5 -3.3 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS19370 -2.5 -5.0 type I polyketide synthase compare
BBR_RS13770 -2.5 -3.8 DNA repair protein RecO compare
BBR_RS12810 -2.5 -11.6 hypothetical protein compare
BBR_RS12700 -2.5 -10.0 hypothetical protein compare
BBR_RS12635 -2.5 -14.7 polysaccharide biosynthesis protein compare
BBR_RS10905 -2.4 -3.0 nucleotide exchange factor GrpE compare
BBR_RS11680 -2.4 -12.3 23S rRNA methyltransferase compare
BBR_RS19125 -2.4 -10.0 hypothetical protein compare
BBR_RS13370 -2.4 -3.6 phosphoribosylamine--glycine ligase compare
BBR_RS19760 -2.4 -2.8 polysaccharide ABC transporter ATPase compare
BBR_RS15130 -2.4 -2.3 metal-sulfur cluster assembly factor compare
BBR_RS20455 -2.4 -8.6 thioredoxin-disulfide reductase compare
BBR_RS16555 -2.4 -1.0 DNA translocase FtsK compare
BBR_RS18180 -2.3 -9.6 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS17455 -2.3 -7.7 DNA-binding response regulator compare
BBR_RS12705 -2.3 -11.4 hypothetical protein compare
BBR_RS15655 -2.3 -5.6 Holliday junction branch migration protein RuvA compare
BBR_RS14075 -2.3 -6.6 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS18565 -2.3 -1.8 CHAP domain-containing protein compare
BBR_RS18215 -2.3 -7.5 AI-2E family transporter compare
BBR_RS17495 -2.3 -11.1 DUF58 domain-containing protein compare
BBR_RS12640 -2.2 -10.8 glycosyl transferase compare
BBR_RS20460 -2.2 -5.5 chromosome partitioning protein ParB compare
BBR_RS19375 -2.2 -1.7 acyl-CoA carboxylase subunit beta compare
BBR_RS20920 -2.2 -3.4 hypothetical protein compare
BBR_RS14280 -2.2 -2.1 dephospho-CoA kinase compare
BBR_RS18035 -2.2 -2.2 oligoribonuclease compare
BBR_RS12980 -2.2 -12.3 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS19095 -2.1 -9.3 magnesium transporter compare
BBR_RS14260 -2.1 -1.3 ABC transporter ATP-binding protein compare
BBR_RS12630 -2.1 -12.6 glycosyltransferase family 1 protein compare
BBR_RS16250 -2.1 -4.0 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS12175 -2.1 -7.0 TetR/AcrR family transcriptional regulator compare
BBR_RS13835 -2.1 -7.9 FAD-dependent oxidoreductase compare
BBR_RS15845 -2.1 -1.2 hypothetical protein compare
BBR_RS20420 -2.0 -9.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS15360 -2.0 -3.1 hypothetical protein compare
BBR_RS19445 -2.0 -14.1 glutamate 5-kinase compare
BBR_RS17640 -2.0 -2.8 DNA-directed RNA polymerase subunit omega compare
BBR_RS11355 -2.0 -5.9 hypothetical protein compare
BBR_RS17865 -2.0 -5.1 MarR family transcriptional regulator compare
BBR_RS13750 -2.0 -2.9 DivIVA domain-containing protein compare
BBR_RS19050 -2.0 -14.2 succinyldiaminopimelate transaminase compare
BBR_RS12310 -2.0 -1.9 signal recognition particle protein compare
BBR_RS15230 -1.9 -5.4 elongation factor 4 compare
BBR_RS15915 -1.9 -1.2 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS13450 -1.9 -2.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS18550 -1.9 -7.5 universal stress protein compare
BBR_RS12045 -1.9 -4.3 hypothetical protein compare
BBR_RS12645 -1.8 -6.7 acyltransferase compare
BBR_RS11185 -1.8 -2.4 type I DNA topoisomerase compare
BBR_RS15665 -1.8 -1.8 preprotein translocase subunit YajC compare
BBR_RS18555 -1.8 -7.6 NlpC/P60 family protein compare
BBR_RS10615 -1.8 -3.5 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS18375 -1.8 -9.4 ATP-dependent helicase compare
BBR_RS17510 -1.8 -7.6 VWA domain-containing protein compare
BBR_RS19905 -1.8 -1.1 methionine--tRNA ligase compare
BBR_RS12365 -1.8 -5.7 DUF177 domain-containing protein compare
BBR_RS17720 -1.8 -9.2 CRISPR-associated helicase/endonuclease Cas3 compare
BBR_RS18050 -1.7 -2.5 threonylcarbamoyl-AMP synthase compare
BBR_RS14190 -1.7 -7.3 transcriptional regulator compare
BBR_RS12720 -1.7 -2.4 hypothetical protein compare
BBR_RS17680 -1.7 -5.0 hypothetical protein compare
BBR_RS15370 -1.7 -2.7 macro domain-containing protein compare
BBR_RS17860 -1.7 -10.1 ABC transporter ATP-binding protein compare
BBR_RS12975 -1.7 -9.4 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS17490 -1.7 -10.2 MoxR family ATPase compare
BBR_RS14660 -1.7 -1.7 transcriptional regulator compare
BBR_RS11675 -1.7 -1.2 hypothetical protein compare
BBR_RS14240 -1.6 -5.9 1,4-alpha-glucan branching protein GlgB compare
BBR_RS20935 -1.6 -2.7 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For nutrient dropout no Tyrosine in Bifidobacterium breve UCC2003

For nutrient dropout no Tyrosine across organisms