Experiment set2IT063 for Herbaspirillum seropedicae SmR1

Compare to:

L-Proline nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS10180 +2.6 4.0 flagellar biosynthesis protein FlgB compare
HSERO_RS10255 +2.2 5.7 flagellar biosynthesis protein FliQ compare
HSERO_RS10200 +2.1 10.2 flagellar basal body rod protein FlgF compare
HSERO_RS10315 +2.0 9.5 flagellar hook-basal body protein FliE compare
HSERO_RS10175 +2.0 8.0 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS10195 +1.9 10.4 flagellar hook protein FlgE compare
HSERO_RS10205 +1.9 5.0 flagellar basal body rod protein FlgG compare
HSERO_RS10290 +1.9 12.7 flagellar biosynthesis protein FliJ compare
HSERO_RS20820 +1.9 2.5 ABC transporter ATP-binding protein compare
HSERO_RS10185 +1.8 9.7 flagellar basal body rod protein FlgC compare
HSERO_RS10260 +1.8 10.1 flagellar biosynthesis protein FliP compare
HSERO_RS13890 +1.8 7.7 LuxR family transcriptional regulator compare
HSERO_RS13885 +1.8 12.6 histidine kinase compare
HSERO_RS10265 +1.8 9.2 flagellar biosynthesis protein FliO compare
HSERO_RS10215 +1.8 7.4 flagellar P-ring protein FlgI compare
HSERO_RS10305 +1.7 11.0 flagellar motor switch protein FliG compare
HSERO_RS10310 +1.7 10.8 flagellar M-ring protein FliF compare
HSERO_RS10285 +1.7 8.4 flagellar hook-length control protein compare
HSERO_RS10295 +1.7 8.5 ATP synthase compare
HSERO_RS10275 +1.6 8.6 flagellar motor switch protein FliM compare
HSERO_RS10250 +1.6 9.0 flagellar biosynthesis protein FliR compare
HSERO_RS14985 +1.6 11.4 transcriptional regulator compare
HSERO_RS10145 +1.6 13.2 flagellar biosynthesis protein FlhA compare
HSERO_RS16825 +1.4 2.8 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS22350 +1.4 1.8 urea carboxylase compare
HSERO_RS12865 +1.3 4.3 spore coat protein compare
HSERO_RS18600 +1.3 2.6 transcriptional regulator compare
HSERO_RS10140 +1.2 6.0 flagellar biosynthesis protein FlhB compare
HSERO_RS19750 +1.2 2.8 hypothetical protein compare
HSERO_RS08535 +1.2 4.5 glycine/betaine ABC transporter substrate-binding protein compare
HSERO_RS17160 +1.2 2.0 hypothetical protein compare
HSERO_RS06745 +1.2 1.7 hypothetical protein compare
HSERO_RS10765 +1.2 2.8 hypothetical protein compare
HSERO_RS10190 +1.1 4.5 flagellar basal body rod modification protein FlgD compare
HSERO_RS10150 +1.1 7.1 flagellar biosynthesis regulator FlhF compare
HSERO_RS05620 +1.1 1.4 dehydratase compare
HSERO_RS20825 +1.1 2.9 ABC transporter permease compare
HSERO_RS21525 +1.0 3.1 alpha/beta hydrolase compare
HSERO_RS22420 +1.0 3.7 azoreductase compare
HSERO_RS16490 +1.0 7.9 FimV compare
HSERO_RS12625 +1.0 1.7 sulfonate ABC transporter ATP-binding lipoprotein compare
HSERO_RS09360 +1.0 2.3 lysine transporter LysE compare
HSERO_RS10280 +1.0 1.3 flagellar basal body protein FliL compare
HSERO_RS22515 +1.0 2.0 haloacid dehalogenase compare
HSERO_RS15240 +1.0 1.8 XRE family transcriptional regulator compare
HSERO_RS14970 +1.0 4.2 flagellar motor protein MotB compare
HSERO_RS05150 +1.0 5.0 galactonate dehydratase compare
HSERO_RS11990 +1.0 2.4 periplasmic or secreted lipoprotein compare
HSERO_RS21745 +0.9 2.0 5'-methylthioadenosine nucleosidase compare
HSERO_RS19455 +0.9 1.2 3-ketoacyl-ACP reductase compare
HSERO_RS06960 +0.9 2.5 chemotaxis protein CheY compare
HSERO_RS16365 +0.9 3.1 hypothetical protein compare
HSERO_RS14975 +0.9 3.2 flagellar motor protein MotA compare
HSERO_RS14695 +0.9 3.3 ABC transporter permease compare
HSERO_RS13480 +0.9 1.4 C4-dicarboxylate ABC transporter compare
HSERO_RS00160 +0.9 2.8 hypothetical protein compare
HSERO_RS05855 +0.8 2.3 flagellar motor protein MotA compare
HSERO_RS01425 +0.8 1.8 DNA-binding protein compare
HSERO_RS21195 +0.8 5.2 hypothetical protein compare
HSERO_RS16070 +0.8 3.0 cytochrome biogenesis protein compare
HSERO_RS08735 +0.8 3.5 hypothetical protein compare
HSERO_RS14620 +0.8 2.6 chemotaxis protein compare
HSERO_RS10125 +0.8 3.1 chemotaxis protein compare
HSERO_RS08530 +0.8 2.2 glycine/betaine ABC transporter permease compare
HSERO_RS09745 +0.8 1.7 chemotaxis protein CheY compare
HSERO_RS02140 +0.8 0.9 thiamine-phosphate synthase compare
HSERO_RS02560 +0.8 1.0 hypothetical protein compare
HSERO_RS08225 +0.8 1.4 alpha/beta hydrolase compare
HSERO_RS21225 +0.8 5.2 hypothetical protein compare
HSERO_RS21405 +0.8 2.4 glutathione S-transferase compare
HSERO_RS09750 +0.8 3.7 8-amino-7-oxononanoate synthase compare
HSERO_RS21210 +0.8 4.0 membrane protein compare
HSERO_RS06570 +0.8 1.6 endoribonuclease L-PSP compare
HSERO_RS21655 +0.8 3.4 elongation factor G compare
HSERO_RS10160 +0.8 4.3 flagellar biosynthesis sigma factor compare
HSERO_RS02065 +0.8 1.3 hypothetical protein compare
HSERO_RS10065 +0.8 1.4 hypothetical protein compare
HSERO_RS23830 +0.8 3.0 transcriptional regulator compare
HSERO_RS01915 +0.7 3.4 membrane protein compare
HSERO_RS09205 +0.7 1.9 glutathione ABC transporter permease compare
HSERO_RS18015 +0.7 1.6 transcriptional regulator compare
HSERO_RS12850 +0.7 1.7 LuxR family transcriptional regulator compare
HSERO_RS07260 +0.7 1.2 diguanylate cyclase compare
HSERO_RS08305 +0.7 2.4 hypothetical protein compare
HSERO_RS14025 +0.7 1.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS10650 +0.7 1.9 hypothetical protein compare
HSERO_RS09160 +0.7 1.8 amidase compare
HSERO_RS17080 +0.7 1.7 hypothetical protein compare
HSERO_RS21220 +0.7 5.7 hypothetical protein compare
HSERO_RS05890 +0.7 1.2 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS22525 +0.7 0.9 glyoxalase compare
HSERO_RS01365 +0.7 1.0 TetR family transcriptional regulator compare
HSERO_RS08205 +0.7 1.8 sulfonate ABC transporter compare
HSERO_RS08725 +0.7 1.6 transcriptional regulator compare
HSERO_RS18045 +0.7 1.0 hypothetical protein compare
HSERO_RS17820 +0.7 2.5 Lipid A core--O-antigen ligase compare
HSERO_RS09115 +0.7 2.6 hypothetical protein compare
HSERO_RS11405 +0.7 2.9 transcriptional regulator compare
HSERO_RS21205 +0.7 3.2 hypothetical protein compare
HSERO_RS08775 +0.7 2.4 membrane protein compare
HSERO_RS09215 +0.7 1.4 D-aminopeptidase compare
HSERO_RS12690 +0.7 0.8 transcriptional regulator compare
HSERO_RS16800 +0.7 2.2 hypothetical protein compare
HSERO_RS08930 +0.7 2.1 alpha/beta hydrolase compare
HSERO_RS06970 +0.7 2.1 cytochrome C553 compare
HSERO_RS13940 +0.7 2.2 acetylornithine deacetylase compare
HSERO_RS21215 +0.7 1.5 hypothetical protein compare
HSERO_RS05310 +0.7 2.0 AraC family transcriptional regulator compare
HSERO_RS23655 +0.7 1.4 phosphonate ABC transporter permease compare
HSERO_RS12420 +0.6 1.6 transcriptional regulator compare
HSERO_RS21615 +0.6 1.5 ABC transporter substrate-binding protein compare
HSERO_RS23270 +0.6 1.8 ABC transporter compare
HSERO_RS21795 +0.6 0.6 CoA-binding protein compare
HSERO_RS22215 +0.6 2.6 branched-chain amino acid ABC transporter permease compare
HSERO_RS16105 +0.6 1.2 histidine kinase compare
HSERO_RS19140 +0.6 1.4 Rieske (2Fe-2S) protein compare
HSERO_RS07460 +0.6 2.1 hypothetical protein compare
HSERO_RS10210 +0.6 1.3 flagellar L-ring protein FlgH compare
HSERO_RS04845 +0.6 1.7 ABC transporter compare
HSERO_RS02690 +0.6 2.8 taurine ABC transporter permease compare
HSERO_RS23660 +0.6 1.2 phosphonate ABC transporter ATP-binding protein compare
HSERO_RS16940 +0.6 1.6 hypothetical protein compare
HSERO_RS08270 +0.6 2.2 amino acid ABC transporter substrate-binding protein compare
HSERO_RS14170 +0.6 2.1 thioredoxin compare
HSERO_RS15915 +0.6 2.5 hypothetical protein compare
HSERO_RS22010 +0.6 2.2 toxin RelE compare
HSERO_RS11835 +0.6 1.7 hypothetical protein compare
HSERO_RS16275 +0.6 0.9 5-hydroxyisourate hydrolase compare
HSERO_RS13895 +0.6 2.6 diguanylate cyclase compare
HSERO_RS22935 +0.6 1.7 metallothio multi-domain protein compare
HSERO_RS10620 +0.6 1.0 membrane protein compare
HSERO_RS13475 +0.6 1.9 C4-dicarboxylate ABC transporter compare
HSERO_RS01140 +0.6 0.7 phage tail protein compare
HSERO_RS08950 +0.6 2.6 spermidine synthase compare
HSERO_RS06935 +0.6 1.1 RNA-binding protein compare
HSERO_RS02915 +0.6 2.0 short-chain dehydrogenase compare
HSERO_RS10030 +0.6 0.9 acyltransferase compare
HSERO_RS19150 +0.6 2.0 3-mercaptopyruvate sulfurtransferase compare
HSERO_RS21735 +0.6 1.2 hypothetical protein compare
HSERO_RS16030 +0.6 2.0 cytochrome oxidase assembly protein compare
HSERO_RS11345 +0.6 0.7 hypothetical protein compare
HSERO_RS23545 +0.6 2.4 sodium transporter compare
HSERO_RS08485 +0.6 1.5 hypothetical protein compare
HSERO_RS23180 +0.6 2.8 membrane protein compare
HSERO_RS22070 +0.6 3.1 CDP-4-keto-6-deoxy-D-glucose-3-dehydrase compare
HSERO_RS12350 +0.6 1.4 histidine kinase compare
HSERO_RS01920 +0.6 2.5 50S ribosomal protein L11 methyltransferase compare
HSERO_RS23525 +0.6 1.7 hypothetical protein compare
HSERO_RS18775 +0.6 1.9 phage killer protein compare
HSERO_RS20675 +0.6 2.9 diguanylate cyclase compare
HSERO_RS17615 +0.6 2.4 glycosyl hydrolase compare
HSERO_RS14510 +0.6 1.5 AraC family transcriptional regulator compare
HSERO_RS12335 +0.6 2.9 voltage-gated chloride channel protein compare
HSERO_RS20065 +0.5 1.6 hypothetical protein compare
HSERO_RS18090 +0.5 0.9 II family cellulose-binding protein compare
HSERO_RS12735 +0.5 0.5 GNAT family acetyltransferase compare
HSERO_RS14475 +0.5 1.2 iron ABC transporter ATP-binding protein compare
HSERO_RS12280 +0.5 1.9 ABC transporter permease compare
HSERO_RS04385 +0.5 2.3 replication protein compare
HSERO_RS12015 +0.5 0.7 molecular chaperone DnaK compare
HSERO_RS16640 +0.5 1.9 ABC transporter substrate-binding protein compare
HSERO_RS04155 +0.5 0.8 hypothetical protein compare
HSERO_RS19225 +0.5 1.8 peroxiredoxin compare
HSERO_RS23835 +0.5 1.7 transporter compare
HSERO_RS14160 +0.5 2.4 hypothetical protein compare
HSERO_RS14320 +0.5 1.0 FmdB family transcriptional regulator compare
HSERO_RS08275 +0.5 3.2 branched-chain amino acid transporter permease subunit LivH compare
HSERO_RS18915 +0.5 1.1 AraC family transcriptional regulator compare
HSERO_RS06640 +0.5 1.4 N-carbamoylsarcosine amidase compare
HSERO_RS22165 +0.5 2.5 cytochrome C peroxidase compare
HSERO_RS19915 +0.5 1.4 IclR family transcriptional regulator compare
HSERO_RS06565 +0.5 1.2 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
HSERO_RS04945 +0.5 1.1 murein transglycosylase compare
HSERO_RS12575 +0.5 1.6 ethanolamine ammonia-lyase small subunit compare
HSERO_RS14000 +0.5 1.1 hypothetical protein compare
HSERO_RS02760 +0.5 0.9 hypothetical protein compare
HSERO_RS02625 +0.5 1.7 hypothetical protein compare
HSERO_RS19465 +0.5 2.3 major facilitator transporter compare
HSERO_RS20080 +0.5 1.1 hypothetical protein compare
HSERO_RS03780 +0.5 1.3 type VI secretion protein compare
HSERO_RS19980 +0.5 1.6 ABC transporter permease compare
HSERO_RS11880 +0.5 0.8 hypothetical protein compare
HSERO_RS16700 +0.5 1.2 ABC transporter substrate-binding protein compare
HSERO_RS04875 +0.5 2.2 glycerol kinase compare
HSERO_RS20925 +0.5 2.6 deoxyguanosinetriphosphate triphosphohydrolase compare
HSERO_RS06550 +0.5 1.8 benzoate 1,2-dioxygenase subunit alpha compare
HSERO_RS07710 +0.5 0.8 hypothetical protein compare
HSERO_RS01375 +0.5 1.6 hypothetical protein compare
HSERO_RS18230 +0.5 1.1 pilus assembly protein compare
HSERO_RS03865 +0.5 1.4 hypothetical protein compare
HSERO_RS02025 +0.5 2.0 D-tyrosyl-tRNA(Tyr) deacylase compare
HSERO_RS03985 +0.5 2.2 type III secretion protein compare
HSERO_RS21080 +0.5 2.1 glycosyl transferase compare
HSERO_RS05185 +0.5 2.2 ABC transporter permease compare
HSERO_RS05245 +0.5 1.9 hypothetical protein compare
HSERO_RS11860 +0.5 1.9 hypothetical protein compare
HSERO_RS08770 +0.5 1.4 membrane protein compare
HSERO_RS23885 +0.5 2.3 XRE family transcriptional regulator compare
HSERO_RS13700 +0.5 0.8 Fis family transcriptional regulator compare
HSERO_RS16615 +0.5 1.2 LysR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Proline in Herbaspirillum seropedicae SmR1

For nitrogen source L-Proline across organisms