Experiment set2IT062 for Paraburkholderia graminis OAS925

Compare to:

Uridine carbon source

200 most important genes:

  gene name fitness t score description  
ABIE53_000423 -5.5 -3.8 DnaK suppressor protein compare
ABIE53_006300 -5.3 -2.5 hypothetical protein compare
ABIE53_000667 -4.3 -7.1 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_004811 -3.8 -5.9 tryptophan synthase alpha chain compare
ABIE53_003531 -3.7 -2.5 Fur family ferric uptake transcriptional regulator compare
ABIE53_002004 -3.6 -8.0 anti-sigma factor RsiW compare
ABIE53_000838 -3.5 -8.4 starvation-inducible DNA-binding protein compare
ABIE53_001421 -3.4 -2.3 cytochrome c553 compare
ABIE53_003305 -3.3 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_000883 -3.3 -2.1 colicin import membrane protein compare
ABIE53_004185 -3.3 -6.6 purine nucleosidase conserved
ABIE53_000061 -3.2 -5.4 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_002321 -3.2 -5.7 ribokinase compare
ABIE53_003306 -3.1 -8.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_005281 -3.1 -3.5 cytochrome c oxidase subunit 2 compare
ABIE53_000414 -3.0 -15.5 homoserine O-acetyltransferase compare
ABIE53_002138 -3.0 -6.1 glucose-6-phosphate isomerase compare
ABIE53_004866 -3.0 -16.0 RNA polymerase primary sigma factor compare
ABIE53_000045 -3.0 -7.7 5-formyltetrahydrofolate cyclo-ligase compare
ABIE53_004817 -3.0 -9.7 O-succinylhomoserine sulfhydrylase compare
ABIE53_003735 -3.0 -4.5 hypothetical protein compare
ABIE53_003749 -2.9 -6.3 diaminopimelate decarboxylase compare
ABIE53_001314 -2.9 -10.4 phosphoenolpyruvate carboxylase compare
ABIE53_004227 -2.9 -5.3 signal transduction histidine kinase compare
ABIE53_005218 -2.9 -3.5 hypothetical protein compare
ABIE53_004197 -2.9 -2.8 nucleotide-binding universal stress UspA family protein compare
ABIE53_001230 -2.9 -9.5 sulfate adenylyltransferase subunit 1 compare
ABIE53_003734 -2.9 -9.1 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_000768 -2.9 -10.4 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_002794 -2.9 -2.8 PAS domain S-box-containing protein compare
ABIE53_002116 -2.8 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_003815 -2.8 -2.7 tRNA-Arg compare
ABIE53_003640 -2.8 -7.9 anthranilate synthase component 1 compare
ABIE53_004801 -2.8 -7.0 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit compare
ABIE53_004630 -2.8 -1.3 hypothetical protein compare
ABIE53_005863 -2.7 -11.4 cyclic di-GMP phosphodiesterase Gmr compare
ABIE53_004803 -2.7 -5.5 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_002546 -2.7 -3.0 cell wall-associated NlpC family hydrolase compare
ABIE53_003588 -2.7 -4.5 glutamate 5-kinase compare
ABIE53_004804 -2.7 -7.3 3-isopropylmalate dehydrogenase compare
ABIE53_003157 -2.6 -8.8 chorismate mutase/prephenate dehydratase compare
ABIE53_001226 -2.6 -7.7 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_003445 -2.6 -4.0 succinyl-CoA synthetase beta subunit compare
ABIE53_005164 -2.5 -2.8 L-idonate 5-dehydrogenase compare
ABIE53_005950 -2.5 -2.4 plastocyanin compare
ABIE53_001225 -2.5 -5.6 LysR family cys regulon transcriptional activator compare
ABIE53_001227 -2.5 -2.4 uncharacterized protein (DUF934 family) compare
ABIE53_001228 -2.5 -4.8 phosphoadenosine phosphosulfate reductase compare
ABIE53_002762 -2.5 -4.1 enolase compare
ABIE53_000683 -2.5 -9.2 protoheme IX farnesyltransferase compare
ABIE53_000840 -2.5 -5.4 pyrroline-5-carboxylate reductase compare
ABIE53_002117 -2.4 -5.4 ATP-dependent Lon protease compare
ABIE53_003733 -2.4 -3.7 glutamate synthase domain-containing protein 3 compare
ABIE53_002871 -2.4 -8.3 dihydropyrimidinase compare
ABIE53_000367 -2.4 -2.8 NAD-dependent SIR2 family protein deacetylase compare
ABIE53_005519 -2.4 -2.3 mono/diheme cytochrome c family protein compare
ABIE53_001416 -2.3 -6.4 transaldolase compare
ABIE53_003638 -2.3 -3.8 ribulose-phosphate 3-epimerase compare
ABIE53_001769 -2.3 -2.7 succinylornithine aminotransferase compare
ABIE53_002077 -2.3 -2.2 phosphoserine phosphatase compare
ABIE53_003162 -2.3 -2.2 OOP family OmpA-OmpF porin compare
ABIE53_000885 -2.3 -7.0 biopolymer transport protein TolQ compare
ABIE53_001229 -2.2 -6.8 sulfate adenylyltransferase subunit 2 compare
ABIE53_000063 -2.2 -3.9 adenosylhomocysteinase compare
ABIE53_004258 -2.2 -5.6 beta-alanine--pyruvate transaminase conserved
ABIE53_002739 -2.2 -4.2 outer membrane protein assembly factor BamB compare
ABIE53_000678 -2.2 -6.7 cytochrome c oxidase subunit 3 compare
ABIE53_000201 -2.1 -2.1 hypothetical protein compare
ABIE53_004259 -2.1 -1.4 hypothetical protein compare
ABIE53_002857 -2.1 -10.2 phosphomethylpyrimidine synthase compare
ABIE53_000666 -2.1 -3.2 preprotein translocase subunit SecB compare
ABIE53_006008 -2.1 -2.0 two-component system chemotaxis response regulator CheY compare
ABIE53_001118 -2.1 -2.8 DNA-binding HxlR family transcriptional regulator compare
ABIE53_004065 -2.0 -1.9 fructose transport system substrate-binding protein compare
ABIE53_001232 -2.0 -1.9 sirohydrochlorin cobaltochelatase compare
ABIE53_005294 -2.0 -1.8 low affinity Fe/Cu permease compare
ABIE53_003674 -2.0 -5.0 AcrR family transcriptional regulator compare
ABIE53_002528 -1.9 -2.3 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_000674 -1.9 -6.5 cytochrome c oxidase subunit 1 compare
ABIE53_000306 -1.8 -1.2 general secretion pathway protein M compare
ABIE53_004257 -1.8 -6.5 DNA-binding transcriptional MocR family regulator compare
ABIE53_002324 -1.8 -6.5 ribose transport system ATP-binding protein compare
ABIE53_001420 -1.8 -3.5 cytochrome c553 compare
ABIE53_003737 -1.8 -12.2 outer membrane protein compare
ABIE53_004828 -1.8 -10.7 starch synthase (maltosyl-transferring) compare
ABIE53_000650 -1.8 -7.8 thiol-disulfide isomerase/thioredoxin compare
ABIE53_000858 -1.8 -9.6 heat-inducible transcriptional repressor compare
ABIE53_004188 -1.8 -4.2 nucleoside transporter compare
ABIE53_000465 -1.8 -9.4 cation diffusion facilitator family transporter compare
ABIE53_004435 -1.8 -1.8 hypothetical protein compare
ABIE53_001007 -1.7 -1.6 hypothetical protein compare
ABIE53_001135 -1.7 -2.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
ABIE53_003444 -1.7 -3.9 succinyl-CoA synthetase alpha subunit compare
ABIE53_001544 -1.7 -2.8 coproporphyrinogen III oxidase compare
ABIE53_004495 -1.7 -2.3 hypothetical protein compare
ABIE53_001385 -1.7 -1.5 uncharacterized protein YjbJ (UPF0337 family) compare
ABIE53_001588 -1.7 -3.7 triosephosphate isomerase compare
ABIE53_005390 -1.7 -1.6 hypothetical protein compare
ABIE53_000663 -1.7 -9.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_005198 -1.7 -2.1 rhodanese-related sulfurtransferase compare
ABIE53_004403 -1.7 -2.7 D-xylulose reductase compare
ABIE53_000731 -1.7 -8.9 putative PurR-regulated permease PerM compare
ABIE53_000649 -1.7 -1.9 peroxiredoxin compare
ABIE53_005975 -1.6 -3.7 xanthine dehydrogenase YagT iron-sulfur-binding subunit compare
ABIE53_003472 -1.6 -2.7 3,4-dihydroxy 2-butanone 4-phosphate synthase compare
ABIE53_002872 -1.6 -6.0 NCS1 family nucleobase:cation symporter-1 compare
ABIE53_001408 -1.6 -2.7 hypoxanthine-DNA glycosylase compare
ABIE53_003580 -1.6 -1.9 uncharacterized protein compare
ABIE53_002892 -1.6 -4.1 alkylation response protein AidB-like acyl-CoA dehydrogenase compare
ABIE53_000682 -1.6 -7.3 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_002873 -1.6 -2.5 dihydropyrimidine dehydrogenase (NAD+) subunit PreA compare
ABIE53_003400 -1.5 -3.9 zinc/manganese transport system permease protein compare
ABIE53_002874 -1.5 -4.3 dihydropyrimidine dehydrogenase (NAD+) subunit PreT compare
ABIE53_003410 -1.5 -6.2 TetR/AcrR family acrAB operon transcriptional repressor compare
ABIE53_001145 -1.5 -6.6 lipopolysaccharide transport system permease protein compare
ABIE53_000795 -1.5 -4.5 MurNAc alpha-1-phosphate uridylyltransferase compare
ABIE53_003689 -1.5 -5.7 sec-independent protein translocase protein TatB compare
ABIE53_003494 -1.5 -2.7 Holliday junction DNA helicase RuvA compare
ABIE53_003210 -1.5 -1.5 acyl carrier protein compare
ABIE53_001163 -1.5 -4.9 FlaA1/EpsC-like NDP-sugar epimerase compare
ABIE53_005782 -1.5 -1.1 hypothetical protein compare
ABIE53_004852 -1.5 -8.7 DNA polymerase-1 compare
ABIE53_002101 -1.4 -5.1 two-component system phosphate regulon response regulator OmpR compare
ABIE53_004999 -1.4 -1.9 pilus assembly protein CpaE compare
ABIE53_000978 -1.4 -1.6 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_003495 -1.4 -2.5 Holliday junction DNA helicase RuvB compare
ABIE53_001736 -1.4 -3.1 hypothetical protein compare
ABIE53_001275 -1.4 -1.5 glucose-6-phosphate 1-dehydrogenase compare
ABIE53_002558 -1.4 -2.4 HEAT repeat protein compare
ABIE53_000394 -1.4 -6.9 nitrogen fixation/metabolism regulation signal transduction histidine kinase compare
ABIE53_002862 -1.4 -7.0 outer membrane protein assembly factor BamC compare
ABIE53_001140 -1.4 -2.1 dTDP-4-dehydrorhamnose reductase compare
ABIE53_000435 -1.4 -2.0 hypothetical protein compare
ABIE53_004462 -1.4 -1.0 beta-lactamase class A compare
ABIE53_002605 -1.4 -2.2 polar amino acid transport system substrate-binding protein compare
ABIE53_003017 -1.4 -5.8 trehalose 6-phosphate phosphatase compare
ABIE53_000884 -1.3 -2.7 biopolymer transport protein TolR compare
ABIE53_004987 -1.3 -2.4 transketolase compare
ABIE53_006145 -1.3 -1.7 hypothetical protein compare
ABIE53_002317 -1.3 -6.4 uncharacterized sporulation protein YeaH/YhbH (DUF444 family) compare
ABIE53_003159 -1.3 -4.6 phosphoserine aminotransferase compare
ABIE53_004146 -1.3 -2.0 hypothetical protein compare
ABIE53_000053 -1.3 -7.3 uncharacterized protein YbaP (TraB family) compare
ABIE53_001720 -1.3 -1.5 LysR family transcriptional regulator of abg operon compare
ABIE53_003684 -1.3 -10.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
ABIE53_003754 -1.3 -6.2 cbb3-type cytochrome c oxidase subunit III compare
ABIE53_003474 -1.3 -2.5 transcriptional regulator with XRE-family HTH domain compare
ABIE53_001106 -1.3 -2.9 hypothetical protein compare
ABIE53_006342 -1.3 -3.8 DNA-binding GntR family transcriptional regulator compare
ABIE53_002881 -1.3 -2.6 hypothetical protein compare
ABIE53_003158 -1.3 -2.9 phosphoserine aminotransferase compare
ABIE53_003361 -1.3 -4.3 integrase/recombinase XerD compare
ABIE53_004457 -1.3 -1.5 hypothetical protein compare
ABIE53_002067 -1.3 -5.8 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE53_003881 -1.3 -1.2 dihydroxyacetone kinase-like protein compare
ABIE53_003711 -1.3 -6.7 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
ABIE53_003043 -1.3 -7.8 RNA polymerase sigma-70 factor (ECF subfamily) compare
ABIE53_005802 -1.3 -2.5 hypothetical protein compare
ABIE53_003428 -1.2 -2.8 phosphoglycerate kinase compare
ABIE53_003688 -1.2 -8.2 sec-independent protein translocase protein TatC compare
ABIE53_000726 -1.2 -1.7 threonine/homoserine/homoserine lactone efflux protein compare
ABIE53_000153 -1.2 -7.9 O-antigen ligase compare
ABIE53_000602 -1.2 -1.9 hypothetical protein compare
ABIE53_005545 -1.2 -2.2 trans-feruloyl-CoA hydratase/vanillin synthase compare
ABIE53_001326 -1.2 -1.5 putative ABC transport system ATP-binding protein compare
ABIE53_002533 -1.2 -2.0 tRNA threonylcarbamoyladenosine biosynthesis protein TsaB compare
ABIE53_006037 -1.2 -1.9 type III secretion protein R compare
ABIE53_006533 -1.2 -1.5 octopine/nopaline transport system ATP-binding protein compare
ABIE53_006315 -1.2 -2.1 ACS family tartrate transporter-like MFS transporter compare
ABIE53_003536 -1.2 -4.5 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_002323 -1.2 -5.7 ribose transport system permease protein compare
ABIE53_000375 -1.2 -2.2 PKHD-type hydroxylase compare
ABIE53_002951 -1.2 -2.4 sugar phosphate isomerase/epimerase compare
ABIE53_001644 -1.2 -3.2 aromatic-amino-acid transaminase compare
ABIE53_004232 -1.2 -2.0 osmotically inducible protein OsmC compare
ABIE53_003685 -1.2 -6.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE53_004826 -1.2 -7.4 1,4-alpha-glucan branching enzyme compare
ABIE53_005092 -1.2 -1.8 threonine/homoserine/homoserine lactone efflux protein compare
ABIE53_000798 -1.2 -3.4 peptidyl-prolyl cis-trans isomerase SurA compare
ABIE53_000679 -1.2 -2.7 putative PurR-regulated permease PerM compare
ABIE53_002208 -1.2 -0.9 methyl-accepting chemotaxis protein compare
ABIE53_004325 -1.2 -1.6 hypothetical protein compare
ABIE53_002601 -1.2 -1.3 chaperonin GroES compare
ABIE53_004718 -1.2 -1.0 LysR family glycine cleavage system transcriptional activator compare
ABIE53_005451 -1.2 -1.9 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) compare
ABIE53_002841 -1.1 -2.2 hypothetical protein compare
ABIE53_002424 -1.1 -4.5 anti-sigma factor RsiW compare
ABIE53_002352 -1.1 -5.2 AcrR family transcriptional regulator compare
ABIE53_000122 -1.1 -1.3 hypothetical protein compare
ABIE53_003541 -1.1 -4.8 RNAse (barnase) inhibitor barstar compare
ABIE53_004490 -1.1 -1.1 hypothetical protein compare
ABIE53_002325 -1.1 -5.1 ribose transport system substrate-binding protein compare
ABIE53_005569 -1.1 -3.3 DNA-binding protein H-NS compare
ABIE53_000483 -1.1 -2.5 hypothetical protein compare
ABIE53_003850 -1.1 -1.9 tRNA-Arg compare
ABIE53_005984 -1.1 -1.8 nitrite reductase/ring-hydroxylating ferredoxin subunit compare
ABIE53_006253 -1.1 -3.2 dihydroxy-acid dehydratase compare
ABIE53_000614 -1.1 -2.5 rubrerythrin compare
ABIE53_001667 -1.1 -2.6 hypothetical protein compare
ABIE53_002788 -1.1 -4.4 IclR family KDG regulon transcriptional repressor compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Uridine in Paraburkholderia graminis OAS925

For carbon source Uridine across organisms