Experiment set2IT064 for Burkholderia phytofirmans PsJN

Compare to:

LB, 23C

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14855 -5.6 -3.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS16710 -5.5 -2.1 LysR family transcriptional regulator compare
BPHYT_RS23840 -5.3 -4.2 methyltransferase compare
BPHYT_RS09515 -3.8 -6.3 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS03640 -3.4 -6.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS16255 -3.2 -7.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS08850 -3.1 -3.7 transcriptional regulator compare
BPHYT_RS12465 -3.0 -4.5 inositol monophosphatase compare
BPHYT_RS16245 -3.0 -5.7 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16270 -2.7 -6.6 phosphoglycerate kinase compare
BPHYT_RS14845 -2.6 -2.9 cysteine synthase compare
BPHYT_RS16840 -2.5 -4.1 transketolase compare
BPHYT_RS02610 -2.5 -3.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS06175 -2.4 -6.0 LPS biosynthesis compare
BPHYT_RS06405 -2.4 -8.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS06685 -2.4 -3.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS08565 -2.3 -2.2 dihydroorotate dehydrogenase compare
BPHYT_RS06530 -2.3 -2.1 membrane protein compare
BPHYT_RS03725 -2.2 -2.3 serine hydroxymethyltransferase compare
BPHYT_RS18340 -2.1 -2.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS16675 -2.1 -2.8 dihydroorotase compare
BPHYT_RS01625 -2.1 -4.2 chemotaxis protein CheY compare
BPHYT_RS04370 -2.0 -2.5 glycosyl transferase compare
BPHYT_RS14400 -1.9 -3.5 anti-sigma factor compare
BPHYT_RS12845 -1.9 -12.9 ATPase compare
BPHYT_RS17095 -1.9 -4.8 proline--tRNA ligase compare
BPHYT_RS15620 -1.8 -3.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS33920 -1.8 -8.1 type II citrate synthase compare
BPHYT_RS33840 -1.7 -5.6 amidophosphoribosyltransferase compare
BPHYT_RS06375 -1.7 -6.9 ribonuclease compare
BPHYT_RS02865 -1.7 -3.2 hypothetical protein compare
BPHYT_RS07705 -1.7 -2.7 arginine succinyltransferase compare
BPHYT_RS02860 -1.6 -1.5 membrane protein compare
BPHYT_RS02590 -1.6 -6.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS06610 -1.5 -2.6 triosephosphate isomerase compare
BPHYT_RS17520 -1.5 -4.2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS12985 -1.5 -2.5 amino acid acetyltransferase compare
BPHYT_RS33645 -1.5 -6.3 homoserine kinase compare
BPHYT_RS04290 -1.5 -2.1 glycosyl transferase family 2 compare
BPHYT_RS08960 -1.5 -1.5 threonine synthase compare
BPHYT_RS03400 -1.5 -1.4 ATP-dependent DNA helicase RecG compare
BPHYT_RS16470 -1.4 -5.5 DeoR faimly transcriptional regulator compare
BPHYT_RS14140 -1.4 -3.8 phosphate transporter permease subunit PstC compare
BPHYT_RS02005 -1.3 -2.8 diguanylate phosphodiesterase compare
BPHYT_RS12990 -1.3 -2.7 iron transporter compare
BPHYT_RS16835 -1.3 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS14865 -1.3 -3.2 UDP-glucose 6-dehydrogenase compare
BPHYT_RS06400 -1.3 -3.6 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS33580 -1.3 -4.4 geranyltranstransferase compare
BPHYT_RS27655 -1.3 -1.7 potassium transporter compare
BPHYT_RS14195 -1.2 -2.3 carbamoyl phosphate synthase small subunit compare
BPHYT_RS16290 -1.2 -1.3 hypothetical protein compare
BPHYT_RS14095 -1.2 -1.8 phosphohistidine phosphatase compare
BPHYT_RS00225 -1.2 -1.8 hypothetical protein compare
BPHYT_RS14135 -1.2 -3.5 phosphate transporter permease subunit PtsA compare
BPHYT_RS16065 -1.2 -0.8 LacI family transcriptional regulator compare
BPHYT_RS23910 -1.2 -2.0 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS18320 -1.2 -6.8 orotate phosphoribosyltransferase compare
BPHYT_RS09160 -1.1 -5.3 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS16445 -1.1 -1.9 RNA helicase compare
BPHYT_RS09480 -1.1 -1.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS14190 -1.1 -5.8 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17890 -1.1 -2.0 shikimate kinase compare
BPHYT_RS04385 -1.1 -2.7 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS12725 -1.1 -6.9 regulator compare
BPHYT_RS17035 -1.1 -2.2 sugar kinase compare
BPHYT_RS15615 -1.1 -2.3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS19785 -1.1 -2.0 chemotaxis protein CheY compare
BPHYT_RS19435 -1.1 -2.4 16S rRNA methyltransferase compare
BPHYT_RS15415 -1.1 -8.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS06350 -1.1 -2.6 chemotaxis protein CheY compare
BPHYT_RS32525 -1.1 -1.6 hypothetical protein compare
BPHYT_RS13890 -1.0 -1.9 RpiR family transcriptional regulator compare
BPHYT_RS09500 -1.0 -6.1 glucose-6-phosphate isomerase compare
BPHYT_RS05520 -1.0 -2.8 transcriptional regulator compare
BPHYT_RS26025 -1.0 -1.0 hypothetical protein compare
BPHYT_RS16905 -1.0 -3.2 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS34810 -1.0 -4.5 RND transporter compare
BPHYT_RS12055 -1.0 -8.0 phosphoenolpyruvate synthase compare
BPHYT_RS18590 -1.0 -0.9 hypothetical protein compare
BPHYT_RS11705 -1.0 -1.2 hypothetical protein compare
BPHYT_RS28930 -1.0 -1.0 chromosome partitioning protein ParA compare
BPHYT_RS14380 -1.0 -4.3 elongation factor 4 compare
BPHYT_RS14485 -1.0 -3.4 ribonuclease E compare
BPHYT_RS35530 -1.0 -2.0 arsenate reductase compare
BPHYT_RS19735 -1.0 -2.6 hypothetical protein compare
BPHYT_RS12840 -1.0 -3.2 pyruvate dehydrogenase compare
BPHYT_RS21340 -1.0 -3.2 2OG-Fe(II) oxygenase compare
BPHYT_RS18910 -1.0 -1.3 FlgN compare
BPHYT_RS06600 -1.0 -1.6 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS14145 -1.0 -6.5 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS15545 -1.0 -2.2 isoaspartyl peptidase compare
BPHYT_RS03280 -1.0 -1.4 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS14755 -1.0 -1.7 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS12265 -1.0 -1.5 alanine acetyltransferase compare
BPHYT_RS12825 -1.0 -1.9 phasin family protein compare
BPHYT_RS31890 -0.9 -1.5 transposase compare
BPHYT_RS17885 -0.9 -4.1 3-dehydroquinate synthase compare
BPHYT_RS04965 -0.9 -4.5 ATP-binding protein compare
BPHYT_RS15290 -0.9 -1.6 tRNA-Arg compare
BPHYT_RS12615 -0.9 -1.3 dihydrodipicolinate synthase compare
BPHYT_RS05615 -0.9 -1.3 hypothetical protein compare
BPHYT_RS16345 -0.9 -2.9 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS14370 -0.9 -1.5 ribonuclease III compare
BPHYT_RS16880 -0.9 -1.5 malic enzyme compare
BPHYT_RS06410 -0.9 -1.4 transcriptional regulator compare
BPHYT_RS22295 -0.9 -1.2 LysR family transcriptional regulator compare
BPHYT_RS33030 -0.9 -1.0 hypothetical protein compare
BPHYT_RS13645 -0.9 -6.8 threonine--tRNA ligase compare
BPHYT_RS32730 -0.9 -2.1 histidine phosphatase compare
BPHYT_RS26550 -0.9 -1.6 Fis family transcriptional regulator compare
BPHYT_RS35310 -0.9 -1.5 GCN5 family N-acetyltransferase compare
BPHYT_RS16175 -0.9 -1.9 hemolysin D compare
BPHYT_RS14450 -0.9 -3.9 hypothetical protein compare
BPHYT_RS26300 -0.9 -1.2 ATP-dependent DNA ligase compare
BPHYT_RS26740 -0.9 -1.3 hypothetical protein compare
BPHYT_RS20235 -0.9 -2.6 iron ABC transporter compare
BPHYT_RS32395 -0.9 -1.0 hypothetical protein compare
BPHYT_RS18255 -0.9 -2.2 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS04895 -0.9 -3.3 adenosylcobinamide kinase compare
BPHYT_RS25020 -0.9 -1.5 phospholipid-binding protein compare
BPHYT_RS23270 -0.8 -1.2 enoyl-CoA hydratase compare
BPHYT_RS03730 -0.8 -2.5 transcriptional repressor NrdR compare
BPHYT_RS26490 -0.8 -1.0 hypothetical protein compare
BPHYT_RS28470 -0.8 -1.4 hypothetical protein compare
BPHYT_RS10135 -0.8 -1.0 hypothetical protein compare
BPHYT_RS17445 -0.8 -3.3 GTP-binding protein YchF compare
BPHYT_RS17905 -0.8 -1.1 fimbrial assembly family protein compare
BPHYT_RS02595 -0.8 -1.1 sulfurtransferase compare
BPHYT_RS22360 -0.8 -1.4 response regulator receiver compare
BPHYT_RS10910 -0.8 -2.3 glucosyltransferase compare
BPHYT_RS12150 -0.8 -5.6 PII uridylyl-transferase compare
BPHYT_RS06900 -0.8 -3.9 aspartate aminotransferase compare
BPHYT_RS03170 -0.8 -2.5 membrane protein compare
BPHYT_RS05365 -0.8 -1.2 3-ketoacyl-ACP reductase compare
BPHYT_RS06075 -0.8 -2.8 hypothetical protein compare
BPHYT_RS03685 -0.8 -2.2 Tol system periplasmic component YbgF compare
BPHYT_RS04890 -0.8 -1.2 cobalamin biosynthesis protein CobD compare
BPHYT_RS11405 -0.8 -2.9 hypothetical protein compare
BPHYT_RS01630 -0.8 -1.4 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS01620 -0.8 -4.0 sensor histidine kinase compare
BPHYT_RS17530 -0.8 -3.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS02130 -0.8 -2.7 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS32675 -0.8 -1.5 2-methylcitrate dehydratase compare
BPHYT_RS03320 -0.8 -1.8 lactoylglutathione lyase compare
BPHYT_RS33615 -0.8 -1.9 decarboxylase compare
BPHYT_RS08135 -0.8 -0.9 hypothetical protein compare
BPHYT_RS01945 -0.8 -1.7 hypothetical protein compare
BPHYT_RS20025 -0.8 -1.7 crotonase compare
BPHYT_RS09465 -0.8 -1.3 transcriptional regulator compare
BPHYT_RS17920 -0.8 -1.1 protein CyaY compare
BPHYT_RS04955 -0.8 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS09445 -0.8 -2.6 trigger factor compare
BPHYT_RS19115 -0.8 -2.0 acyl carrier protein compare
BPHYT_RS10065 -0.8 -1.3 cytochrome C oxidase subunit I compare
BPHYT_RS33130 -0.8 -2.3 transcriptional regulator compare
BPHYT_RS26510 -0.8 -1.2 transcriptional regulator compare
BPHYT_RS29945 -0.8 -1.5 histidine kinase compare
BPHYT_RS04285 -0.8 -1.0 rhamnosyltransferase compare
BPHYT_RS29085 -0.7 -1.5 LysR family transcriptional regulator compare
BPHYT_RS29520 -0.7 -0.7 hypothetical protein compare
BPHYT_RS22870 -0.7 -1.2 copper transporter compare
BPHYT_RS26280 -0.7 -1.7 hypothetical protein compare
BPHYT_RS31515 -0.7 -1.6 agmatinase compare
BPHYT_RS02285 -0.7 -3.3 cell division protein compare
BPHYT_RS08060 -0.7 -2.2 ribosome maturation factor RimP compare
BPHYT_RS10270 -0.7 -2.5 D-amino acid dehydrogenase compare
BPHYT_RS02435 -0.7 -0.9 hypothetical protein compare
BPHYT_RS23475 -0.7 -1.3 luciferase compare
BPHYT_RS24430 -0.7 -3.1 type VI secretion protein ImpA compare
BPHYT_RS01505 -0.7 -1.2 7-cyano-7-deazaguanine reductase compare
BPHYT_RS01455 -0.7 -0.7 peptide deformylase compare
BPHYT_RS12535 -0.7 -0.9 membrane protein compare
BPHYT_RS26310 -0.7 -1.9 ribonuclease R compare
BPHYT_RS06310 -0.7 -3.0 heme oxygenase compare
BPHYT_RS20095 -0.7 -0.8 transcriptional regulator compare
BPHYT_RS26330 -0.7 -2.9 hypothetical protein compare
BPHYT_RS07325 -0.7 -0.8 GntR family transcriptional regulator compare
BPHYT_RS04335 -0.7 -1.4 membrane protein compare
BPHYT_RS23250 -0.7 -0.9 hypothetical protein compare
BPHYT_RS16250 -0.7 -0.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS08955 -0.7 -2.3 homoserine dehydrogenase compare
BPHYT_RS33150 -0.7 -0.7 beta-lactamase compare
BPHYT_RS33805 -0.7 -0.9 hypothetical protein compare
BPHYT_RS00150 -0.7 -1.8 DEAD/DEAH box helicase compare
BPHYT_RS11805 -0.7 -1.0 hypothetical protein compare
BPHYT_RS29100 -0.7 -1.3 ketosteroid isomerase compare
BPHYT_RS36050 -0.7 -1.9 hypothetical protein compare
BPHYT_RS29110 -0.7 -1.6 DNA-directed DNA polymerase compare
BPHYT_RS08125 -0.7 -4.8 ATPase compare
BPHYT_RS06345 -0.7 -3.7 sensor histidine kinase compare
BPHYT_RS02975 -0.7 -1.3 membrane protein compare
BPHYT_RS32860 -0.7 -0.7 hypothetical protein compare
BPHYT_RS10760 -0.7 -2.5 major facilitator transporter compare
BPHYT_RS02725 -0.7 -2.1 GntR family transcriptional regulator compare
BPHYT_RS26215 -0.7 -1.6 haloacid dehalogenase compare
BPHYT_RS34175 -0.7 -2.8 N-acylglucosamine 2-epimerase compare
BPHYT_RS04340 -0.7 -2.4 hypothetical protein compare
BPHYT_RS27295 -0.7 -0.8 hypothetical protein compare
BPHYT_RS12065 -0.7 -1.6 RNA methyltransferase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in temperature experiments