Experiment set2IT063 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium D-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -7.0 -4.8 5,10-methylenetetrahydrofolate reductase compare
RR42_RS16265 -6.6 -5.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS06485 -6.5 -4.5 chorismate synthase compare
RR42_RS14400 -6.3 -4.3 isopropylmalate isomerase compare
RR42_RS30655 -6.3 -4.3 LysR family transcriptional regulator compare
RR42_RS33255 -6.0 -3.8 protein-tyrosine phosphatase compare
RR42_RS11795 -5.6 -3.6 PEP synthetase regulatory protein compare
RR42_RS19005 -5.4 -6.4 3-dehydroquinate synthase compare
RR42_RS14385 -5.4 -6.4 3-isopropylmalate dehydrogenase compare
RR42_RS04475 -5.2 -10.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16250 -5.2 -8.6 sulfate adenylyltransferase compare
RR42_RS18300 -5.1 -6.5 anthranilate synthase subunit II compare
RR42_RS18295 -5.0 -11.7 anthranilate synthase component I compare
RR42_RS16255 -5.0 -9.4 sulfate adenylyltransferase compare
RR42_RS16245 -5.0 -5.9 uroporphyrin-III methyltransferase compare
RR42_RS33240 -5.0 -15.6 GDP-L-fucose synthase compare
RR42_RS04535 -4.5 -6.2 cysteine synthase compare
RR42_RS15905 -4.5 -13.1 phosphoenolpyruvate carboxylase compare
RR42_RS14390 -4.5 -5.5 3-isopropylmalate dehydratase compare
RR42_RS30660 -4.4 -8.6 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS16270 -4.4 -11.2 sulfite reductase compare
RR42_RS33250 -4.4 -7.8 tyrosine protein kinase compare
RR42_RS17645 -4.3 -7.4 shikimate dehydrogenase compare
RR42_RS12040 -4.3 -14.0 MFS transporter compare
RR42_RS01160 -4.3 -9.6 homoserine O-acetyltransferase compare
RR42_RS18305 -4.2 -4.7 anthranilate phosphoribosyltransferase compare
RR42_RS16275 -4.2 -5.0 membrane protein compare
RR42_RS19010 -4.2 -7.9 shikimate kinase compare
RR42_RS14365 -4.2 -2.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS33260 -4.2 -9.9 multidrug MFS transporter compare
RR42_RS18990 -4.0 -19.6 glutamate synthase compare
RR42_RS33245 -3.9 -10.4 mannose-1-phosphate guanyltransferase compare
RR42_RS33355 -3.9 -7.3 membrane protein compare
RR42_RS33210 -3.7 -5.3 teichoic acid biosynthesis protein compare
RR42_RS33235 -3.5 -8.7 GDP-mannose 4,6-dehydratase compare
RR42_RS05990 -3.4 -10.0 aromatic amino acid aminotransferase compare
RR42_RS07555 -3.4 -4.0 potassium transporter Kup compare
RR42_RS18985 -3.4 -6.6 glutamate synthase compare
RR42_RS01720 -3.4 -3.5 membrane protein compare
RR42_RS16280 -3.4 -4.9 transcriptional regulator compare
RR42_RS18850 -3.4 -3.3 preprotein translocase subunit TatC compare
RR42_RS01290 -3.4 -8.8 thiamine biosynthesis protein ThiC compare
RR42_RS01845 -3.3 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS05860 -3.3 -3.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14320 -3.1 -7.0 O-succinylhomoserine sulfhydrylase compare
RR42_RS11790 -3.1 -7.3 phosphoenolpyruvate synthase compare
RR42_RS14360 -3.1 -1.7 tryptophan synthase subunit alpha compare
RR42_RS07605 -3.0 -6.9 poly-beta-hydroxybutyrate polymerase compare
RR42_RS04460 -2.9 -5.0 chorismate mutase compare
RR42_RS02705 -2.8 -3.1 Holliday junction DNA helicase RuvA compare
RR42_RS15890 -2.8 -10.2 heme biosynthesis protein HemY compare
RR42_RS18820 -2.8 -8.6 cytochrome B compare
RR42_RS12550 -2.6 -5.3 hypothetical protein compare
RR42_RS18855 -2.6 -3.6 preprotein translocase compare
RR42_RS07365 -2.5 -4.0 pyruvate dehydrogenase compare
RR42_RS18930 -2.5 -6.3 BolA family transcriptional regulator compare
RR42_RS01920 -2.5 -4.5 protoheme IX farnesyltransferase compare
RR42_RS26935 -2.4 -6.5 farnesyl-diphosphate farnesyltransferase compare
RR42_RS15410 -2.4 -4.7 membrane protein compare
RR42_RS19090 -2.4 -2.4 cytochrome C compare
RR42_RS18815 -2.3 -4.8 cytochrome C compare
RR42_RS21220 -2.3 -3.1 iron transporter FeoB compare
RR42_RS17310 -2.3 -3.7 D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) (from data) compare
RR42_RS15415 -2.2 -4.0 membrane protein compare
RR42_RS17300 -2.2 -8.0 D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) (from data) conserved
RR42_RS06095 -2.1 -4.8 hypothetical protein compare
RR42_RS24605 -2.0 -8.2 TetR family transcriptional regulator compare
RR42_RS03080 -2.0 -4.0 recombinase RecA compare
RR42_RS16260 -2.0 -1.2 phosphoadenosine phosphosulfate reductase compare
RR42_RS15895 -2.0 -6.2 uroporphyrinogen III methyltransferase compare
RR42_RS29865 -2.0 -2.9 hypothetical protein compare
RR42_RS12015 -1.9 -2.8 dihydrolipoamide acyltransferase compare
RR42_RS02500 -1.9 -2.2 TetR family transcriptional regulator compare
RR42_RS01875 -1.9 -4.2 cytochrome C oxidase subunit II compare
RR42_RS12925 -1.9 -1.9 ATPase compare
RR42_RS17105 -1.8 -9.8 Clp protease ClpX compare
RR42_RS06020 -1.8 -1.3 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS15120 -1.8 -1.9 4-oxalocrotonate tautomerase compare
RR42_RS17290 -1.8 -4.4 LysR family transcriptional regulator compare
RR42_RS07360 -1.7 -3.8 ATPase compare
RR42_RS14790 -1.7 -8.5 cobalamin biosynthesis protein CobD compare
RR42_RS16240 -1.7 -1.7 cobalamin biosynthesis protein CbiX compare
RR42_RS08085 -1.7 -3.9 hypothetical protein compare
RR42_RS04470 -1.7 -4.1 prephenate dehydrogenase compare
RR42_RS15865 -1.7 -2.6 uracil phosphoribosyltransferase compare
RR42_RS33650 -1.7 -4.0 IclR family transcriptional regulator compare
RR42_RS33215 -1.7 -7.6 transferase compare
RR42_RS17315 -1.6 -4.9 D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) (from data) compare
RR42_RS26900 -1.6 -3.2 enoyl-CoA hydratase compare
RR42_RS11770 -1.6 -2.5 cyclase compare
RR42_RS03095 -1.6 -2.1 succinyl-CoA synthetase subunit beta compare
RR42_RS18825 -1.6 -1.2 ubiquinol-cytochrome C reductase compare
RR42_RS13800 -1.6 -4.5 formyltetrahydrofolate deformylase compare
RR42_RS03075 -1.6 -7.6 transcriptional regulator compare
RR42_RS01915 -1.5 -4.5 cytochrome C oxidase subunit I compare
RR42_RS08945 -1.5 -1.7 hypothetical protein compare
RR42_RS18310 -1.5 -1.2 indole-3-glycerol-phosphate synthase compare
RR42_RS01895 -1.5 -4.9 MFS transporter compare
RR42_RS35875 -1.4 -8.3 UDP-galactose-4-epimerase compare
RR42_RS15465 -1.4 -3.5 TonB-dependent receptor compare
RR42_RS35450 -1.4 -2.4 hypothetical protein compare
RR42_RS01910 -1.4 -4.8 cytochrome C oxidase subunit I compare
RR42_RS17390 -1.4 -5.9 ATP-dependent DNA helicase RecG compare
RR42_RS19085 -1.4 -1.7 cytochrome C biogenesis protein ResB compare
RR42_RS13910 -1.4 -4.7 glutamate racemase compare
RR42_RS21435 -1.4 -3.7 hypothetical protein compare
RR42_RS03070 -1.4 -8.6 histidine kinase conserved
RR42_RS17060 -1.4 -9.8 histidine kinase compare
RR42_RS07565 -1.4 -6.7 transcription accessory protein compare
RR42_RS25785 -1.3 -1.5 TetR family transcriptional regulator compare
RR42_RS15035 -1.3 -3.6 ZIP zinc transporter compare
RR42_RS33815 -1.3 -1.1 isochorismatase compare
RR42_RS17050 -1.3 -5.6 phosphoribosylglycinamide formyltransferase compare
RR42_RS17685 -1.3 -6.3 alkyl hydroperoxide reductase compare
RR42_RS16335 -1.3 -1.6 hypothetical protein compare
RR42_RS03060 -1.3 -7.6 MFS transporter conserved
RR42_RS01885 -1.3 -4.8 cytochrome C oxidase assembly protein compare
RR42_RS26200 -1.3 -2.1 hypothetical protein compare
RR42_RS19635 -1.3 -2.0 hypothetical protein compare
RR42_RS20205 -1.3 -2.1 chromosome partitioning protein compare
RR42_RS05500 -1.3 -1.4 preprotein translocase subunit SecG compare
RR42_RS01880 -1.3 -5.0 cytochrome oxidase subunit I compare
RR42_RS01905 -1.3 -2.4 cytochrome C oxidase subunit II compare
RR42_RS21000 -1.2 -2.2 glycosyl transferase compare
RR42_RS19685 -1.2 -2.3 thiosulfate oxidation carrier complex protein SoxZ compare
RR42_RS02045 -1.2 -7.8 GTPase compare
RR42_RS02250 -1.2 -2.6 GntR family transcriptional regulator compare
RR42_RS31790 -1.2 -1.7 nitrite reductase compare
RR42_RS02205 -1.2 -1.6 succinate dehydrogenase compare
RR42_RS17055 -1.2 -5.4 LuxR family transcriptional regulator compare
RR42_RS05955 -1.2 -1.3 hypothetical protein compare
RR42_RS04895 -1.2 -6.4 serine/threonine protein phosphatase compare
RR42_RS17930 -1.2 -3.9 RNA pyrophosphohydrolase compare
RR42_RS01260 -1.2 -6.4 lauroyl acyltransferase compare
RR42_RS05420 -1.2 -5.5 membrane protein compare
RR42_RS04700 -1.2 -1.6 ribonuclease G compare
RR42_RS31530 -1.2 -2.8 histidine kinase compare
RR42_RS36105 -1.2 -2.9 MarR family transcriptional regulator compare
RR42_RS07380 -1.2 -2.9 dihydrolipoamide dehydrogenase compare
RR42_RS15775 -1.2 -6.0 N-acetylneuraminate synthase compare
RR42_RS25200 -1.2 -2.8 TetR family transcriptional regulator compare
RR42_RS00715 -1.2 -2.9 ferritin compare
RR42_RS21095 -1.2 -3.9 GntR family transcriptional regulator compare
RR42_RS14055 -1.1 -2.8 elongation factor 4 compare
RR42_RS29785 -1.1 -3.1 hypothetical protein compare
RR42_RS15845 -1.1 -2.3 biotin transporter BioY compare
RR42_RS12305 -1.1 -1.2 hypothetical protein compare
RR42_RS37240 -1.1 -1.1 hypothetical protein compare
RR42_RS12050 -1.1 -5.1 DNA polymerase compare
RR42_RS14845 -1.1 -2.4 MarR family transcriptional regulator compare
RR42_RS19445 -1.1 -3.8 TetR family transcriptional regulator compare
RR42_RS33575 -1.1 -1.5 hypothetical protein compare
RR42_RS36660 -1.1 -3.2 GntR family transcriptional regulator compare
RR42_RS21665 -1.1 -5.0 cobalt transporter compare
RR42_RS31285 -1.1 -1.7 XRE family transcriptional regulator compare
RR42_RS10590 -1.1 -1.4 hypothetical protein compare
RR42_RS18315 -1.0 -3.0 toxin compare
RR42_RS30640 -1.0 -4.4 DNA mismatch repair protein MutT compare
RR42_RS21955 -1.0 -1.5 hypothetical protein compare
RR42_RS04135 -1.0 -1.4 pilus assembly protein CpaB compare
RR42_RS01380 -1.0 -1.0 membrane protein compare
RR42_RS17730 -1.0 -1.5 hypothetical protein compare
RR42_RS02030 -1.0 -2.2 membrane protein compare
RR42_RS13040 -1.0 -4.3 iron transporter compare
RR42_RS26350 -1.0 -1.7 bleomycin resistance protein compare
RR42_RS22495 -1.0 -1.9 hypothetical protein compare
RR42_RS06890 -1.0 -1.1 hypothetical protein compare
RR42_RS17720 -1.0 -1.9 sugar kinase compare
RR42_RS15755 -1.0 -2.0 acetyltransferase compare
RR42_RS10465 -1.0 -1.5 hypothetical protein compare
RR42_RS18140 -1.0 -1.5 MarR family transcriptional regulator compare
RR42_RS21150 -1.0 -1.6 hypothetical protein compare
RR42_RS17735 -1.0 -3.9 hypothetical protein compare
RR42_RS18700 -0.9 -1.9 membrane protein compare
RR42_RS15745 -0.9 -5.0 group1 glycosyl transferase compare
RR42_RS34650 -0.9 -4.0 LacI family transcriptional regulator compare
RR42_RS05415 -0.9 -3.5 membrane protein compare
RR42_RS07620 -0.9 -3.3 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS17560 -0.9 -3.3 Fur family transcriptional regulator compare
RR42_RS01095 -0.9 -1.5 membrane protein compare
RR42_RS19825 -0.9 -2.0 LysR family transcriptional regulator compare
RR42_RS15420 -0.9 -3.2 hypothetical protein compare
RR42_RS15090 -0.9 -2.9 DNA helicase compare
RR42_RS01820 -0.9 -4.0 peptidase S41 compare
RR42_RS14045 -0.9 -1.7 membrane protein compare
RR42_RS08590 -0.9 -1.1 baseplate assembly protein compare
RR42_RS27915 -0.9 -1.4 acyl-CoA synthetase compare
RR42_RS17305 -0.9 -3.6 ion transporter compare
RR42_RS19410 -0.9 -3.7 GntR family transcriptional regulator compare
RR42_RS02775 -0.9 -1.2 molecular chaperone SurA compare
RR42_RS06875 -0.9 -0.8 hypothetical protein compare
RR42_RS30410 -0.9 -1.6 hypothetical protein compare
RR42_RS11120 -0.8 -1.9 DNA-binding protein compare
RR42_RS32235 -0.8 -3.6 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS00615 -0.8 -3.8 recombinase XerC compare
RR42_RS28850 -0.8 -2.2 transcriptional regulator compare
RR42_RS21595 -0.8 -2.3 IclR family transcriptional regulator compare
RR42_RS00250 -0.8 -3.2 GntR family transcriptional regulator compare
RR42_RS19485 -0.8 -0.8 general secretion pathway protein GspH compare
RR42_RS13620 -0.8 -0.8 ferredoxin compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium D-Lactate in Cupriavidus basilensis FW507-4G11

For carbon source Sodium D-Lactate across organisms