Experiment set2IT062 for Burkholderia phytofirmans PsJN

Compare to:

LB, pH7

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14855 -4.9 -4.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS03725 -4.7 -2.7 serine hydroxymethyltransferase compare
BPHYT_RS16710 -3.9 -2.3 LysR family transcriptional regulator compare
BPHYT_RS16245 -3.8 -6.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS03640 -3.7 -5.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS23840 -3.5 -6.5 methyltransferase compare
BPHYT_RS03400 -3.5 -1.6 ATP-dependent DNA helicase RecG compare
BPHYT_RS01485 -3.1 -1.5 histidine kinase compare
BPHYT_RS16255 -3.0 -6.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS02865 -2.7 -5.1 hypothetical protein compare
BPHYT_RS12465 -2.3 -3.9 inositol monophosphatase compare
BPHYT_RS09515 -2.2 -4.6 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14865 -2.0 -2.9 UDP-glucose 6-dehydrogenase compare
BPHYT_RS06175 -2.0 -5.4 LPS biosynthesis compare
BPHYT_RS07705 -1.9 -2.2 arginine succinyltransferase compare
BPHYT_RS23230 -1.8 -2.1 histidine kinase compare
BPHYT_RS16840 -1.8 -3.8 transketolase compare
BPHYT_RS02965 -1.8 -3.3 membrane protein compare
BPHYT_RS06405 -1.7 -7.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS23455 -1.7 -1.5 phosphorylase compare
BPHYT_RS33920 -1.7 -7.7 type II citrate synthase compare
BPHYT_RS16675 -1.7 -2.7 dihydroorotase compare
BPHYT_RS15620 -1.7 -4.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS14845 -1.6 -3.2 cysteine synthase compare
BPHYT_RS16835 -1.6 -7.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06990 -1.6 -2.0 membrane protein compare
BPHYT_RS09825 -1.6 -3.1 Fe-S protein compare
BPHYT_RS25780 -1.6 -1.7 DeoR faimly transcriptional regulator compare
BPHYT_RS33840 -1.6 -7.8 amidophosphoribosyltransferase compare
BPHYT_RS16270 -1.5 -5.2 phosphoglycerate kinase compare
BPHYT_RS04610 -1.5 -4.0 type VI secretion protein ImpA compare
BPHYT_RS26550 -1.5 -2.4 Fis family transcriptional regulator compare
BPHYT_RS06530 -1.5 -1.5 membrane protein compare
BPHYT_RS02610 -1.5 -5.4 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17520 -1.5 -5.0 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS08565 -1.5 -1.5 dihydroorotate dehydrogenase compare
BPHYT_RS21905 -1.4 -1.4 IclR family transcriptional regulator compare
BPHYT_RS29920 -1.3 -1.3 hypothetical protein compare
BPHYT_RS04965 -1.3 -6.4 ATP-binding protein compare
BPHYT_RS02590 -1.3 -5.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS11125 -1.3 -1.7 alkylhydroperoxidase compare
BPHYT_RS29620 -1.3 -1.1 hypothetical protein compare
BPHYT_RS33580 -1.3 -4.2 geranyltranstransferase compare
BPHYT_RS33610 -1.3 -0.8 DNA polymerase I compare
BPHYT_RS12845 -1.3 -9.3 ATPase compare
BPHYT_RS12985 -1.3 -2.3 amino acid acetyltransferase compare
BPHYT_RS33175 -1.2 -2.4 hypothetical protein compare
BPHYT_RS02975 -1.2 -2.6 membrane protein compare
BPHYT_RS33645 -1.2 -4.0 homoserine kinase compare
BPHYT_RS03280 -1.2 -1.7 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS34810 -1.2 -2.7 RND transporter compare
BPHYT_RS32880 -1.2 -1.5 alanine acetyltransferase compare
BPHYT_RS17530 -1.2 -5.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17035 -1.2 -3.4 sugar kinase compare
BPHYT_RS14735 -1.1 -1.3 hypothetical protein compare
BPHYT_RS05335 -1.1 -2.5 AraC family transcriptional regulator compare
BPHYT_RS14450 -1.1 -3.2 hypothetical protein compare
BPHYT_RS15415 -1.1 -8.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS00885 -1.1 -2.1 chemotaxis protein CheY compare
BPHYT_RS04370 -1.1 -1.7 glycosyl transferase compare
BPHYT_RS04285 -1.1 -1.9 rhamnosyltransferase compare
BPHYT_RS24500 -1.0 -1.1 histidine kinase compare
BPHYT_RS04625 -1.0 -2.5 urea ABC transporter ATP-binding protein compare
BPHYT_RS04385 -1.0 -3.0 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS15710 -1.0 -1.6 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS16880 -1.0 -1.0 malic enzyme compare
BPHYT_RS05620 -1.0 -1.3 CsbD family protein compare
BPHYT_RS09650 -1.0 -1.7 hypothetical protein compare
BPHYT_RS09330 -1.0 -6.1 phytoene synthase compare
BPHYT_RS04290 -1.0 -1.2 glycosyl transferase family 2 compare
BPHYT_RS09000 -1.0 -1.1 competence protein ComE compare
BPHYT_RS09585 -1.0 -2.0 hypothetical protein compare
BPHYT_RS26050 -1.0 -3.0 ABC transporter permease compare
BPHYT_RS34220 -0.9 -2.1 L-fucono-1,5-lactonase (from data) compare
BPHYT_RS12990 -0.9 -2.4 iron transporter compare
BPHYT_RS16340 -0.9 -4.7 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS35885 -0.9 -2.3 hypothetical protein compare
BPHYT_RS22360 -0.9 -1.5 response regulator receiver compare
BPHYT_RS08850 -0.9 -1.3 transcriptional regulator compare
BPHYT_RS34410 -0.9 -1.2 hypothetical protein compare
BPHYT_RS28625 -0.9 -1.4 major facilitator transporter compare
BPHYT_RS25065 -0.9 -1.4 glycine/betaine ABC transporter ATPase compare
BPHYT_RS19785 -0.9 -1.7 chemotaxis protein CheY compare
BPHYT_RS14585 -0.9 -1.5 hypothetical protein compare
BPHYT_RS16175 -0.9 -1.9 hemolysin D compare
BPHYT_RS09315 -0.9 -0.9 chemotaxis protein CheY compare
BPHYT_RS17920 -0.9 -1.3 protein CyaY compare
BPHYT_RS08960 -0.9 -1.0 threonine synthase compare
BPHYT_RS02860 -0.9 -1.0 membrane protein compare
BPHYT_RS09480 -0.9 -1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02435 -0.9 -0.7 hypothetical protein compare
BPHYT_RS14380 -0.9 -4.4 elongation factor 4 compare
BPHYT_RS08340 -0.9 -1.2 chemotaxis protein CheY compare
BPHYT_RS02135 -0.9 -2.4 glyoxylate reductase compare
BPHYT_RS17095 -0.9 -2.1 proline--tRNA ligase compare
BPHYT_RS30485 -0.9 -1.1 ABC transporter ATP-binding protein compare
BPHYT_RS20235 -0.8 -2.9 iron ABC transporter compare
BPHYT_RS04455 -0.8 -1.1 glycosyl transferase compare
BPHYT_RS31060 -0.8 -0.9 capsular polysaccharide biosynthesis protein compare
BPHYT_RS18600 -0.8 -1.4 glutathione S-transferase compare
BPHYT_RS02285 -0.8 -3.7 cell division protein compare
BPHYT_RS06900 -0.8 -4.0 aspartate aminotransferase compare
BPHYT_RS14140 -0.8 -2.6 phosphate transporter permease subunit PstC compare
BPHYT_RS27305 -0.8 -1.6 hypothetical protein compare
BPHYT_RS01630 -0.8 -1.8 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS33125 -0.8 -1.3 hypothetical protein compare
BPHYT_RS03090 -0.8 -1.2 hypothetical protein compare
BPHYT_RS33765 -0.8 -0.9 membrane protein compare
BPHYT_RS15290 -0.8 -1.5 tRNA-Arg compare
BPHYT_RS13835 -0.8 -0.9 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS13645 -0.8 -5.9 threonine--tRNA ligase compare
BPHYT_RS15615 -0.8 -1.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS36275 -0.8 -1.1 hypothetical protein compare
BPHYT_RS26355 -0.8 -1.4 hypothetical protein compare
BPHYT_RS17890 -0.8 -0.6 shikimate kinase compare
BPHYT_RS28470 -0.8 -1.4 hypothetical protein compare
BPHYT_RS35080 -0.8 -1.7 short-chain dehydrogenase compare
BPHYT_RS00150 -0.8 -1.6 DEAD/DEAH box helicase compare
BPHYT_RS20940 -0.8 -2.2 citrate synthase compare
BPHYT_RS13200 -0.8 -1.2 molybdopterin binding oxidoreductase compare
BPHYT_RS01965 -0.8 -1.3 tRNA-Ala compare
BPHYT_RS07255 -0.8 -1.9 4-oxalocrotonate decarboxylase compare
BPHYT_RS11405 -0.8 -2.0 hypothetical protein compare
BPHYT_RS27155 -0.8 -1.4 peroxiredoxin compare
BPHYT_RS01945 -0.8 -2.2 hypothetical protein compare
BPHYT_RS12725 -0.8 -5.8 regulator compare
BPHYT_RS32115 -0.8 -2.0 hypothetical protein compare
BPHYT_RS11290 -0.8 -2.2 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) (from data) compare
BPHYT_RS32260 -0.8 -1.2 hypothetical protein compare
BPHYT_RS10740 -0.8 -1.2 LuxR family transcriptional regulator compare
BPHYT_RS14505 -0.8 -1.6 membrane protein compare
BPHYT_RS08060 -0.8 -2.6 ribosome maturation factor RimP compare
BPHYT_RS30720 -0.8 -1.3 hypothetical protein compare
BPHYT_RS24170 -0.8 -1.1 gluconolactonase compare
BPHYT_RS23940 -0.7 -1.3 GntR family transcriptional regulator compare
BPHYT_RS09160 -0.7 -2.7 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS30795 -0.7 -1.0 short-chain dehydrogenase compare
BPHYT_RS04955 -0.7 -1.7 methionyl-tRNA synthetase compare
BPHYT_RS11480 -0.7 -2.6 heme ABC transporter ATP-binding protein compare
BPHYT_RS31385 -0.7 -1.3 ketoacyl reductase compare
BPHYT_RS02725 -0.7 -1.8 GntR family transcriptional regulator compare
BPHYT_RS34560 -0.7 -2.1 hypothetical protein compare
BPHYT_RS19565 -0.7 -3.9 gamma-glutamyl:cysteine ligase compare
BPHYT_RS06350 -0.7 -1.8 chemotaxis protein CheY compare
BPHYT_RS13885 -0.7 -1.3 myo-inositol 2-dehydrogenase compare
BPHYT_RS12065 -0.7 -2.2 RNA methyltransferase compare
BPHYT_RS24210 -0.7 -2.1 urea transporter compare
BPHYT_RS34100 -0.7 -1.1 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS02540 -0.7 -1.0 hypothetical protein compare
BPHYT_RS10095 -0.7 -1.5 integrase compare
BPHYT_RS30340 -0.7 -1.3 AraC family transcriptional regulator compare
BPHYT_RS06410 -0.7 -2.6 transcriptional regulator compare
BPHYT_RS04830 -0.7 -2.0 hypothetical protein compare
BPHYT_RS33135 -0.7 -1.0 LysR family transcriptional regulator compare
BPHYT_RS06610 -0.7 -1.4 triosephosphate isomerase compare
BPHYT_RS07415 -0.7 -3.1 hypothetical protein compare
BPHYT_RS11745 -0.7 -1.0 (2Fe-2S)-binding protein compare
BPHYT_RS22420 -0.7 -1.0 membrane protein compare
BPHYT_RS33110 -0.7 -1.4 chloroperoxidase compare
BPHYT_RS09445 -0.7 -2.7 trigger factor compare
BPHYT_RS14195 -0.7 -1.3 carbamoyl phosphate synthase small subunit compare
BPHYT_RS28200 -0.7 -1.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS00785 -0.7 -2.7 conjugal transfer protein TraH compare
BPHYT_RS23910 -0.7 -1.2 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS01505 -0.7 -1.7 7-cyano-7-deazaguanine reductase compare
BPHYT_RS02130 -0.7 -2.5 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS18270 -0.7 -4.3 phenylacetic acid degradation protein compare
BPHYT_RS12840 -0.7 -2.8 pyruvate dehydrogenase compare
BPHYT_RS14400 -0.7 -1.6 anti-sigma factor compare
BPHYT_RS20025 -0.7 -1.3 crotonase compare
BPHYT_RS24565 -0.7 -1.9 membrane protein compare
BPHYT_RS36570 -0.7 -1.2 histone compare
BPHYT_RS09145 -0.7 -4.8 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS03570 -0.7 -3.5 heat-inducible transcription repressor HrcA compare
BPHYT_RS05320 -0.7 -1.2 beta-lactamase compare
BPHYT_RS10985 -0.7 -2.2 MFS transporter compare
BPHYT_RS33850 -0.7 -0.5 sporulation protein compare
BPHYT_RS00340 -0.7 -2.0 hypothetical protein compare
BPHYT_RS28245 -0.7 -1.3 MFS transporter compare
BPHYT_RS07690 -0.7 -1.4 AraC family transcriptional regulator compare
BPHYT_RS19945 -0.7 -1.9 hypothetical protein compare
BPHYT_RS32525 -0.7 -1.2 hypothetical protein compare
BPHYT_RS36090 -0.7 -1.4 hypothetical protein compare
BPHYT_RS08525 -0.7 -0.8 SAM-dependent methyltransferase compare
BPHYT_RS30160 -0.7 -1.9 AraC family transcriptional regulator compare
BPHYT_RS30860 -0.6 -1.5 sugar ABC transporter permease compare
BPHYT_RS27895 -0.6 -1.7 enoyl-CoA hydratase compare
BPHYT_RS00960 -0.6 -1.4 recombinase RecA compare
BPHYT_RS27720 -0.6 -0.9 hypothetical protein compare
BPHYT_RS22765 -0.6 -2.5 beta-galactosidase compare
BPHYT_RS01955 -0.6 -1.8 hypothetical protein compare
BPHYT_RS06375 -0.6 -2.6 ribonuclease compare
BPHYT_RS08765 -0.6 -0.7 ABC transporter ATP-binding protein compare
BPHYT_RS24760 -0.6 -2.0 cytochrome B561 compare
BPHYT_RS28575 -0.6 -0.7 transcriptional regulator compare
BPHYT_RS08150 -0.6 -0.7 membrane protein compare
BPHYT_RS28705 -0.6 -1.0 IclR family transcriptional regulator compare
BPHYT_RS20245 -0.6 -2.5 iron ABC transporter substrate-binding protein compare
BPHYT_RS00505 -0.6 -2.1 glyoxalase compare
BPHYT_RS25395 -0.6 -1.6 3-oxoacyl-ACP reductase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in pH experiments