Experiment set2IT062 for Sinorhizobium meliloti 1021

Compare to:

LB, pH6

200 most important genes:

  gene name fitness t score description  
SMc01206 -3.8 -1.8 queuine tRNA-ribosyltransferase compare
SMc00334 -3.6 -1.9 cytidylate kinase compare
SMa1924 -3.4 -1.1 hypothetical protein compare
SMc00619 -3.2 -2.2 hypothetical protein compare
SMc03850 -3.0 -1.5 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc00987 -2.8 -3.2 hypothetical protein compare
SMc01280 -2.8 -2.1 protease compare
SMc01337 -2.7 -1.3 hypothetical protein compare
SMc01845 -2.5 -2.4 transglycosylase transmembrane protein compare
SMc04220 -2.5 -1.5 transcriptional regulator compare
SMc01187 -2.5 -2.0 rare lipoprotein A compare
SMc00726 -2.4 -0.8 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc02362 -2.3 -2.1 cytochrome c-type biogenesis protein CcmE compare
SMc02144 -2.2 -3.8 phosphate ABC transporter permease compare
SMc01178 -2.2 -1.2 multidrug transmembrane resistance signal peptide protein compare
SMc04385 -2.2 -4.2 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc00712 -2.1 -1.9 hypothetical protein compare
SMc03242 -2.1 -3.4 GTP-binding protein compare
SM_b20105 -2.1 -1.3 transcriptional regulator compare
SMc00492 -2.0 -1.0 hypothetical protein compare
SM_b20413 -2.0 -1.2 hypothetical protein compare
SMc00576 -2.0 -4.2 hypothetical protein compare
SMc00928 -2.0 -1.3 signal peptide protein compare
SMc02901 -2.0 -0.9 hypothetical protein compare
SMc01364 -1.9 -1.1 DNA topoisomerase I compare
SMc02856 -1.9 -7.6 penicillin-binding protein compare
SMc02309 -1.8 -3.5 arsenate reductase compare
SMc02149 -1.8 -1.2 hypothetical protein compare
SMc02145 -1.8 -0.8 signal peptide protein compare
SMc00709 -1.8 -3.1 hypothetical protein compare
SM_b20260 -1.8 -2.2 hypothetical protein compare
SMc02510 -1.7 -0.8 ferric uptake regulation protein compare
SMc02850 -1.7 -3.4 DNA polymerase I compare
SMc02909 -1.7 -1.9 transglycosylase transmembrane protein compare
SMc02693 -1.7 -1.3 peptidyl-tRNA hydrolase compare
SMc02867 -1.7 -2.9 multidrug-efflux system transmembrane protein compare
SMc00072 -1.6 -1.2 peroxiredoxin protein compare
SMc01568 -1.6 -0.8 hypothetical protein compare
SMc03876 -1.6 -3.2 HEAT shock-like protein compare
SMc02868 -1.6 -4.2 multidrug efflux system protein compare
SMc02858 -1.6 -0.7 chaperone protein DnaJ compare
SMa0886 -1.5 -1.2 hypothetical protein compare
SMc00321 -1.5 -4.2 tRNA pseudouridine synthase B compare
SMc01204 -1.4 -7.0 transmembrane oxidoreductase compare
SMc00856 -1.4 -1.1 hypothetical protein compare
SMa0450 -1.4 -1.3 hypothetical protein compare
SMc00073 -1.4 -1.8 hypothetical protein compare
SMa0132 -1.4 -1.5 hypothetical protein compare
SMc01770 -1.4 -1.7 serine hydroxymethyltransferase compare
SMc00451 -1.4 -6.0 processing protease compare
SMc03849 -1.4 -1.1 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SMc01342 -1.4 -3.7 hypothetical protein compare
SMc02050 -1.4 -3.0 trigger factor compare
SM_b20955 -1.4 -2.8 endo-beta-1,3-1,4-glycanase compare
SMc02906 -1.3 -0.8 hypothetical protein compare
SMc00026 -1.3 -5.4 hypothetical protein compare
SMc03973 -1.3 -5.1 hypothetical protein compare
SMc00169 -1.3 -8.3 malic enzyme compare
SMc01850 -1.3 -2.4 hypothetical protein compare
SMc02306 -1.3 -1.1 hypothetical protein compare
SMc00565 -1.3 -1.2 50S ribosomal protein L9 compare
SMc03878 -1.3 -1.8 acetoacetyl-CoA reductase compare
SM_b21173 -1.2 -1.7 hypothetical protein compare
SM_b20750 -1.2 -1.3 dehydrogenase compare
SMa5023 -1.2 -2.7 hypothetical protein compare
SMc04383 -1.2 -3.0 putative hydrolase, required for lysine catabolism (from data) compare
SMc03834 -1.2 -1.1 pterin-4-alpha-carbinolamine dehydratase compare
SMc02897 -1.2 -2.4 cytochrome C transmembrane protein compare
SMc02085 -1.2 -6.2 biopolymer transport transmembrane protein compare
SMc02363 -1.2 -1.7 cytochrome C-type biogenesis transmembrane protein compare
SMc04296 -1.2 -0.8 cell division protein FtsZ compare
SMc04226 -1.1 -2.0 lipoprotein transmembrane compare
SMc04333 -1.1 -3.4 hypothetical protein compare
SMc00104 -1.1 -2.6 hypothetical protein compare
SM_b20942 -1.1 -3.1 UDP glucose 4-epimerase compare
SMa0964 -1.1 -2.1 hypothetical protein compare
SMa2020 -1.1 -3.5 Transcriptional regulator compare
SMa1639 -1.1 -0.8 hypothetical protein compare
SMc01447 -1.1 -1.0 hypothetical protein compare
SM_b21580 -1.1 -1.1 hypothetical protein compare
SM_b20752 -1.1 -3.2 3-hydroxyisobutyryl-CoA hydrolase compare
SM_b21679 -1.1 -0.7 hypothetical protein compare
SMc04231 -1.1 -5.2 excinuclease ABC subunit B compare
SMc02737 -1.1 -3.3 glycine betaine-binding ABC transporter protein compare
SMc00053 -1.1 -0.7 monovalent cation/H+ antiporter subunit C compare
SMa0249 -1.1 -1.5 TRAP-type small permease component compare
SM_b20880 -1.1 -4.9 ATP-dependent RNA helicase compare
SMc03046 -1.1 -2.6 transcriptional regulator compare
SMc04242 -1.1 -1.2 zinc uptake regulation protein compare
SMc00826 -1.0 -2.8 16S ribosomal RNA methyltransferase RsmE compare
SMc00006 -1.0 -1.8 hypothetical protein compare
SMc00468 -1.0 -4.4 hypothetical protein compare
SM_b20946 -1.0 -4.0 galactosyltransferase compare
SMc01147 -1.0 -2.3 coproporphyrinogen III oxidase compare
SMc04346 -1.0 -3.9 ketol-acid reductoisomerase compare
SMc01581 -1.0 -2.0 hypothetical protein compare
SMc02114 -1.0 -2.5 hypothetical protein compare
SMc02425 -1.0 -1.9 transcriptional regulator compare
SMc01608 -1.0 -3.4 ABC transporter ATP-binding protein compare
SM_b21175 -1.0 -2.4 phosphate uptake ABC transporter permease compare
SMc03128 -1.0 -2.6 ABC transporter permease compare
SMa0955 -1.0 -1.1 GntR family transcriptional regulator compare
SMc00959 -1.0 -1.3 hypothetical protein compare
SMc03091 -1.0 -3.2 arginase compare
SM_b21591 -1.0 -1.2 GntR family transcriptional regulator compare
SMc01606 -1.0 -4.5 permease compare
SMc01347 -0.9 -2.5 hypothetical protein compare
SMc01207 -0.9 -1.1 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc04186 -0.9 -2.5 hypothetical protein compare
SMc00948 -0.9 -4.1 glutamine synthetase compare
SMc03184 -0.9 -0.8 PH adaptation potassium efflux system G transmembrane protein compare
SMc00675 -0.9 -4.9 hypothetical protein compare
SMc02615 -0.9 -1.4 signal peptide protein compare
SMc00378 -0.9 -1.5 exodeoxyribonuclease VII large subunit compare
SM_b20017 -0.9 -4.4 sugar ABC transporter ATP-binding protein compare
SM_b20452 -0.9 -1.9 hypothetical protein compare
SMa1240 -0.9 -0.7 NapF ferredoxin component of periplasmic nitrate reductase compare
SMc01361 -0.9 -2.7 dihydroorotase compare
SM_b20701 -0.9 -0.6 hypothetical protein compare
SMc03037 -0.9 -1.9 flagellin A compare
SMc01235 -0.9 -5.0 excinuclease ABC subunit A compare
SMc04085 -0.9 -2.2 hypothetical protein compare
SMc00470 -0.9 -2.3 hypothetical protein compare
SMc01183 -0.9 -1.0 LexA repressor compare
SMc01607 -0.9 -3.6 permease compare
SMc00414 -0.9 -5.0 hypothetical protein compare
SMc00302 -0.9 -0.9 hypothetical protein compare
SMa1361 -0.9 -1.4 hypothetical protein compare
SMc00247 -0.9 -5.1 phosphatidylcholine synthase compare
SMc02505 -0.9 -1.1 hypothetical protein compare
SM_b20347 -0.9 -1.5 transcriptional regulator compare
SM_b21120 -0.9 -2.6 hypothetical protein compare
SMa0789 -0.8 -1.3 GntR family transcriptional regulator compare
SM_b21100 -0.8 -1.1 polysaccharide deacetylase compare
SMa1170 -0.8 -1.9 hypothetical protein compare
SMc03787 -0.8 -3.4 hypothetical protein compare
SMc03124 -0.8 -2.3 periplasmic binding ABC transporter protein compare
SMc02143 -0.8 -2.6 phosphate ABC transporter permease compare
SMc01575 -0.8 -4.9 hypothetical protein compare
SMc00352 -0.8 -1.1 acetyltransferase compare
SMc02753 -0.8 -0.8 PTS system transporter subunit IIA compare
SMc02833 -0.8 -0.8 penicillin-insensitive murein endopeptidase compare
SM_b20307 -0.8 -0.6 dihydroxyacetone kinase compare
SMc03863 -0.8 -1.6 50S ribosomal protein L19 compare
SMc01984 -0.8 -1.3 cytochrome-C oxidase transmembrane protein compare
SMc01153 -0.8 -0.9 enoyl-CoA hydratase compare
SMa1056 -0.8 -0.6 transcriptional regulator compare
SMc03777 -0.8 -2.8 gamma-glutamyl phosphate reductase compare
SMc01403 -0.8 -3.7 transcriptional regulator compare
SMc02497 -0.8 -1.2 hypothetical protein compare
SMc00346 -0.8 -2.7 hypothetical protein compare
SMc03776 -0.8 -1.5 gamma-glutamyl kinase compare
SMc02107 -0.8 -0.7 hypothetical protein compare
SM_b21210 -0.8 -1.9 two-component response regulator protein compare
SMa0291 -0.8 -1.2 hypothetical protein compare
SMc02846 -0.8 -3.2 sugar kinase compare
SMc03941 -0.8 -1.5 hypothetical protein compare
SMa0341 -0.8 -1.3 hypothetical protein compare
SMc01461 -0.8 -2.4 DNA helicase II protein compare
SMa0934 -0.8 -2.3 TraA1 conjugal transfer protein compare
SMc01965 -0.8 -1.6 spermidine/putrescine ABC transporter ATP-binding protein compare
SMa2414 -0.8 -5.8 RhtA rhizobactin receptor precursor compare
SMc00461 -0.8 -0.9 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMc01007 -0.8 -1.2 hypothetical protein compare
SM_b21361 -0.8 -2.8 hypothetical protein compare
SMc04161 -0.8 -2.6 hypothetical protein compare
SM_b20600 -0.8 -2.1 hypothetical protein compare
SM_b20098 -0.8 -2.5 hypothetical protein compare
SMc02391 -0.8 -3.8 hypothetical protein compare
SMc00347 -0.8 -1.5 nucleoside diphosphate kinase regulator compare
SMc02783 -0.8 -1.8 hypothetical protein compare
SMa0247 -0.8 -2.6 2-dehydro-3-deoxy-D-arabinonate dehydratase, 2,4-dioxopentanoate forming (from data) compare
SMc00034 -0.8 -2.5 oxidoreductase compare
SM_b20530 -0.8 -1.4 hypothetical protein compare
SM_b20767 -0.8 -2.2 dihydroxyacetone kinase compare
SMc00970 -0.7 -1.5 exodeoxyribonuclease VII small subunit compare
SMc00937 -0.7 -4.6 TRK system potassium uptake transmembrane protein compare
SMc00740 -0.7 -1.7 hypothetical protein compare
SMc04024 -0.7 -3.1 membrane-bound lytic murein transglycosylase compare
SM_b21329 -0.7 -1.6 hypothetical protein compare
SM_b20219 -0.7 -1.7 response regulator protein compare
SM_b20773 -0.7 -1.6 GntR family transcriptional regulator compare
SM_b21026 -0.7 -1.9 exopeptide compare
SMa0736 -0.7 -1.0 hypothetical protein compare
SMc02221 -0.7 -1.3 hypothetical protein compare
SMc00602 -0.7 -2.9 excinuclease ABC subunit C compare
SMc02900 -0.7 -1.5 hypothetical protein compare
SMa1545 -0.7 -2.9 NuoJ2 NADH:quinone oxidoreductase subunit 6 (chain J) compare
SMc03235 -0.7 -1.7 hypothetical protein compare
SMc00876 -0.7 -2.3 ATP-binding MRP protein compare
SMa0217 -0.7 -3.2 ABC transporter permease compare
SMc02835 -0.7 -3.4 glucokinase compare
SMc02354 -0.7 -1.8 hypothetical protein compare
SMc00579 -0.7 -1.7 dimethyladenosine transferase compare
SMa0166 -0.7 -1.3 hypothetical protein compare
SMa2113 -0.7 -2.3 glutathione-dependent dehydrogenase compare
SMc04029 -0.7 -2.7 low specificity L-threonine aldolase compare
SMa5027 -0.7 -1.7 hypothetical protein compare
SMc01258 -0.7 -2.6 hypothetical protein compare
SM_b20360 -0.7 -2.6 hypothetical protein compare


Specific Phenotypes

For 11 genes in this experiment