Experiment set2IT063 for Burkholderia phytofirmans PsJN

Compare to:

LB, pH7

200 most important genes:

  gene name fitness t score description  
BPHYT_RS23840 -4.2 -4.9 methyltransferase compare
BPHYT_RS03640 -3.6 -6.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS09515 -3.2 -7.4 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16255 -2.9 -7.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16245 -2.8 -6.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS14855 -2.7 -2.9 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS15620 -2.6 -5.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS12465 -2.5 -5.9 inositol monophosphatase compare
BPHYT_RS16710 -2.4 -2.4 LysR family transcriptional regulator compare
BPHYT_RS03725 -2.2 -2.4 serine hydroxymethyltransferase compare
BPHYT_RS16270 -1.9 -3.9 phosphoglycerate kinase compare
BPHYT_RS16840 -1.9 -4.2 transketolase compare
BPHYT_RS02865 -1.9 -4.0 hypothetical protein compare
BPHYT_RS16675 -1.9 -3.2 dihydroorotase compare
BPHYT_RS08960 -1.9 -1.9 threonine synthase compare
BPHYT_RS06610 -1.9 -3.0 triosephosphate isomerase compare
BPHYT_RS06405 -1.9 -7.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS33920 -1.8 -8.5 type II citrate synthase compare
BPHYT_RS14865 -1.7 -2.4 UDP-glucose 6-dehydrogenase compare
BPHYT_RS15710 -1.7 -2.2 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS17520 -1.7 -5.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS04285 -1.7 -1.9 rhamnosyltransferase compare
BPHYT_RS17095 -1.7 -4.5 proline--tRNA ligase compare
BPHYT_RS04290 -1.6 -3.0 glycosyl transferase family 2 compare
BPHYT_RS16175 -1.6 -3.2 hemolysin D compare
BPHYT_RS08565 -1.6 -1.7 dihydroorotate dehydrogenase compare
BPHYT_RS02860 -1.5 -1.6 membrane protein compare
BPHYT_RS18340 -1.5 -1.7 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS08850 -1.4 -3.1 transcriptional regulator compare
BPHYT_RS02610 -1.4 -3.4 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS33580 -1.4 -4.6 geranyltranstransferase compare
BPHYT_RS12845 -1.4 -11.0 ATPase compare
BPHYT_RS18590 -1.4 -1.2 hypothetical protein compare
BPHYT_RS33840 -1.4 -6.0 amidophosphoribosyltransferase compare
BPHYT_RS06685 -1.4 -2.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS06175 -1.3 -6.5 LPS biosynthesis compare
BPHYT_RS34815 -1.3 -2.1 ABC transporter compare
BPHYT_RS02595 -1.3 -0.9 sulfurtransferase compare
BPHYT_RS14845 -1.3 -3.5 cysteine synthase compare
BPHYT_RS24500 -1.3 -2.2 histidine kinase compare
BPHYT_RS02590 -1.3 -6.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS06190 -1.3 -4.5 heptosyltransferase compare
BPHYT_RS17920 -1.3 -1.7 protein CyaY compare
BPHYT_RS12840 -1.3 -3.6 pyruvate dehydrogenase compare
BPHYT_RS16835 -1.2 -6.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS04335 -1.2 -1.6 membrane protein compare
BPHYT_RS22930 -1.2 -1.8 type II secretion system protein compare
BPHYT_RS17035 -1.2 -2.9 sugar kinase compare
BPHYT_RS04965 -1.2 -5.3 ATP-binding protein compare
BPHYT_RS06530 -1.2 -2.0 membrane protein compare
BPHYT_RS02965 -1.2 -3.2 membrane protein compare
BPHYT_RS23910 -1.2 -2.2 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS04370 -1.1 -2.0 glycosyl transferase compare
BPHYT_RS16340 -1.1 -6.0 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS06075 -1.1 -3.5 hypothetical protein compare
BPHYT_RS23940 -1.1 -1.9 GntR family transcriptional regulator compare
BPHYT_RS15415 -1.1 -9.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17530 -1.1 -4.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS33645 -1.1 -3.8 homoserine kinase compare
BPHYT_RS16180 -1.1 -1.0 TetR family transcriptional regulator compare
BPHYT_RS32260 -1.1 -1.8 hypothetical protein compare
BPHYT_RS09690 -1.0 -1.5 phosphate starvation-inducible protein PsiF compare
BPHYT_RS33610 -1.0 -1.4 DNA polymerase I compare
BPHYT_RS15290 -1.0 -2.4 tRNA-Arg compare
BPHYT_RS09480 -1.0 -1.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS33060 -1.0 -2.0 hypothetical protein compare
BPHYT_RS22835 -1.0 -1.1 flagellar motor protein MotA compare
BPHYT_RS33150 -1.0 -1.0 beta-lactamase compare
BPHYT_RS35885 -1.0 -3.9 hypothetical protein compare
BPHYT_RS35205 -1.0 -2.5 hypothetical protein compare
BPHYT_RS19610 -0.9 -1.7 general secretion pathway protein GspC compare
BPHYT_RS12535 -0.9 -1.2 membrane protein compare
BPHYT_RS12925 -0.9 -1.1 exodeoxyribonuclease III compare
BPHYT_RS29920 -0.9 -1.1 hypothetical protein compare
BPHYT_RS17905 -0.9 -1.3 fimbrial assembly family protein compare
BPHYT_RS14755 -0.9 -2.2 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS17890 -0.9 -1.3 shikimate kinase compare
BPHYT_RS29855 -0.9 -0.9 protein-tyrosine-phosphatase compare
BPHYT_RS26855 -0.9 -2.8 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS26300 -0.9 -1.6 ATP-dependent DNA ligase compare
BPHYT_RS20790 -0.9 -1.0 TetR family transcriptional regulator compare
BPHYT_RS21350 -0.9 -2.4 ADP-glucose pyrophosphorylase compare
BPHYT_RS02285 -0.9 -3.9 cell division protein compare
BPHYT_RS01625 -0.9 -2.4 chemotaxis protein CheY compare
BPHYT_RS36385 -0.9 -0.9 TetR family transcriptional regulator compare
BPHYT_RS35310 -0.9 -1.5 GCN5 family N-acetyltransferase compare
BPHYT_RS24565 -0.9 -1.6 membrane protein compare
BPHYT_RS16345 -0.9 -3.3 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS34085 -0.9 -1.9 polyamine ABC transporter permease compare
BPHYT_RS21340 -0.8 -3.1 2OG-Fe(II) oxygenase compare
BPHYT_RS21620 -0.8 -1.4 GCN5 family acetyltransferase compare
BPHYT_RS24315 -0.8 -1.9 phosphoribosyltransferase compare
BPHYT_RS32280 -0.8 -1.9 membrane protein compare
BPHYT_RS12060 -0.8 -1.3 hypothetical protein compare
BPHYT_RS07705 -0.8 -1.7 arginine succinyltransferase compare
BPHYT_RS27720 -0.8 -1.2 hypothetical protein compare
BPHYT_RS09330 -0.8 -5.8 phytoene synthase compare
BPHYT_RS27495 -0.8 -1.1 hypothetical protein compare
BPHYT_RS16880 -0.8 -0.9 malic enzyme compare
BPHYT_RS13935 -0.8 -1.8 mannosyltransferase compare
BPHYT_RS19545 -0.8 -3.0 nuclear protein SET compare
BPHYT_RS33135 -0.8 -1.6 LysR family transcriptional regulator compare
BPHYT_RS30160 -0.8 -1.6 AraC family transcriptional regulator compare
BPHYT_RS17445 -0.8 -3.7 GTP-binding protein YchF compare
BPHYT_RS06990 -0.8 -1.2 membrane protein compare
BPHYT_RS14400 -0.8 -2.1 anti-sigma factor compare
BPHYT_RS03645 -0.8 -1.6 tRNA dimethylallyltransferase compare
BPHYT_RS09500 -0.8 -4.4 glucose-6-phosphate isomerase compare
BPHYT_RS00685 -0.8 -2.4 transcriptional regulator compare
BPHYT_RS36355 -0.8 -2.0 hypothetical protein compare
BPHYT_RS30130 -0.8 -1.3 AraC family transcriptional regulator compare
BPHYT_RS17030 -0.8 -1.1 lipid hydroperoxide peroxidase compare
BPHYT_RS03730 -0.8 -1.5 transcriptional repressor NrdR compare
BPHYT_RS03400 -0.7 -0.8 ATP-dependent DNA helicase RecG compare
BPHYT_RS26240 -0.7 -2.5 hypothetical protein compare
BPHYT_RS06985 -0.7 -3.7 fumarate hydratase compare
BPHYT_RS21460 -0.7 -1.8 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS14380 -0.7 -3.0 elongation factor 4 compare
BPHYT_RS05705 -0.7 -0.9 hypothetical protein compare
BPHYT_RS04430 -0.7 -1.5 amino acid ABC transporter ATPase compare
BPHYT_RS12590 -0.7 -1.2 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS15140 -0.7 -2.0 beta-hydroxyacyl-ACP dehydratase compare
BPHYT_RS18255 -0.7 -1.3 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS12265 -0.7 -1.2 alanine acetyltransferase compare
BPHYT_RS01620 -0.7 -4.5 sensor histidine kinase compare
BPHYT_RS34035 -0.7 -1.6 type II and III secretion system outermembrane protein, secretin compare
BPHYT_RS15190 -0.7 -1.4 acyl carrier protein compare
BPHYT_RS15075 -0.7 -1.4 dihydrokaempferol 4-reductase compare
BPHYT_RS15615 -0.7 -2.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS13760 -0.7 -2.6 hypothetical protein compare
BPHYT_RS14135 -0.7 -2.6 phosphate transporter permease subunit PtsA compare
BPHYT_RS10965 -0.7 -1.7 hypothetical protein compare
BPHYT_RS28075 -0.7 -0.8 cytochrome B561 compare
BPHYT_RS19305 -0.7 -3.6 ATP-dependent DNA helicase Rep compare
BPHYT_RS17040 -0.7 -2.4 membrane protein compare
BPHYT_RS27800 -0.7 -2.3 esterase compare
BPHYT_RS10125 -0.7 -1.4 hypothetical protein compare
BPHYT_RS14140 -0.7 -1.1 phosphate transporter permease subunit PstC compare
BPHYT_RS26025 -0.7 -0.7 hypothetical protein compare
BPHYT_RS13160 -0.7 -1.0 membrane protein compare
BPHYT_RS04630 -0.7 -1.9 amino acid ABC transporter permease compare
BPHYT_RS12725 -0.7 -5.2 regulator compare
BPHYT_RS10115 -0.7 -1.8 hypothetical protein compare
BPHYT_RS14370 -0.7 -1.5 ribonuclease III compare
BPHYT_RS33765 -0.7 -0.8 membrane protein compare
BPHYT_RS07325 -0.7 -0.8 GntR family transcriptional regulator compare
BPHYT_RS11900 -0.7 -2.2 LysR family transcriptional regulator compare
BPHYT_RS23370 -0.7 -1.3 glycosyl transferase family 1 compare
BPHYT_RS24410 -0.7 -2.4 type VI secretion protein compare
BPHYT_RS25710 -0.6 -1.5 hypothetical protein compare
BPHYT_RS04720 -0.6 -2.8 transcriptional regulator compare
BPHYT_RS23210 -0.6 -1.1 MFS transporter compare
BPHYT_RS34805 -0.6 -3.4 ABC transporter compare
BPHYT_RS36400 -0.6 -0.9 hypothetical protein compare
BPHYT_RS05455 -0.6 -1.4 AraC family transcriptional regulator compare
BPHYT_RS36275 -0.6 -0.8 hypothetical protein compare
BPHYT_RS26675 -0.6 -1.6 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS29500 -0.6 -1.1 hypothetical protein compare
BPHYT_RS07690 -0.6 -2.1 AraC family transcriptional regulator compare
BPHYT_RS13645 -0.6 -5.2 threonine--tRNA ligase compare
BPHYT_RS17100 -0.6 -3.0 RNA pyrophosphohydrolase compare
BPHYT_RS05335 -0.6 -1.5 AraC family transcriptional regulator compare
BPHYT_RS14670 -0.6 -1.0 hypothetical protein compare
BPHYT_RS21595 -0.6 -1.3 TetR family transcriptional regulator compare
BPHYT_RS27865 -0.6 -2.5 ATPase compare
BPHYT_RS33615 -0.6 -1.8 decarboxylase compare
BPHYT_RS36470 -0.6 -1.3 hypothetical protein compare
BPHYT_RS28350 -0.6 -1.4 fatty acid desaturase compare
BPHYT_RS01965 -0.6 -1.1 tRNA-Ala compare
BPHYT_RS09135 -0.6 -4.1 ribosomal large subunit pseudouridine synthase D compare
BPHYT_RS19565 -0.6 -3.3 gamma-glutamyl:cysteine ligase compare
BPHYT_RS23855 -0.6 -2.1 hypothetical protein compare
BPHYT_RS19760 -0.6 -2.9 AraC family transcriptional regulator compare
BPHYT_RS20185 -0.6 -0.9 sugar transferase compare
BPHYT_RS04340 -0.6 -2.6 hypothetical protein compare
BPHYT_RS07815 -0.6 -1.5 phosphonate transporter compare
BPHYT_RS03570 -0.6 -3.0 heat-inducible transcription repressor HrcA compare
BPHYT_RS15545 -0.6 -1.4 isoaspartyl peptidase compare
BPHYT_RS23155 -0.6 -1.0 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS05365 -0.6 -1.0 3-ketoacyl-ACP reductase compare
BPHYT_RS34810 -0.6 -3.1 RND transporter compare
BPHYT_RS30845 -0.6 -1.2 polyketide cyclase compare
BPHYT_RS36435 -0.6 -0.7 hypothetical protein compare
BPHYT_RS12785 -0.6 -2.2 Rrf2 family transcriptional regulator compare
BPHYT_RS18910 -0.6 -0.7 FlgN compare
BPHYT_RS30285 -0.6 -1.2 succinate-semialdehyde dehydrogenase compare
BPHYT_RS01425 -0.6 -2.6 3-phosphoglycerate dehydrogenase compare
BPHYT_RS19835 -0.6 -2.9 XRE family transcriptional regulator compare
BPHYT_RS04885 -0.6 -1.2 threonine-phosphate decarboxylase compare
BPHYT_RS11480 -0.6 -2.1 heme ABC transporter ATP-binding protein compare
BPHYT_RS24350 -0.6 -0.9 hypothetical protein compare
BPHYT_RS16905 -0.6 -2.8 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS05615 -0.6 -1.8 hypothetical protein compare
BPHYT_RS06375 -0.6 -2.0 ribonuclease compare
BPHYT_RS07050 -0.6 -1.3 membrane protein compare
BPHYT_RS00110 -0.6 -1.4 ethanolamine ammonia-lyase small subunit compare
BPHYT_RS04970 -0.6 -2.0 superoxide dismutase compare
BPHYT_RS34050 -0.6 -1.8 secretion system protein F compare
BPHYT_RS22765 -0.6 -2.4 beta-galactosidase compare
BPHYT_RS14180 -0.6 -1.7 membrane protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in pH experiments