Experiment set2IT061 for Sinorhizobium meliloti 1021

Compare to:

LB, pH6

200 most important genes:

  gene name fitness t score description  
SMc00302 -3.2 -2.7 hypothetical protein compare
SMc00619 -3.1 -2.2 hypothetical protein compare
SM_b20105 -3.0 -1.5 transcriptional regulator compare
SMc02510 -3.0 -1.1 ferric uptake regulation protein compare
SMc04220 -2.9 -1.5 transcriptional regulator compare
SMc01206 -2.6 -1.6 queuine tRNA-ribosyltransferase compare
SMc01280 -2.6 -2.1 protease compare
SMc02867 -2.4 -2.4 multidrug-efflux system transmembrane protein compare
SMc00073 -2.4 -2.3 hypothetical protein compare
SMc01207 -2.3 -2.3 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc02362 -2.3 -2.5 cytochrome c-type biogenesis protein CcmE compare
SMc03967 -2.3 -1.4 Holliday junction resolvase compare
SMa1052 -2.2 -1.6 hypothetical protein compare
SMc03242 -2.1 -3.2 GTP-binding protein compare
SM_b20955 -2.1 -3.4 endo-beta-1,3-1,4-glycanase compare
SMc00451 -2.1 -6.5 processing protease compare
SMc00321 -2.1 -5.4 tRNA pseudouridine synthase B compare
SMc02495 -2.0 -1.5 translaldolase compare
SMc03836 -2.0 -1.4 acyl-CoA thioesterase i protein compare
SMc02144 -2.0 -5.2 phosphate ABC transporter permease compare
SMc00239 -1.9 -1.0 hypothetical protein compare
SMc03850 -1.9 -1.2 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02856 -1.9 -8.9 penicillin-binding protein compare
SMc02149 -1.9 -1.6 hypothetical protein compare
SMc00974 -1.9 -2.1 RNA methyltransferase compare
SMc01147 -1.8 -3.1 coproporphyrinogen III oxidase compare
SMc03849 -1.8 -1.1 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SM_b20119 -1.8 -2.7 hypothetical protein compare
SMc04346 -1.8 -4.0 ketol-acid reductoisomerase compare
SMc02143 -1.7 -4.0 phosphate ABC transporter permease compare
SMc01347 -1.7 -3.5 hypothetical protein compare
SMc02145 -1.7 -0.8 signal peptide protein compare
SMc02850 -1.7 -3.0 DNA polymerase I compare
SMc02363 -1.7 -1.7 cytochrome C-type biogenesis transmembrane protein compare
SMc00712 -1.7 -1.5 hypothetical protein compare
SMc04296 -1.7 -0.8 cell division protein FtsZ compare
SMc02238 -1.7 -1.7 hypothetical protein compare
SMa1095 -1.6 -0.8 hypothetical protein compare
SMc02868 -1.6 -2.7 multidrug efflux system protein compare
SMc03100 -1.6 -1.7 hypothetical protein compare
SMc00496 -1.6 -1.2 hypothetical protein compare
SMa0121 -1.6 -2.1 hypothetical protein compare
SMc01939 -1.5 -1.1 urease subunit beta compare
SMc02897 -1.5 -2.7 cytochrome C transmembrane protein compare
SMc01187 -1.5 -1.7 rare lipoprotein A compare
SMc04385 -1.5 -3.6 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc02069 -1.5 -2.9 hypothetical protein compare
SM_b20946 -1.4 -4.6 galactosyltransferase compare
SMc00928 -1.4 -1.3 signal peptide protein compare
SMc02309 -1.4 -3.8 arsenate reductase compare
SMa0882 -1.4 -1.2 hypothetical protein compare
SMc02338 -1.4 -1.5 periplasmic binding ABC transporter protein compare
SM_b20880 -1.4 -6.2 ATP-dependent RNA helicase compare
SMc03863 -1.4 -2.4 50S ribosomal protein L19 compare
SMc00709 -1.4 -2.2 hypothetical protein compare
SMc03124 -1.4 -2.7 periplasmic binding ABC transporter protein compare
SM_b21096 -1.3 -1.0 amino acid transporter ABC transporter ATP-binding protein compare
SMc02505 -1.3 -1.3 hypothetical protein compare
SMc02077 -1.3 -2.3 exodeoxyribonuclease III protein compare
SMc03941 -1.3 -2.3 hypothetical protein compare
SMc00404 -1.3 -0.8 hypothetical protein compare
SMc02544 -1.3 -0.8 hypothetical protein compare
SM_b20953 -1.3 -0.8 hypothetical protein compare
SMc03973 -1.3 -5.3 hypothetical protein compare
SMc02755 -1.3 -4.4 S-adenosyl-L-homocysteine hydrolase compare
SMc02778 -1.3 -0.9 hydroxyacid aldolase compare
SM_b20320 -1.3 -1.0 TRAP-type large permease component compare
SMa0211 -1.3 -1.1 hypothetical protein compare
SMa0748 -1.3 -1.4 MucR family transcriptional regulator compare
SMc01850 -1.2 -2.3 hypothetical protein compare
SMc03128 -1.2 -2.2 ABC transporter permease compare
SMc01204 -1.2 -5.0 transmembrane oxidoreductase compare
SMa2168 -1.2 -1.3 tRNA-Met compare
SM_b21493 -1.2 -2.7 AsnC family transcriptional regulator compare
SMc02787 -1.2 -1.4 hypothetical protein compare
SM_b21479 -1.2 -1.4 hypothetical protein compare
SM_b21210 -1.2 -3.3 two-component response regulator protein compare
SMc00085 -1.2 -3.7 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc02833 -1.2 -1.6 penicillin-insensitive murein endopeptidase compare
SMc00492 -1.1 -0.7 hypothetical protein compare
SMc03834 -1.1 -1.1 pterin-4-alpha-carbinolamine dehydratase compare
SMc00413 -1.1 -2.3 hypothetical protein compare
SMc02114 -1.1 -2.3 hypothetical protein compare
SMc03763 -1.1 -1.8 cytosine-specific methyltransferase compare
SMa0558 -1.1 -3.5 hypothetical protein compare
SMc02550 -1.1 -1.9 hypothetical protein compare
SMc03785 -1.1 -2.5 dinucleoside polyphosphate hydrolase compare
SMc01581 -1.1 -3.7 hypothetical protein compare
SMc04233 -1.1 -1.7 hypothetical protein compare
SMa1118 -1.1 -1.1 HspC2 heat shock protein compare
SMc00987 -1.1 -1.5 hypothetical protein compare
SMc02425 -1.1 -2.6 transcriptional regulator compare
SM_b20942 -1.1 -2.9 UDP glucose 4-epimerase compare
SMc00461 -1.1 -1.1 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SM_b20563 -1.1 -1.6 hypothetical protein compare
SMc01770 -1.1 -1.5 serine hydroxymethyltransferase compare
SMc00169 -1.1 -6.6 malic enzyme compare
SMc01813 -1.1 -3.8 hypothetical protein compare
SM_b21524 -1.1 -1.7 septum formation inhibitor compare
SMc04024 -1.1 -4.6 membrane-bound lytic murein transglycosylase compare
SM_b20017 -1.0 -3.7 sugar ABC transporter ATP-binding protein compare
SMc01146 -1.0 -1.8 deoxyribonucleotide triphosphate pyrophosphatase compare
SM_b21494 -1.0 -5.2 ornithine cyclodeaminase compare
SMc03241 -1.0 -3.3 hypothetical protein compare
SMa1917 -1.0 -3.0 hypothetical protein compare
SMc04236 -1.0 -2.3 glycine-rich cell wall structural transmembrane protein compare
SM_b20444 -1.0 -2.0 hypothetical protein compare
SMc00013 -1.0 -1.0 cytochrome C oxidase subunit III transmembrane protein compare
SMc03777 -1.0 -3.6 gamma-glutamyl phosphate reductase compare
SMc01091 -1.0 -1.5 hypothetical protein compare
SMa0789 -1.0 -2.4 GntR family transcriptional regulator compare
SMc00507 -1.0 -1.5 hypothetical protein compare
SMc03781 -1.0 -1.8 rRNA large subunit methyltransferase compare
SMc00247 -1.0 -4.7 phosphatidylcholine synthase compare
SM_b21523 -1.0 -2.1 cell division inhibitor protein compare
SMa0333 -1.0 -2.0 hypothetical protein compare
SMc00937 -1.0 -5.3 TRK system potassium uptake transmembrane protein compare
SMc01089 -1.0 -1.0 hypothetical protein compare
SMc01877 -1.0 -3.4 DNA repair protein compare
SMc02050 -1.0 -2.0 trigger factor compare
SMc00802 -1.0 -0.6 hypothetical protein compare
SMc00970 -1.0 -1.3 exodeoxyribonuclease VII small subunit compare
SMc00602 -1.0 -3.3 excinuclease ABC subunit C compare
SMa5010 -1.0 -0.7 hypothetical protein compare
SM_b21331 -1.0 -2.0 hypothetical protein compare
SMc00334 -1.0 -1.3 cytidylate kinase compare
SMc01235 -1.0 -4.6 excinuclease ABC subunit A compare
SMc01461 -1.0 -3.4 DNA helicase II protein compare
SMc02304 -1.0 -3.4 hypothetical protein compare
SMc00804 -1.0 -1.2 hypothetical protein compare
SMc02615 -1.0 -1.3 signal peptide protein compare
SMa2215 -1.0 -2.9 GntR family transcriptional regulator compare
SMa1168 -1.0 -1.8 Dehydrogenase, FAD-dependent compare
SMc00856 -0.9 -0.8 hypothetical protein compare
SMa0339 -0.9 -3.4 short chain alcohol dehydrogenase-related dehydrogenase compare
SMc02280 -0.9 -0.8 hypothetical protein compare
SMc00406 -0.9 -4.1 4Fe-4S ferredoxin compare
SMc01606 -0.9 -3.6 permease compare
SMc02718 -0.9 -1.1 hypothetical protein compare
SMc01607 -0.9 -3.8 permease compare
SMc03899 -0.9 -0.6 hypothetical protein compare
SM_b20184 -0.9 -1.5 ABC transporter ATP-binding protein compare
SMc01845 -0.9 -1.3 transglycosylase transmembrane protein compare
SMc00026 -0.9 -3.5 hypothetical protein compare
SM_b20862 -0.9 -1.9 hypothetical protein compare
SMc01419 -0.9 -1.0 RNA polymerase sigma factor protein compare
SMc04361 -0.9 -2.4 hydantoin racemase compare
SMc01183 -0.9 -1.0 LexA repressor compare
SMc02306 -0.9 -0.9 hypothetical protein compare
SMa2023 -0.9 -2.5 hypothetical protein compare
SM_b20876 -0.9 -1.5 hypothetical protein compare
SMc01568 -0.9 -0.7 hypothetical protein compare
SM_b21580 -0.9 -1.1 hypothetical protein compare
SMc01757 -0.9 -1.3 hypothetical protein compare
SMa2412 -0.9 -5.1 RhrA transcriptional activator compare
SM_b20357 -0.9 -1.7 histidine kinase compare
SMa0433 -0.9 -1.6 hypothetical protein compare
SM_b20884 -0.9 -1.5 hypothetical protein compare
SMc00053 -0.9 -0.6 monovalent cation/H+ antiporter subunit C compare
SMa1365 -0.9 -0.7 ATP-binding protein compare
SMc01006 -0.9 -1.8 hypothetical protein compare
SMc01519 -0.9 -1.9 hypothetical protein compare
SMa5021 -0.9 -1.7 hypothetical protein compare
SMc01145 -0.9 -2.3 hypothetical protein compare
SM_b20889 -0.9 -2.8 hypothetical protein compare
SM_b20803 -0.9 -1.7 3-deoxy-manno-octulosonate cytidylyltransferase compare
SMa2414 -0.9 -6.2 RhtA rhizobactin receptor precursor compare
SM_b20703 -0.9 -1.7 hypothetical protein compare
SMc01991 -0.9 -0.9 short chain dehydrogenase compare
SMc00569 -0.8 -1.3 hypothetical protein compare
SMa0922 -0.8 -2.0 hypothetical protein compare
SMc01144 -0.8 -1.7 ribonuclease PH compare
SMc01439 -0.8 -1.7 hypothetical protein compare
SMc03280 -0.8 -2.0 transposase number 3 for insertion sequence ISRM28 compare
SMc00024 -0.8 -2.0 chromosome partition protein compare
SMc02739 -0.8 -1.8 glycine betaine transport ATP-binding ABC transporter protein compare
SMc00017 -0.8 -0.9 homoserine kinase compare
SMc02107 -0.8 -0.7 hypothetical protein compare
SM_b20015 -0.8 -3.3 sugar ABC transporter permease compare
SMa0286 -0.8 -1.3 hypothetical protein compare
SMc02162 -0.8 -4.6 long-chain-fatty-acid--CoA ligase compare
SMa2299 -0.8 -1.5 hypothetical protein compare
SMc02783 -0.8 -1.9 hypothetical protein compare
SMc04231 -0.8 -3.5 excinuclease ABC subunit B compare
SMc03028 -0.8 -1.2 flagellar basal body rod protein FlgC compare
SMc01325 -0.8 -1.9 hypothetical protein compare
SMc00948 -0.8 -3.9 glutamine synthetase compare
SM_b20752 -0.8 -2.3 3-hydroxyisobutyryl-CoA hydrolase compare
SMc02261 -0.8 -1.2 transcriptional regulator compare
SM_b21452 -0.8 -1.6 hypothetical protein compare
SMa0894 -0.8 -2.1 hypothetical protein compare
SMc01809 -0.8 -4.2 O-acetylhomoserine aminocarboxypropyltransferase compare
SMc00298 -0.8 -2.4 methionine aminopeptidase compare
SMc02497 -0.8 -1.1 hypothetical protein compare
SMc03066 -0.8 -1.1 hypothetical protein compare
SMc01361 -0.8 -2.5 dihydroorotase compare
SMc02478 -0.8 -3.7 hypothetical protein compare
SMc00675 -0.8 -3.0 hypothetical protein compare
SMa1213 -0.8 -2.1 FixP1 di-heme cytochrome c compare
SMc00576 -0.8 -1.8 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment