Experiment set2IT063 for Sinorhizobium meliloti 1021

Compare to:

LB, pH7

200 most important genes:

  gene name fitness t score description  
SMc02850 -4.2 -5.8 DNA polymerase I compare
SMc03849 -4.1 -2.4 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SMc02363 -4.0 -3.9 cytochrome C-type biogenesis transmembrane protein compare
SMc03763 -3.5 -4.9 cytosine-specific methyltransferase compare
SMc01147 -3.1 -6.2 coproporphyrinogen III oxidase compare
SMc03850 -2.9 -2.3 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc03229 -2.5 -2.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc02144 -2.4 -4.4 phosphate ABC transporter permease compare
SMc00302 -2.2 -4.4 hypothetical protein compare
SMc02909 -2.2 -3.0 transglycosylase transmembrane protein compare
SMa0789 -2.1 -5.0 GntR family transcriptional regulator compare
SMc00987 -2.0 -2.6 hypothetical protein compare
SMc02362 -2.0 -2.8 cytochrome c-type biogenesis protein CcmE compare
SMc02753 -2.0 -2.0 PTS system transporter subunit IIA compare
SMc00619 -2.0 -1.5 hypothetical protein compare
SMc00450 -2.0 -2.4 protoheme IX farnesyltransferase compare
SMc00295 -2.0 -1.9 hypothetical protein compare
SMc02140 -2.0 -2.8 phosphate regulon transcriptional regulatory protein compare
SMc03978 -1.9 -3.9 transketolase compare
SMc02141 -1.8 -2.8 phosphate transporter PhoU compare
SMc01183 -1.8 -2.4 LexA repressor compare
SMc02147 -1.8 -8.2 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc02143 -1.7 -4.2 phosphate ABC transporter permease compare
SM_b20758 -1.7 -3.8 ArsR family transcriptional regulator compare
SMc01850 -1.7 -2.9 hypothetical protein compare
SMc02145 -1.7 -1.2 signal peptide protein compare
SMc02102 -1.6 -5.5 hypothetical protein compare
SMc00010 -1.6 -3.2 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc01206 -1.6 -2.7 queuine tRNA-ribosyltransferase compare
SMc00914 -1.6 -5.5 oxidoreductase compare
SMc01800 -1.6 -2.0 cytochrome C oxidase assembly transmembrane protein compare
SMc02683 -1.6 -2.4 hypothetical protein compare
SMc02149 -1.5 -1.5 hypothetical protein compare
SMc00856 -1.5 -1.6 hypothetical protein compare
SMc00963 -1.5 -3.9 hypothetical protein compare
SMc01881 -1.4 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02435 -1.4 -1.8 methyltransferase compare
SM_b21580 -1.4 -2.4 hypothetical protein compare
SMc02142 -1.4 -3.5 phosphate transporter ATP-binding protein compare
SMc04296 -1.4 -1.3 cell division protein FtsZ compare
SMc00334 -1.4 -1.5 cytidylate kinase compare
SMc02856 -1.3 -8.5 penicillin-binding protein compare
SMc00815 -1.3 -1.4 inosine 5'-monophosphate dehydrogenase compare
SMc02867 -1.3 -2.9 multidrug-efflux system transmembrane protein compare
SMc03774 -1.3 -2.6 hypothetical protein compare
SMc02115 -1.3 -1.0 hypothetical protein compare
SMc02495 -1.3 -1.8 translaldolase compare
SMc00053 -1.3 -1.1 monovalent cation/H+ antiporter subunit C compare
SMc03242 -1.2 -2.6 GTP-binding protein compare
SMc03127 -1.2 -1.9 ABC transporter permease compare
SMc01215 -1.2 -3.3 carbamoyl phosphate synthase large subunit compare
SMc04085 -1.2 -3.0 hypothetical protein compare
SMc00760 -1.2 -4.0 recombinase A compare
SMc00580 -1.2 -3.7 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc00492 -1.2 -1.0 hypothetical protein compare
SMc00602 -1.2 -4.4 excinuclease ABC subunit C compare
SMc01845 -1.1 -2.2 transglycosylase transmembrane protein compare
SMc00712 -1.1 -2.0 hypothetical protein compare
SM_b20955 -1.1 -2.8 endo-beta-1,3-1,4-glycanase compare
SMc04330 -1.1 -1.6 trimethylamine methyltransferase compare
SMc01933 -1.1 -1.6 hypothetical protein compare
SMc01461 -1.1 -3.5 DNA helicase II protein compare
SMc02232 -1.1 -2.7 hypothetical protein compare
SMc02833 -1.1 -1.8 penicillin-insensitive murein endopeptidase compare
SMc00556 -1.0 -4.1 DNA repair protein RadA compare
SMc00017 -1.0 -1.4 homoserine kinase compare
SMc01187 -1.0 -1.5 rare lipoprotein A compare
SMc01207 -1.0 -2.7 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc02906 -1.0 -0.9 hypothetical protein compare
SMc00088 -0.9 -1.8 hypothetical protein compare
SMc02724 -0.9 -3.3 hypothetical protein compare
SMc03967 -0.9 -1.3 Holliday junction resolvase compare
SMc02484 -0.9 -3.4 amino acid efflux transmembrane protein compare
SM_b20258 -0.9 -3.6 transcriptional regulator compare
SMc03124 -0.9 -2.2 periplasmic binding ABC transporter protein compare
SMc01280 -0.9 -1.3 protease compare
SMc04040 -0.9 -1.7 heat shock protein compare
SMc02558 -0.9 -3.9 hypothetical protein compare
SMa0882 -0.8 -1.3 hypothetical protein compare
SMc01178 -0.8 -1.5 multidrug transmembrane resistance signal peptide protein compare
SMc01569 -0.8 -1.3 carbamoyl phosphate synthase small subunit compare
SMc00565 -0.8 -1.3 50S ribosomal protein L9 compare
SMa2215 -0.8 -2.5 GntR family transcriptional regulator compare
SMc00711 -0.8 -3.2 cyclohexadienyl dehydrogenase compare
SMc02309 -0.8 -3.6 arsenate reductase compare
SMc00928 -0.8 -1.0 signal peptide protein compare
SMc01877 -0.8 -3.3 DNA repair protein compare
SMa0112 -0.8 -2.0 hypothetical protein compare
SMc02631 -0.8 -1.4 hypothetical protein compare
SMc00982 -0.8 -3.7 dioxygenase compare
SMc02697 -0.8 -1.1 hypothetical protein compare
SMc01361 -0.8 -2.3 dihydroorotase compare
SMa1924 -0.8 -0.8 hypothetical protein compare
SM_b21479 -0.8 -1.5 hypothetical protein compare
SMc02719 -0.8 -0.8 transposase compare
SMa1413 -0.8 -1.7 hypothetical protein compare
SMc02451 -0.8 -1.3 hypothetical protein compare
SMc01235 -0.8 -5.6 excinuclease ABC subunit A compare
SMc00691 -0.8 -2.7 site-specific tyrosine recombinase XerD compare
SMc00351 -0.8 -0.9 hypothetical protein compare
SMc03128 -0.8 -2.1 ABC transporter permease compare
SMc00876 -0.7 -3.4 ATP-binding MRP protein compare
SMc00496 -0.7 -1.0 hypothetical protein compare
SMc01723 -0.7 -1.3 hypothetical protein compare
SM_b21173 -0.7 -1.3 hypothetical protein compare
SM_b20953 -0.7 -0.8 hypothetical protein compare
SMc01360 -0.7 -1.9 aspartate carbamoyltransferase catalytic subunit compare
SMc03993 -0.7 -3.8 hypothetical protein compare
SMc00147 -0.7 -2.4 hypothetical protein compare
SMc01438 -0.7 -2.8 protease precursor signal peptide protein compare
SMc02787 -0.7 -2.1 hypothetical protein compare
SMa1442 -0.7 -3.1 GntR family transcriptional regulator compare
SM_b20880 -0.7 -3.9 ATP-dependent RNA helicase compare
SMa1101 -0.7 -1.0 hypothetical protein compare
SMc01119 -0.7 -1.5 hypothetical protein compare
SMc02425 -0.7 -2.8 transcriptional regulator compare
SMc00557 -0.7 -3.9 alanine racemase compare
SMa0955 -0.7 -1.2 GntR family transcriptional regulator compare
SMc00566 -0.7 -1.8 hypothetical protein compare
SMc01606 -0.7 -4.0 permease compare
SMc01342 -0.7 -2.4 hypothetical protein compare
SMc02114 -0.7 -2.2 hypothetical protein compare
SM_b21174 -0.7 -3.0 phosphate uptake ABC transporter permease compare
SM_b20401 -0.7 -2.2 hypothetical protein compare
SMc00427 -0.7 -1.7 peptide chain release factor RF-3 protein compare
SMc01770 -0.7 -1.5 serine hydroxymethyltransferase compare
SMc02234 -0.7 -1.8 hypothetical protein compare
SM_b20897 -0.7 -1.3 hypothetical protein compare
SMc03069 -0.7 -1.2 6-phosphogluconolactonase compare
SMa0905 -0.7 -0.9 hypothetical protein compare
SMc04090 -0.7 -2.7 sun protein compare
SMc00451 -0.6 -3.4 processing protease compare
SMc02866 -0.6 -1.7 transcriptional regulator compare
SMc02698 -0.6 -2.7 adenine phosphoribosyltransferase compare
SMc02900 -0.6 -2.3 hypothetical protein compare
SMc00024 -0.6 -2.4 chromosome partition protein compare
SMc03183 -0.6 -2.3 monovalent cation/H+ antiporter subunit F compare
SMc01258 -0.6 -2.8 hypothetical protein compare
SMc03140 -0.6 -2.1 transcriptional regulator compare
SMc00404 -0.6 -0.7 hypothetical protein compare
SMc02280 -0.6 -1.2 hypothetical protein compare
SMc03801 -0.6 -1.2 thioredoxin protein compare
SM_b20987 -0.6 -1.6 siroheme synthase compare
SMc01579 -0.6 -0.8 hypothetical protein compare
SMc01457 -0.6 -4.8 transport transmembrane protein compare
SMc01716 -0.6 -3.0 sensor histidine kinase transmembrane protein compare
SMc02758 -0.6 -1.7 nucleotidyl transferase compare
SMa1742 -0.6 -2.1 Fe3+-siderophore ABC transporter permease compare
SMc03878 -0.6 -1.6 acetoacetyl-CoA reductase compare
SMa1240 -0.6 -0.7 NapF ferredoxin component of periplasmic nitrate reductase compare
SM_b21213 -0.6 -2.3 serinethreonine protein phosphatase compare
SMc00019 -0.6 -1.5 hypothetical protein compare
SMc03836 -0.6 -1.1 acyl-CoA thioesterase i protein compare
SMc03826 -0.6 -1.9 argininosuccinate synthase compare
SMc00650 -0.6 -0.9 hypothetical protein compare
SMc02713 -0.6 -1.1 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc01204 -0.6 -3.1 transmembrane oxidoreductase compare
SMc01146 -0.6 -1.5 deoxyribonucleotide triphosphate pyrophosphatase compare
SMc01568 -0.6 -0.8 hypothetical protein compare
SMc03245 -0.6 -2.3 amidase compare
SMc02050 -0.6 -2.2 trigger factor compare
SM_b20889 -0.6 -1.8 hypothetical protein compare
SMc02685 -0.6 -1.7 hypothetical protein compare
SMa2253 -0.6 -0.7 hypothetical protein compare
SMc00189 -0.6 -1.5 cytochrome C1 protein compare
SMc04385 -0.6 -2.5 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc02602 -0.6 -2.2 hypothetical protein compare
SMc00576 -0.6 -1.7 hypothetical protein compare
SMc02485 -0.6 -1.0 signal peptide protein compare
SM_b20484 -0.6 -2.9 sugar ABC transporter substrate-binding protein compare
SMc02897 -0.6 -1.3 cytochrome C transmembrane protein compare
SMa0106 -0.6 -1.9 ABC transporter permease compare
SMa5015 -0.6 -1.6 hypothetical protein compare
SMc02861 -0.6 -1.5 phosphate transporter compare
SMa0659 -0.6 -1.3 cytochrome c binding protein, carboxyl terminus compare
SMc02980 -0.6 -0.9 hypothetical protein compare
SMc01826 -0.6 -1.4 ABC transporter permease compare
SM_b20146 -0.6 -2.5 pyridoxal phosphate biosynthetic protein compare
SM_b21330 -0.6 -2.4 hypothetical protein compare
SMc01984 -0.6 -1.4 cytochrome-C oxidase transmembrane protein compare
SM_b20773 -0.6 -1.6 GntR family transcriptional regulator compare
SMc00104 -0.6 -1.4 hypothetical protein compare
SMa5025 -0.6 -1.6 hypothetical protein compare
SMc01578 -0.6 -4.0 aspartate aminotransferase compare
SMc00970 -0.6 -1.4 exodeoxyribonuclease VII small subunit compare
SM_b20655 -0.6 -1.5 hypothetical protein compare
SMc02077 -0.6 -1.3 exodeoxyribonuclease III protein compare
SM_b20307 -0.6 -0.6 dihydroxyacetone kinase compare
SMc03091 -0.6 -1.7 arginase compare
SMc02591 -0.6 -1.5 hypothetical protein compare
SMc04231 -0.5 -3.3 excinuclease ABC subunit B compare
SMc02231 -0.5 -1.6 hypothetical protein compare
SMa1643 -0.5 -1.1 hypothetical protein compare
SM_b20452 -0.5 -1.5 hypothetical protein compare
SMc01368 -0.5 -2.4 transport transmembrane protein compare
SM_b20822 -0.5 -2.1 cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833 compare
SM_b20117 -0.5 -1.0 sugar transferase compare
SMc01214 -0.5 -1.7 zinc-containing alcohol dehydrogenase compare
SMc00656 -0.5 -0.9 hypothetical protein compare
SMc01607 -0.5 -3.1 permease compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in pH experiments