Experiment set2IT062 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 5g/L bicarb, 40 psi H2CO2

200 most important genes:

  gene name fitness t score description  
MMJJ_RS06695 -4.9 -3.4 amidohydrolase compare
MMJJ_RS06510 -4.4 -4.2 LL-diaminopimelate aminotransferase compare
MMJJ_RS03895 -4.2 -4.9 hydrogenase expression/formation protein HypE compare
MMJJ_RS09190 -4.0 -3.5 tryptophan synthase subunit beta compare
MMJJ_RS04730 -3.9 -3.8 tyrosine decarboxylase MfnA compare
MMJJ_RS00450 -3.6 -3.4 DUF126 domain-containing protein compare
MMJJ_RS06910 -3.6 -4.9 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06040 -3.4 -4.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS00360 -3.4 -3.3 adenosylhomocysteinase compare
MMJJ_RS00125 -3.3 -3.8 KEOPS complex subunit Cgi121 compare
MMJJ_RS03055 -3.3 -5.3 hypothetical protein compare
MMJJ_RS04200 -3.2 -8.0 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS01870 -3.2 -3.4 methanogenesis marker 15 protein compare
MMJJ_RS00275 -3.2 -3.5 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS08625 -3.2 -10.0 magnesium/cobalt transporter CorA compare
MMJJ_RS06805 -3.2 -4.7 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS05620 -3.2 -5.2 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05995 -3.1 -3.2 ATP-binding cassette domain-containing protein compare
MMJJ_RS06175 -3.1 -3.5 DUF1743 domain-containing protein compare
MMJJ_RS08535 -3.0 -4.9 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS03760 -3.0 -4.5 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS03200 -3.0 -2.7 uroporphyrinogen-III synthase compare
MMJJ_RS07950 -3.0 -4.2 4Fe-4S binding protein compare
MMJJ_RS01750 -3.0 -4.0 ferrous iron transport protein A compare
MMJJ_RS08840 -2.9 -5.5 calcium/sodium antiporter compare
MMJJ_RS06600 -2.9 -3.9 DUF555 domain-containing protein compare
MMJJ_RS03840 -2.9 -4.7 DHH family phosphoesterase compare
MMJJ_RS03270 -2.9 -2.7 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS04685 -2.9 -11.3 carbamoyltransferase HypF compare
MMJJ_RS04485 -2.9 -10.9 riboflavin synthase compare
MMJJ_RS01935 -2.9 -5.9 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06225 -2.9 -3.2 adenosylmethionine decarboxylase compare
MMJJ_RS07470 -2.9 -3.3 50S ribosome-binding GTPase compare
MMJJ_RS05535 -2.8 -13.4 hypothetical protein compare
MMJJ_RS01600 -2.8 -4.1 radical SAM protein compare
MMJJ_RS07430 -2.8 -5.2 ribonuclease VapC compare
MMJJ_RS04475 -2.7 -5.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS05445 -2.7 -3.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS03615 -2.7 -3.6 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06625 -2.6 -3.0 pyruvate synthase subunit PorB compare
MMJJ_RS00645 -2.6 -14.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS06750 -2.6 -4.1 homoaconitase large subunit compare
MMJJ_RS07705 -2.6 -3.8 GTP-binding protein EngB compare
MMJJ_RS07350 -2.6 -5.0 4Fe-4S binding protein compare
MMJJ_RS08080 -2.5 -11.2 TIGR00300 family protein compare
MMJJ_RS08325 -2.5 -4.0 glycosyltransferase family 2 protein compare
MMJJ_RS06840 -2.5 -5.1 nickel-dependent hydrogenase large subunit compare
MMJJ_RS07980 -2.5 -12.7 biotin synthase BioB compare
MMJJ_RS06270 -2.5 -10.8 dethiobiotin synthase compare
MMJJ_RS04145 -2.5 -11.4 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS01755 -2.5 -3.6 ferrous iron transport protein B compare
MMJJ_RS06705 -2.5 -5.5 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS00370 -2.5 -3.5 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS03820 -2.4 -3.8 hydrogenase formation protein HypD compare
MMJJ_RS03125 -2.4 -5.5 GMC oxidoreductase compare
MMJJ_RS02090 -2.4 -6.7 tyramine--L-glutamate ligase compare
MMJJ_RS03670 -2.4 -4.9 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS02045 -2.4 -3.5 molybdenum cofactor guanylyltransferase compare
MMJJ_RS08055 -2.4 -7.7 methanogenesis marker 14 protein compare
MMJJ_RS04995 -2.4 -6.6 Tfx family DNA-binding protein compare
MMJJ_RS08660 -2.3 -4.5 acetylornithine transaminase compare
MMJJ_RS04595 -2.3 -5.3 hypothetical protein compare
MMJJ_RS06860 -2.3 -3.5 hypothetical protein compare
MMJJ_RS02200 -2.3 -11.3 chorismate pyruvate-lyase family protein compare
MMJJ_RS05650 -2.3 -4.0 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS00560 -2.3 -4.4 homoisocitrate dehydrogenase compare
MMJJ_RS03170 -2.3 -11.4 DUF5612 domain-containing protein compare
MMJJ_RS07245 -2.3 -6.2 amidohydrolase family protein compare
MMJJ_RS06255 -2.3 -8.0 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS01345 -2.3 -4.4 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS06490 -2.2 -3.7 methanogenesis marker 2 protein compare
MMJJ_RS09135 -2.2 -9.7 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS07455 -2.2 -7.6 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS04520 -2.2 -6.0 coenzyme F430 synthase compare
MMJJ_RS01350 -2.2 -7.2 sodium:proton antiporter compare
MMJJ_RS07720 -2.2 -4.0 UPF0058 family protein compare
MMJJ_RS05155 -2.2 -5.1 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06155 -2.2 -6.4 phosphatidylglycerophosphatase A compare
MMJJ_RS00475 -2.2 -2.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS06265 -2.1 -12.7 8-amino-7-oxononanoate synthase compare
MMJJ_RS03005 -2.1 -3.7 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS09130 -2.1 -2.8 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS09175 -2.1 -1.5 anthranilate synthase component I compare
MMJJ_RS06260 -2.1 -8.1 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS03110 -2.1 -3.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS03230 -2.1 -5.2 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS05260 -2.1 -5.5 ATP-grasp domain-containing protein compare
MMJJ_RS04150 -2.1 -4.0 DUF5379 domain-containing protein compare
MMJJ_RS07000 -2.1 -2.5 TrkH family potassium uptake protein compare
MMJJ_RS07375 -2.1 -10.8 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS04675 -2.1 -7.1 thiamine pyrophosphate-binding protein compare
MMJJ_RS06855 -2.1 -2.8 DUF2104 domain-containing protein compare
MMJJ_RS00570 -2.1 -2.2 ribonuclease P compare
MMJJ_RS06715 -2.0 -10.7 lactaldehyde dehydrogenase compare
MMJJ_RS06930 -2.0 -3.2 type II methionyl aminopeptidase compare
MMJJ_RS00355 -2.0 -3.9 ribonuclease P protein component 4 compare
MMJJ_RS05490 -2.0 -2.9 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS03865 -2.0 -3.3 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS05065 -2.0 -5.1 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS03875 -2.0 -5.0 CBS domain-containing protein compare
MMJJ_RS04700 -2.0 -7.4 deoxyhypusine synthase compare
MMJJ_RS06725 -2.0 -12.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS07785 -2.0 -2.8 fumarate reductase subunit A compare
MMJJ_RS08010 -2.0 -7.7 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS04650 -2.0 -5.7 nitrogenase iron protein compare
MMJJ_RS07360 -2.0 -3.1 TIGR00269 family protein compare
MMJJ_RS03620 -2.0 -5.9 DUF2097 domain-containing protein compare
MMJJ_RS05375 -1.9 -14.6 radical SAM protein compare
MMJJ_RS07725 -1.9 -6.9 DNA primase DnaG compare
MMJJ_RS00600 -1.9 -3.2 hydroxymethylbilane synthase compare
MMJJ_RS01880 -1.9 -3.4 RlmE family RNA methyltransferase compare
MMJJ_RS05655 -1.9 -6.8 HisA/HisF family protein compare
MMJJ_RS03965 -1.9 -2.7 DNA-directed RNA polymerase subunit L compare
MMJJ_RS03060 -1.9 -3.2 methanogenesis marker 7 protein compare
MMJJ_RS07160 -1.9 -14.8 M20 family metallo-hydrolase compare
MMJJ_RS04155 -1.9 -6.9 hypothetical protein compare
MMJJ_RS08155 -1.9 -5.3 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS00205 -1.9 -5.3 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS05950 -1.9 -3.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03650 -1.8 -7.7 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS07345 -1.8 -6.3 homocysteine biosynthesis protein compare
MMJJ_RS07190 -1.8 -4.5 RtcB family protein compare
MMJJ_RS07715 -1.8 -2.4 UbiD family decarboxylase compare
MMJJ_RS03845 -1.8 -4.0 translation initiation factor IF-2 compare
MMJJ_RS02920 -1.8 -2.3 30S ribosomal protein S27ae compare
MMJJ_RS05295 -1.8 -9.5 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS06835 -1.8 -11.4 4Fe-4S binding protein compare
MMJJ_RS06700 -1.8 -5.8 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS02040 -1.8 -3.7 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS05380 -1.8 -1.6 hypothetical protein compare
MMJJ_RS00425 -1.8 -3.7 hypothetical protein compare
MMJJ_RS07945 -1.8 -2.9 4Fe-4S binding protein compare
MMJJ_RS08340 -1.8 -5.3 archaeoflavoprotein AfpA compare
MMJJ_RS03490 -1.7 -2.3 ribonuclease VapC compare
MMJJ_RS07875 -1.7 -2.8 FAD-dependent oxidoreductase compare
MMJJ_RS06390 -1.7 -2.4 NADPH-dependent F420 reductase compare
MMJJ_RS03115 -1.7 -7.5 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS06915 -1.7 -10.5 helix-turn-helix domain-containing protein compare
MMJJ_RS06185 -1.7 -4.5 cobalamin biosynthesis protein compare
MMJJ_RS04680 -1.7 -9.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS08925 -1.7 -10.4 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS06785 -1.7 -7.0 RNA ligase partner protein compare
MMJJ_RS06375 -1.7 -4.5 UbiX family flavin prenyltransferase compare
MMJJ_RS08330 -1.7 -3.0 SufD family Fe-S cluster assembly protein compare
MMJJ_RS08020 -1.6 -9.7 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00195 -1.6 -3.7 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS01810 -1.6 -1.5 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06905 -1.6 -2.0 hypothetical protein compare
MMJJ_RS05935 -1.6 -2.7 Era-like GTP-binding protein compare
MMJJ_RS06760 -1.6 -4.0 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS04565 -1.6 -2.5 sirohydrochlorin nickelochelatase compare
MMJJ_RS06005 -1.6 -8.0 energy conserving hydrogenase EhbF compare
MMJJ_RS04670 -1.6 -2.9 DUF2117 domain-containing protein compare
MMJJ_RS00270 -1.6 -3.4 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS03225 -1.6 -3.0 4Fe-4S binding protein compare
MMJJ_RS02035 -1.6 -6.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS04040 -1.6 -7.2 prefoldin subunit beta compare
MMJJ_RS07955 -1.6 -10.1 ThiF family adenylyltransferase compare
MMJJ_RS05590 -1.6 -2.1 homoserine dehydrogenase compare
MMJJ_RS07155 -1.5 -8.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS00285 -1.5 -10.6 UPF0254 family protein compare
MMJJ_RS04980 -1.5 -4.2 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS06220 -1.5 -4.7 polyamine aminopropyltransferase compare
MMJJ_RS01475 -1.5 -2.1 signal recognition particle-docking protein FtsY compare
MMJJ_RS06865 -1.5 -2.1 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03540 -1.5 -5.4 TIGR00289 family protein compare
MMJJ_RS04800 -1.5 -5.1 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS02275 -1.5 -2.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08000 -1.5 -9.1 HesA/MoeB/ThiF family protein compare
MMJJ_RS03295 -1.5 -10.1 PHP domain-containing protein compare
MMJJ_RS06000 -1.5 -4.7 cation:proton antiporter subunit C compare
MMJJ_RS05330 -1.5 -2.3 DNA polymerase II large subunit compare
MMJJ_RS04750 -1.5 -8.0 5,10-methenyltetrahydromethanopterin hydrogenase compare
MMJJ_RS09375 -1.4 -1.9 hypothetical protein compare
MMJJ_RS05070 -1.4 -2.1 DNA primase catalytic subunit PriS compare
MMJJ_RS08405 -1.4 -9.9 nickel-dependent hydrogenase large subunit compare
MMJJ_RS02855 -1.4 -7.4 DEAD/DEAH box helicase compare
MMJJ_RS08850 -1.4 -3.0 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS08575 -1.4 -3.9 hypothetical protein compare
MMJJ_RS07015 -1.4 -1.8 PFL family protein compare
MMJJ_RS06035 -1.4 -7.4 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS08870 -1.4 -1.9 2-isopropylmalate synthase compare
MMJJ_RS08095 -1.4 -3.9 cobyric acid synthase CobQ compare
MMJJ_RS01410 -1.4 -5.4 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS08250 -1.4 -5.6 hydrogenase maturation peptidase HycI compare
MMJJ_RS01690 -1.4 -3.2 methanogenesis marker 12 protein compare
MMJJ_RS05810 -1.4 -4.1 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS05610 -1.4 -3.2 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS08035 -1.4 -6.2 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS01975 -1.4 -8.2 diphthine synthase compare
MMJJ_RS01860 -1.4 -9.6 tRNA guanosine(15) transglycosylase TgtA compare
MMJJ_RS05540 -1.4 -10.6 LysR family transcriptional regulator compare
MMJJ_RS00210 -1.3 -1.7 DUF530 family protein compare
MMJJ_RS08825 -1.3 -5.5 hypothetical protein compare
MMJJ_RS00995 -1.3 -8.7 TetR/AcrR family transcriptional regulator compare
MMJJ_RS04760 -1.3 -10.2 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMJJ_RS03095 -1.3 -2.4 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS06015 -1.3 -7.7 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS04755 -1.3 -8.5 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMJJ_RS08905 -1.3 -8.2 YcaO-related McrA-glycine thioamidation protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in rich t1 experiments