Experiment set2IT061 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

D-Galactose carbon source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS23505 +1.2 4.9 biopolymer transporter ExbD compare
CA265_RS02045 +1.1 1.2 hypothetical protein compare
CA265_RS20350 +1.0 4.3 gliding motility lipoprotein GldH compare
CA265_RS21565 +0.9 1.3 cold-shock protein compare
CA265_RS19945 +0.9 5.2 hypothetical protein compare
CA265_RS07735 +0.9 1.7 transcriptional regulator compare
CA265_RS00335 +0.9 1.6 hypothetical protein compare
CA265_RS22450 +0.9 3.0 GntR family transcriptional regulator compare
CA265_RS22800 +0.9 6.9 glycosyl transferase compare
CA265_RS21835 +0.9 2.6 hypothetical protein compare
CA265_RS19940 +0.9 7.4 hypothetical protein compare
CA265_RS21000 +0.9 5.0 ribosome silencing factor compare
CA265_RS22805 +0.8 5.8 glycosyl transferase compare
CA265_RS04295 +0.8 1.5 transcriptional regulator compare
CA265_RS12665 +0.8 1.7 cold-shock protein compare
CA265_RS15070 +0.8 4.4 hypothetical protein compare
CA265_RS21060 +0.8 2.1 hypothetical protein compare
CA265_RS05940 +0.8 2.3 hypothetical protein compare
CA265_RS25030 +0.8 2.7 hypothetical protein compare
CA265_RS02765 +0.8 2.5 cell division protein ZapA compare
CA265_RS20865 +0.8 2.0 hypothetical protein compare
CA265_RS03295 +0.7 5.1 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS23045 +0.7 3.6 cold-shock protein compare
CA265_RS15030 +0.7 2.4 PIN domain nuclease compare
CA265_RS15085 +0.7 3.9 hypothetical protein compare
CA265_RS20320 +0.7 6.1 hypothetical protein compare
CA265_RS06585 +0.7 3.5 hypothetical protein compare
CA265_RS20315 +0.7 5.4 hypothetical protein compare
CA265_RS21360 +0.7 2.1 hypothetical protein compare
CA265_RS21670 +0.6 2.0 hypothetical protein compare
CA265_RS10470 +0.6 4.4 amidinotransferase compare
CA265_RS09340 +0.6 2.2 coproporphyrinogen III oxidase compare
CA265_RS19810 +0.6 1.3 hypothetical protein compare
CA265_RS18120 +0.6 4.5 gliding motility protein GldM compare
CA265_RS18115 +0.6 3.9 gliding motility protein GldN compare
CA265_RS21365 +0.6 1.1 thiol reductase thioredoxin compare
CA265_RS18125 +0.6 3.4 gliding motility protein GldL compare
CA265_RS19990 +0.6 1.3 YtxH domain-containing protein compare
CA265_RS19640 +0.6 2.6 hypothetical protein compare
CA265_RS03260 +0.6 4.2 multidrug ABC transporter ATP-binding protein compare
CA265_RS23525 +0.6 4.5 hypothetical protein compare
CA265_RS23510 +0.6 3.0 energy transducer TonB compare
CA265_RS03450 +0.6 2.0 hypothetical protein compare
CA265_RS23515 +0.5 1.6 hypothetical protein compare
CA265_RS12595 +0.5 2.8 RNA polymerase subunit sigma-24 compare
CA265_RS00210 +0.5 2.0 potassium-transporting ATPase subunit F compare
CA265_RS22965 +0.5 2.2 leucyl/phenylalanyl-tRNA--protein transferase compare
CA265_RS25440 +0.5 3.2 capsular biosynthesis protein compare
CA265_RS19445 +0.5 3.2 hypothetical protein compare
CA265_RS20930 +0.5 3.2 hypothetical protein compare
CA265_RS16615 +0.5 1.4 hypothetical protein compare
CA265_RS01975 +0.5 2.1 cell division protein compare
CA265_RS24980 +0.5 2.3 hypothetical protein compare
CA265_RS03675 +0.5 2.4 hypothetical protein compare
CA265_RS03275 +0.5 2.5 hypothetical protein compare
CA265_RS23480 +0.5 3.4 hypothetical protein compare
CA265_RS23675 +0.5 1.6 hypothetical protein compare
CA265_RS06030 +0.5 1.1 SelT/selW/selH selenoprotein compare
CA265_RS06115 +0.5 3.2 DNA mismatch repair protein MutT compare
CA265_RS19760 +0.5 1.3 hypothetical protein compare
CA265_RS04645 +0.5 3.4 cation transporter compare
CA265_RS00690 +0.5 1.7 hypothetical protein compare
CA265_RS14925 +0.5 1.2 hypothetical protein compare
CA265_RS20750 +0.5 1.5 hypothetical protein compare
CA265_RS23635 +0.5 3.9 gliding motility lipoprotein GldJ compare
CA265_RS14825 +0.5 1.5 outer membrane protein assembly factor BamD compare
CA265_RS24720 +0.5 3.9 multidrug transporter compare
CA265_RS21615 +0.5 1.9 metalloprotease compare
CA265_RS17565 +0.5 1.8 hypothetical protein compare
CA265_RS07535 +0.5 2.0 ATPase compare
CA265_RS18090 +0.5 4.2 gliding motility protein compare
CA265_RS19050 +0.5 1.2 acylphosphatase compare
CA265_RS04465 +0.5 2.2 PspC family transcriptional regulator compare
CA265_RS03280 +0.5 2.3 hypothetical protein compare
CA265_RS11900 +0.5 1.8 hypothetical protein compare
CA265_RS08570 +0.5 1.7 dehydratase compare
CA265_RS19575 +0.5 1.4 glycoside hydrolase compare
CA265_RS24790 +0.5 3.0 peptidylprolyl isomerase compare
CA265_RS00420 +0.5 1.6 FUSC family protein compare
CA265_RS07550 +0.5 1.3 hypothetical protein compare
CA265_RS09840 +0.5 0.7 YajQ family cyclic di-GMP-binding protein compare
CA265_RS18225 +0.5 2.5 DNA-binding response regulator compare
CA265_RS16550 +0.5 1.9 acyl carrier protein compare
CA265_RS05135 +0.5 1.8 ferritin compare
CA265_RS24820 +0.5 1.7 adenylate cyclase compare
CA265_RS22690 +0.5 3.3 hypothetical protein compare
CA265_RS08085 +0.5 2.8 aminodeoxychorismate lyase compare
CA265_RS16470 +0.5 2.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CA265_RS16515 +0.5 0.9 hypothetical protein compare
CA265_RS25135 +0.5 1.8 histidine kinase compare
CA265_RS03495 +0.5 1.1 cytochrome c biogenesis protein compare
CA265_RS09035 +0.5 2.5 anti-anti-sigma factor compare
CA265_RS10985 +0.5 1.9 hypothetical protein compare
CA265_RS22075 +0.5 2.2 hypothetical protein compare
CA265_RS08815 +0.5 2.6 hypothetical protein compare
CA265_RS11570 +0.4 2.3 hypothetical protein compare
CA265_RS19545 +0.4 2.2 protease compare
CA265_RS20815 +0.4 1.2 hypothetical protein compare
CA265_RS17115 +0.4 1.5 arsenate reductase compare
CA265_RS23640 +0.4 3.5 hypothetical protein compare
CA265_RS25410 +0.4 2.3 gluconate kinase compare
CA265_RS22165 +0.4 0.9 hypothetical protein compare
CA265_RS09720 +0.4 2.7 transglycosylase compare
CA265_RS09165 +0.4 2.5 AAA family ATPase compare
CA265_RS22930 +0.4 2.6 hypothetical protein compare
CA265_RS22435 +0.4 1.9 hypothetical protein compare
CA265_RS19625 +0.4 2.3 hypothetical protein compare
CA265_RS24605 +0.4 0.6 hypothetical protein compare
CA265_RS01220 +0.4 1.2 hypothetical protein compare
CA265_RS04985 +0.4 2.2 hypothetical protein compare
CA265_RS08230 +0.4 2.6 redoxin compare
CA265_RS18780 +0.4 1.0 YicC family protein compare
CA265_RS09320 +0.4 1.4 hypothetical protein compare
CA265_RS14670 +0.4 3.0 hypothetical protein compare
CA265_RS06025 +0.4 2.1 hypothetical protein compare
CA265_RS25365 +0.4 2.2 glycerol acyltransferase compare
CA265_RS16750 +0.4 2.7 hypothetical protein compare
CA265_RS15890 +0.4 2.4 DNA-binding protein compare
CA265_RS02605 +0.4 3.1 hypothetical protein compare
CA265_RS25260 +0.4 1.4 hypothetical protein compare
CA265_RS23145 +0.4 1.3 hypothetical protein compare
CA265_RS11585 +0.4 1.8 hypothetical protein compare
CA265_RS08635 +0.4 1.3 damage-inducible protein DinB compare
CA265_RS18130 +0.4 2.9 gliding motility-associated lipoprotein compare
CA265_RS23815 +0.4 2.2 hypothetical protein compare
CA265_RS03255 +0.4 2.7 glycerophosphodiester phosphodiesterase compare
CA265_RS06305 +0.4 1.9 succinyl-CoA--3-ketoacid-CoA transferase compare
CA265_RS24650 +0.4 1.8 beta-phosphoglucomutase compare
CA265_RS09415 +0.4 0.7 hypothetical protein compare
CA265_RS08015 +0.4 2.3 hypothetical protein compare
CA265_RS17555 +0.4 2.7 hypothetical protein compare
CA265_RS20940 +0.4 1.8 hypothetical protein compare
CA265_RS09305 +0.4 2.7 histone deacetylase compare
CA265_RS01100 +0.4 2.0 transcriptional regulator compare
CA265_RS17710 +0.4 2.1 hypothetical protein compare
CA265_RS18145 +0.4 1.7 hypothetical protein compare
CA265_RS18030 +0.4 1.7 hypothetical protein compare
CA265_RS11000 +0.4 1.1 large-conductance mechanosensitive channel compare
CA265_RS23355 +0.4 1.4 hypothetical protein compare
CA265_RS17685 +0.4 2.0 hypothetical protein compare
CA265_RS20375 +0.4 1.8 methyltransferase compare
CA265_RS17140 +0.4 1.4 thioredoxin family protein compare
CA265_RS04335 +0.4 2.6 hypothetical protein compare
CA265_RS20475 +0.4 1.4 hypothetical protein compare
CA265_RS05960 +0.4 2.1 short-chain dehydrogenase compare
CA265_RS15870 +0.4 1.4 hypothetical protein compare
CA265_RS25335 +0.4 0.7 hypothetical protein compare
CA265_RS12555 +0.4 2.0 hypothetical protein compare
CA265_RS20525 +0.4 0.7 hypothetical protein compare
CA265_RS24480 +0.4 1.6 hypothetical protein compare
CA265_RS18990 +0.4 3.2 cell surface protein SprA compare
CA265_RS23140 +0.4 1.9 hypothetical protein compare
CA265_RS22205 +0.4 1.9 hypothetical protein compare
CA265_RS18805 +0.4 0.6 hypothetical protein compare
CA265_RS03155 +0.4 2.0 hypothetical protein compare
CA265_RS06405 +0.4 1.1 hypothetical protein compare
CA265_RS23890 +0.4 0.8 hypothetical protein compare
CA265_RS21470 +0.4 1.6 elongation factor P compare
CA265_RS18035 +0.4 1.4 hypothetical protein compare
CA265_RS14955 +0.4 1.6 hypothetical protein compare
CA265_RS18975 +0.4 1.6 glycine cleavage system protein H compare
CA265_RS25050 +0.4 1.7 hypothetical protein compare
CA265_RS01175 +0.4 2.1 hypothetical protein compare
CA265_RS19910 +0.3 1.3 GDSL family lipase compare
CA265_RS18190 +0.3 2.1 cupin compare
CA265_RS02315 +0.3 1.6 single-stranded DNA-binding protein compare
CA265_RS18890 +0.3 2.3 nicotinamide mononucleotide transporter compare
CA265_RS24920 +0.3 1.1 hypothetical protein compare
CA265_RS00515 +0.3 1.1 hypothetical protein compare
CA265_RS08100 +0.3 2.0 cyclic nucleotide-binding protein compare
CA265_RS00055 +0.3 2.5 hypothetical protein compare
CA265_RS03290 +0.3 1.8 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS23630 +0.3 1.9 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
CA265_RS14770 +0.3 1.6 hypothetical protein compare
CA265_RS20655 +0.3 1.5 transcriptional regulator compare
CA265_RS07625 +0.3 1.6 hypothetical protein compare
CA265_RS14840 +0.3 2.5 DUF4835 domain-containing protein compare
CA265_RS19560 +0.3 0.8 hypothetical protein compare
CA265_RS21865 +0.3 2.2 two-component sensor histidine kinase compare
CA265_RS10615 +0.3 1.2 diacylglycerol kinase compare
CA265_RS14665 +0.3 2.3 hypothetical protein compare
CA265_RS00085 +0.3 2.3 hypothetical protein compare
CA265_RS04340 +0.3 1.3 hypothetical protein compare
CA265_RS17705 +0.3 2.4 hypothetical protein compare
CA265_RS22980 +0.3 0.9 hypothetical protein compare
CA265_RS05395 +0.3 1.2 heme oxygenase compare
CA265_RS07885 +0.3 2.1 response regulator compare
CA265_RS24675 +0.3 1.7 RNA polymerase compare
CA265_RS05100 +0.3 1.7 threonylcarbamoyl-AMP synthase compare
CA265_RS19775 +0.3 1.9 hypothetical protein compare
CA265_RS15115 +0.3 2.0 porin compare
CA265_RS06835 +0.3 1.9 hypothetical protein compare
CA265_RS01035 +0.3 1.3 hypothetical protein compare
CA265_RS19450 +0.3 1.9 hypothetical protein compare
CA265_RS15010 +0.3 1.4 hypothetical protein compare
CA265_RS24240 +0.3 1.1 hypothetical protein compare
CA265_RS25245 +0.3 2.0 hypothetical protein compare
CA265_RS06930 +0.3 1.1 hypothetical protein compare
CA265_RS08445 +0.3 0.6 endonuclease compare
CA265_RS21225 +0.3 2.0 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Galactose in Pedobacter sp. GW460-11-11-14-LB5

For carbon source D-Galactose across organisms